SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16483

Length: 2093 nt

UniGene Fasta

>sp_v3.0_unigene16483
ATTGGGGAGATTTGTTTTGGTCGTAATCATATATAAGATATATAACACCATTCCACTGAATCACATGAGGCCTCACAAAATATGCTATATTAGACAACTCAATTACATCAACACCTAGGCTGTCTCTGGGGTTTTATGTCCAGGGTTCTCTAGGGTTTTTAGGTAGTCTTCCTATATCTGCCCTACCTGCAAGATCTCAATCGTAAGGCTGTTTTCCGCTTTTCTCTGTCGGGTGCTCTTTTATTTGGTTGCGATGGATTCTTCAAAGGACAACAACACAGAACGGAAAGAAAACGTTGCAGAAGAGAAGAGAAATGATACCTCTAGATCGGCTTCGAGTCCTGGAAAAATCTTCATCGGCGGTCTTTTGAGGAGTACCACCACAGACGCTTTGACGAAGCATTTCAGGAAGTATGGGGAAATAAAAGACTCTGTTATCATGAAGGACCGTGTCACTGGGCAGTCTCGGGGATTCGGGTTTGTGACTTTTGCTGACCCCTCTGTGGTGGACAAGGTTATACAGGACAACCACATCATCGATGGCAGAACGGTGGATATCAAAAGAACCATTCCAAGGGGTTATACGTCAAAGATTTTTGTGGGCGGTATACCCAAAACTATTACTGATGATGAGTTCAAGGACTACTTTTCCAAATTTGGGAAAGTTATAGAACATCAGATTATGCGAGATCGGAGCACTGGGGAGTCCAGGGGTTTTGGTTTTATTACTTTCGAAAGTGAGCAAGTTGTGGAGGAAATCATATCTGAGCAGATTGTGGAGCAAATCATATCCCAAGGCAAAAAGATTGAGCTAGGCGGAAAGCAAGTGGAGATCAAGATCGCTGAACCGAAGAGATCCTTGCCTGGCGCTGCTCCTACTCATGGGATTGATAGTCGGCCGCCCTACGTGCCTGGTGGAGTTGGGGGTTTCAGGCATAGTTATAGTGGGTTTGGAGGGTCGGGTTATGGGAGCAACTCGTATATGCCAGCAGGAGGTTATGGCGGTAGGCCTGAATGGCAGGCAGGCGGAATCGTATCCCAGGGAAAAATGATTGAGGTAGGCGGAAAGCAGGTGGAGATCAAGAAAGCTGAACCGAATAAACCCTTGTTCAATGCTGCTCCTATCTATGGTATTGATAGTCGGCCTCCCAACGTTCCTGGTGGAGTTGGGGGATTCAGTGGTAGTTATAGTGGGTTTGGAGGGTCGGGTTATGGCAGCAACCCGTATATGTCAGCTGGAGGTTATGGCGGTAGGCCTGGAGGGTATTCTGAGTATGGAGGTTCTGAATATGGTAAGGGTTACGGAGGTTATGGGATTGTCAGTTTAGAAGGCTCTAAAGAAGATCCTTCCCATGGCTATGGAGTTCGTCCTGCGTCTAATGGCGAAGGGTTTGGTGGGTATGGTAGTGGGATGATTGGTGGCTATAGAGCTACAGGTTATGGTTACGGTTCCAATGTTGATGGTTGTAGTTATAAGTTATCGGGTTACAGTTCCAATGTTGATGGTTATAGTTCTAACTCATCACGTCTTGGAGGTGCTTATGAGAGTGGGACGGGAGGTCCTGGAAGTAGAACCAATGATCGATATCACCCATATGCCAGGCAGAACAATTGATAGTGGAGTTTCTCGAAAGCAATAGTTGTCGATACAGATAAGACTGTTAGAACTCTAACAATTCCAGATATCTACTTTGTTGCCTTCTAGTTTAAAGAAAAGTAAATGTACTATTGTTATCTGAAATCATGAATTGCAATTTTATTTGCTTGCATTGGAAGCCCCATTTCTGCAGCGTTGAAACTTCTAAGCGGTTGTCTATTTTCGTTGTGTACTCTTCGAAAGTCCTTGGGCATTATTACCATTGTGACGGTTAGATTGCCCTTGGCTTTTATTTAGTTAATGGCCATTTACTAACATGGTTGCTCTCACCCCCCCAAAGAGGCCCATGCCCATGTGGAAAATACCACAATGCAGTGGTTCAATGTGACCAACAGTGAATTATCCATGATTTTGTAATTCAACAATTTTCCCAAGACATAATAATCATATGAGTATTTAGTAATTTACTATCATGACATTACTAGCATTCTATGGA

Ace file of the UniGene sp_v3.0_unigene16483

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA recognition motif-containing protein [Arabidopsis thaliana] dbj\|BAB03120.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL85976.1\| unknown protein [Arabidopsis thaliana] gb\|AAM67536.1\| unknown protein [Arabidopsis thaliana] dbj\|BAD94504.1\| hypo	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	Putative uncharacterized protein At3g13224	-	-	1.052e-08	-

Source	Gene names
Sma3	At3g13224; At5g40490; B1131G07.23-1; B1131G07.23-2; GSVIVT00020662001; GSVIVT00029068001; GSVIVT00033419001; GSVIVT00034188001; GSVIVT00038668001; MJH23.3; Os02g0221500; Os06g0566100; Os08g0492100; OsI_23407; OsI_29708; OsJ_05928; OsJ_07373; OsJ_21732; Os

Source	GOs	Term	Type	Identity
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Paraneoplastic encephalomyelitis antigen	IPR002343	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Bacterial Ig-like, group 2	IPR003343	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G13224.2	-	54%
RefSeq	Arabidopsis thaliana	NP_683559.2	RNA recognition motif-containing protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002298541.1	predicted protein, partial [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVM3

Fln msg: your sequence is longer than subject: 454 - 375

Fln protein: MDSSKDNNTERKENVAEEKRNDTSRSASSPGKIFIGGLLRSTTTDALTKHFRKYGEIKDSVIMKDRVTGQSRGFGFVTFADPSVVDKVIQDNHIIDGRTVDIKRTIPRGYTSKIFVGGIPKTITDDEFKDYFSKFGKVIEHQIMRDRSTGESRGFGFITFESEQVVEEIISEQIVEQIISQGKKIELGGKQVEIKIAEPKRSLPGAAPTHGIDSRPPYVPGGVGGFRHSYSGFGGSGYGSNSYMPAGGYGGRPEWQAGGIVSQGKMIEVGGKQVEIKKAEPNKPLFNAAPIYGIDSRPPNVPGGVGGFSGSYSGFGGSGYGSNPYMSAGGYGGRPGGYSEYGGSEYGKGYGGYGIVSLEGSKEDPSHGYGVRPASNGEGFGGYGSGMIGGYRATGYGYGSNVDGCSYKLSGYSSNVDGYSSNSSRLGGAYESGTGGPGSRTNDRYHPYARQNN*

Protein Length: 455

Fln nts: ATTGGGGAGATTTGTTTTGGTCGTAATCATATATAAGATATATAACACCATTCCACTGAATCACATGAGGCCTCACAAAATATGCTATATTAGACAACTCAATTACATCAACACCTAGGCTGTCTCTGGGGTTTTATGTCCAGGGTTCTCTAGGGTTTTTAGGTAGTCTTCCTATATCTGCCCTACCTGCAAGATCTCAATCGTAAGGCTGTTTTCCGCTTTTCTCTGTCGGGTGCTCTTTTATTTGGTTGCG_-_ATGGATTCTTCAAAGGACAACAACACAGAACGGAAAGAAAACGTTGCAGAAGAGAAGAGAAATGATACCTCTAGATCGGCTTCGAGTCCTGGAAAAATCTTCATCGGCGGTCTTTTGAGGAGTACCACCACAGACGCTTTGACGAAGCATTTCAGGAAGTATGGGGAAATAAAAGACTCTGTTATCATGAAGGACCGTGTCACTGGGCAGTCTCGGGGATTCGGGTTTGTGACTTTTGCTGACCCCTCTGTGGTGGACAAGGTTATACAGGACAACCACATCATCGATGGCAGAACGGTGGATATCAAAAGAACCATTCCAAGGGGTTATACGTCAAAGATTTTTGTGGGCGGTATACCCAAAACTATTACTGATGATGAGTTCAAGGACTACTTTTCCAAATTTGGGAAAGTTATAGAACATCAGATTATGCGAGATCGGAGCACTGGGGAGTCCAGGGGTTTTGGTTTTATTACTTTCGAAAGTGAGCAAGTTGTGGAGGAAATCATATCTGAGCAGATTGTGGAGCAAATCATATCCCAAGGCAAAAAGATTGAGCTAGGCGGAAAGCAAGTGGAGATCAAGATCGCTGAACCGAAGAGATCCTTGCCTGGCGCTGCTCCTACTCATGGGATTGATAGTCGGCCGCCCTACGTGCCTGGTGGAGTTGGGGGTTTCAGGCATAGTTATAGTGGGTTTGGAGGGTCGGGTTATGGGAGCAACTCGTATATGCCAGCAGGAGGTTATGGCGGTAGGCCTGAATGGCAGGCAGGCGGAATCGTATCCCAGGGAAAAATGATTGAGGTAGGCGGAAAGCAGGTGGAGATCAAGAAAGCTGAACCGAATAAACCCTTGTTCAATGCTGCTCCTATCTATGGTATTGATAGTCGGCCTCCCAACGTTCCTGGTGGAGTTGGGGGATTCAGTGGTAGTTATAGTGGGTTTGGAGGGTCGGGTTATGGCAGCAACCCGTATATGTCAGCTGGAGGTTATGGCGGTAGGCCTGGAGGGTATTCTGAGTATGGAGGTTCTGAATATGGTAAGGGTTACGGAGGTTATGGGATTGTCAGTTTAGAAGGCTCTAAAGAAGATCCTTCCCATGGCTATGGAGTTCGTCCTGCGTCTAATGGCGAAGGGTTTGGTGGGTATGGTAGTGGGATGATTGGTGGCTATAGAGCTACAGGTTATGGTTACGGTTCCAATGTTGATGGTTGTAGTTATAAGTTATCGGGTTACAGTTCCAATGTTGATGGTTATAGTTCTAACTCATCACGTCTTGGAGGTGCTTATGAGAGTGGGACGGGAGGTCCTGGAAGTAGAACCAATGATCGATATCACCCATATGCCAGGCAGAACAATTGA___TAGTGGAGTTTCTCGAAAGCAATAGTTGTCGATACAGATAAGACTGTTAGAACTCTAACAATTCCAGATATCTACTTTGTTGCCTTCTAGTTTAAAGAAAAGTAAATGTACTATTGTTATCTGAAATCATGAATTGCAATTTTATTTGCTTGCATTGGAAGCCCCATTTCTGCAGCGTTGAAACTTCTAAGCGGTTGTCTATTTTCGTTGTGTACTCTTCGAAAGTCCTTGGGCATTATTACCATTGTGACGGTTAGATTGCCCTTGGCTTTTATTTAGTTAATGGCCATTTACTAACATGGTTGCTCTCACCCCCCCAAAGAGGCCCATGCCCATGTGGAAAATACCACAATGCAGTGGTTCAATGTGACCAACAGTGAATTATCCATGATTTTGTAATTCAACAATTTTCCCAAGACATAATAATCATATGAGTATTTAGTAATTTACTATCATGACATTACTAGCATTCTATGGA

Fln Alignment:

Contig16483___SSKDNNTERKENVAEE----KRNDTSRSASSPGKIFIGGLLRSTTTDALTKHFRKYGEIKDSVIMKDRVTGQSRGFGFVTFADPSVVDKVIQDNHIIDGRTVDIKRTIPRGYTS------KIFVGGIPKTITDDEFKDYFSKFGKVIEHQIMRDRSTGESRGFGFITFXXXXXXXXXXXXXXXXXXXXXGKKIELGGKQVEIKIAEPKRSLPGAAPTHGIDSRPPYVPGGVXXXXXXXXXXXXXXXXXXXXMPAGGYGGRPEWQAG
A9NVM3_______________SNEDDNTEQEENVVEEQKEDKNNDTSREASSPGKIFIGGLSRSTTTVVFTKHFSKYGELTDSVIMKDRHTGQPRGFGFVTYADASVVDKVIEDKHILDGRTVEIKRTIPRGNTSKGPKTKKIFVGGIPTTITEDEFKDYFSKFGKVAEHQIMQDRSTGRSRGFGFITF---------DSEQVVEEIISQGKMIELGGKQVEIKKAEPKKPSSDAGPVHGIDNRPPYIPGGVGGFRDSYSGFEGAGYGSNPYRSAGGYGGRPGGYAG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1854	89		10		0.999919
1928		69	15		0.999985
2054	7	15		76	0.999983
2065	75		25		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain