SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15816

Length: 3380 nt

UniGene Fasta

>sp_v3.0_unigene15816
ATGGGGGGACCCCAGTAGGATCCTTAGGGGATGCGGAGGGGAGGGAGACGGTGTGAACTGACATGCCTCTCCCAGATTACGTGTGGAAATGGAATTTCTGTTGAAAATGAGCAAGTTTCAAGATGATATACAAAGATCATTAAATTTCGTTTGAGAAAATTTCTGGCTAACTTTCTCTCCACCTGACGTTTTGTCACTAGCCAGGATATCGTATTTGGGGTGGAGTGAAGTGGACTGGATTGAGCCGATGGACATTTTCATAGGTATCCAACGAGGACCCTACACGGTCACATGTTCACATGTTCAAGATGGATTTGTTACCCCATTATCTAATCACTATCCTAACCCGTATGCCATTCGGATGCTATATATACATCCATGAATTACTCCGGACCTTGGACATGTTGACTATGGGTTCTCTACCAGTACTAACTTTCATTTGTGTAGTCTGTGCTTTGTGGTCTTTGGGACATGGCCAGCAAGTTGGCTATGGCTATCGTCTAGTCTCTGTTGATCAAGGATCCGATGGGAGCTTGATTGGGAGCTTGGAACTCATCCAGCAAACTAATACTTATGGTCCTGACATTCCACATCTTCGGCTCTATGTCAAACATGAAACAGAGGATCGGGTGAGAGTGCATATAACCGATGCACAGACCAAGAGATGGGAAGTTCCACAGGAGTTGCTGTCCAGGGAACAAGCGCCTGCCGATCTGCCGGTAAGCAGTAGGAAGGCCAAACCAGCCAAGTCAGCTTTCGAGTTCTCGAAGTTTGCTGGAGGGGAGTTGATCGTCTCCTTCATTTCCAATCCATTTGGGTTTGCAATAAAGCGCAAATCCAATGGGGATGTGCTCTTCAACTCTTCCTATGGGAACTTGGTCTTCAAAGATCAGTACCTGGAGGTCACCACTGGCCTTCCTGCAACAGCTTCCCTGTATGGATTGGGCGAGAACACGCAGCCCAACGGGATCAAAATTCTTCCCAAAGAAGCTTATACCCTGTACACAACTGACATTTCTGCAATAAATCTGAATACAGATTTGTATGGCTCCCATCCTTTTTACATGGATGTAAGGAACGGAGGAATCTCTCATGGAGTTCTGCTGTTGAACAGCAATGGGATGGACGTTTTCTATACTGGTAATGCATTGACCTACAAGGTCATCGGGGGCGTGCTTGACTTCTACTTCTTTGCAGGGACTTCTCCATTGGATGTCGTTCAGCAGTATACTGCCCTCATTGGCCGCCCAGTTGCCCAGCCCTACTGGGCCTTTGGGTTTCATCAATGCAGGTGGGGATACAAGAACGTATCAGACATAACGAATGTGGTGGAAAACTATAACAAATCTCAGATACCTCTGGATGTTATATGGAACGATGATGACCACATGGATGGAGCCAAAGACTTCACCCTTGACCCTATCAACTATCCTGAATATAAGCTGCGTCCCTTCCTTGACCGAATTCATGCAAATGGAATGAGATATGTCGTCCTTATCGACCCAGGGATTGCCATTAACACGAGCTACGGCACGTTCCAGCGAGGTATGGCGGACGACGTTTTCATAAAGCACGACGGGAGTCCGTTCTTGGGTCAGGTGTGGCCCGGCGCCGTGTACTTTCCGGACTTCCTGAACCCAAAGACGGTGAATTTCTGGGCCGACGAGATCTCCCGCTTCCACCAAATGGTCCCCGTGGACGGTCTCTGGATCGACATGAACGAGATCTCCAATTTCTGCAGTGGCAAGTGCTCCATCCCCACAAACCGGAGCTGCCCGGGCACGGGTTTCCCATGGGATTGCTGCCTCGACTGCACAAACATCACCGCCACTCGATGGGACGTGCCACCCTACAAGATCAACGCCTCCGGTACCCAGGTCCCGCTGGGGTTCAAGACCATCGCCACCAGCTCCGTCCACTACAACGGCGTCCTCGAGTACGACGCCCACAGCCTCTATGGCTTATCGCAGGCCATCGCCACGCACAAGGCGCTCCAGAATCTGTTGAACAAGCGCCCATTCGTGCTCACGCGCTCCACCTTCGTGGGGTCAGGGTCATATGCTGCGCACTGGACGGGAGACAACAAAGCCACTTGGGAGGATCTCCGCTACTCAATCTCGACCATACTCAACTTCGGCATGTTCGGGATGCCCATGGTGGGCGCTGACATCTGCGGCTTCTATCCCGACACCACGGAGGAGCTCTGCGGGCGGTGGATTCAGTTGGGGGCCTTTTACCCCTTCAGCAGAGACCATTCCAATCTTGCCAGCAAACGCCAGGAGCTTTATCTCTGGGATTCCGTTGCCAAATCAGCAAGAAAGGCATTAGGGCTGCGTTACCGCCTTCTCCCTTATCTTTACACATTGAACTACGATGCCCATACTACTGGAGCACCCATTGCCCGCCCTTTGTTTTTCTCATTCCCACAGGACCCAGAAACCTACGCTGTGAGCAAACAGTTTCTTCTCGGCCCAGGGGTTCTAATTTCTCCCGTGCTCTATAACAAAACCACATCGGTGAATGCTTATTTCCCAAAGGGGAGCTGGTATAACCTTAACGATATGACCATGGCCGTGAAGTCCAGTGGGCAGTATGTTACCCTCCAAGCTCCCATGGATACCATTAATGTTCATGTGTGTGAGGGCATGATTCTGCCCATGCAAAGAGGGGGAATGACTACTACGGCGGCCAGGATGACCCCTTTCACTTTGATTATTGCGTTCCCACTGGGGTTCCAGTCTACGGGAGGGAAGGCCAAAGGCCATCTCTTTTTGGATTCGGGTGAAGATGTTGATATGAAGATTGCAGAGGGGAAGTCTACATATGTTGATTTCTCCGCCGAGTCGGATGGGAAGAAAGTGAGACTAGTGTCCCAGGTTGAGAGTGGATCGTATGGTCTTAGTCAAGGGTGGGTAGTGGAGAAATTGATGATCCTGGGACTCTCCAAATCTCATTTATCTTCTCAGATTGCATTCCAGTTGGATGGGAAGCCATTCACTTCCTCATCTTTTACATATTCAGTACAACCCCTTTCCACCAGTGCTGAGCAGAGCCAGGGCGGCGGTGCAATAATGGAATTGAACGGATTGGCTCTCCCAGTAGGTAGGAACATTGACCTTTCATGGACTTTGTAGCTTGATTCCTAAGAAAAGAGCACATGCGCTCTGATTTGTGTTTTGCGGTAACAAATTTCGTGAGTTATACACGTAAATCTGGTATGTAATGAAATTCCAATAACATCTTGAACAAGTCGTTATACATGCTGTCGCTTGGAAGTGAATGGTGGAAACTTTAATCTGTGAGCGTCAGGAGTTCCATAGGGTTGACACGTTTGCCAAAGCTGGTTAGGTGTAAAAATATAATGAGTTGTTTTTAGCCAC

Ace file of the UniGene sp_v3.0_unigene15816

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative alpha-xylosidase n=1 Tax=Pinus pinaster RepID=Q8VWV9_PINPS	-	-	97%
FL-Next	tr=Putative alpha-xylosidase; Pinus pinaster (Maritime pine).	-	-	99%
Sma3	Putative alpha-xylosidase	-	-	-

Source	Gene names
Sma3	XYL1;

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	0.0	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 31	IPR000322	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G68560.1	ATXYL1, XYL1, TRG1 alpha-xylosidase 1 chr1:25734435-25737897 REVERSE LENGTH=915	60%
RefSeq	Arabidopsis thaliana	NP_177023.1	alpha-xylosidase 1 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002311455.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q8VWV9

Fln msg: your sequence is longer than subject: 945 - 910

Fln protein: MFKMDLLPHYLITILTRMPFGCYIYIHELLRTLDMLTMGSLPVLTFICVVCALWSLGHGQQVGYGYRLVSVDQGSDGSLIGSLELIQQTNTYGPDIPHLRLYVKHETEDRVRVHITDAQTKRWEVPQELLSREQAPADLPVSSRKAKPAKSAFEFSKFAGGELIVSFISNPFGFAIKRKSNGDVLFNSSYGNLVFKDQYLEVTTGLPATASLYGLGENTQPNGIKILPKEAYTLYTTDISAINLNTDLYGSHPFYMDVRNGGISHGVLLLNSNGMDVFYTGNALTYKVIGGVLDFYFFAGTSPLDVVQQYTALIGRPVAQPYWAFGFHQCRWGYKNVSDITNVVENYNKSQIPLDVIWNDDDHMDGAKDFTLDPINYPEYKLRPFLDRIHANGMRYVVLIDPGIAINTSYGTFQRGMADDVFIKHDGSPFLGQVWPGAVYFPDFLNPKTVNFWADEISRFHQMVPVDGLWIDMNEISNFCSGKCSIPTNRSCPGTGFPWDCCLDCTNITATRWDVPPYKINASGTQVPLGFKTIATSSVHYNGVLEYDAHSLYGLSQAIATHKALQNLLNKRPFVLTRSTFVGSGSYAAHWTGDNKATWEDLRYSISTILNFGMFGMPMVGADICGFYPDTTEELCGRWIQLGAFYPFSRDHSNLASKRQELYLWDSVAKSARKALGLRYRLLPYLYTLNYDAHTTGAPIARPLFFSFPQDPETYAVSKQFLLGPGVLISPVLYNKTTSVNAYFPKGSWYNLNDMTMAVKSSGQYVTLQAPMDTINVHVCEGMILPMQRGGMTTTAARMTPFTLIIAFPLGFQSTGGKAKGHLFLDSGEDVDMKIAEGKSTYVDFSAESDGKKVRLVSQVESGSYGLSQGWVVEKLMILGLSKSHLSSQIAFQLDGKPFTSSSFTYSVQPLSTSAEQSQGGGAIMELNGLALPVGRNIDLSWTL*

Protein Length: 946

Fln nts: ATGGGGGGACCCCAGTAGGATCCTTAGGGGATGCGGAGGGGAGGGAGACGGTGTGAACTGACATGCCTCTCCCAGATTACGTGTGGAAATGGAATTTCTGTTGAAAATGAGCAAGTTTCAAGATGATATACAAAGATCATTAAATTTCGTTTGAGAAAATTTCTGGCTAACTTTCTCTCCACCTGACGTTTTGTCACTAGCCAGGATATCGTATTTGGGGTGGAGTGAAGTGGACTGGATTGAGCCGATGGACATTTTCATAGGTATCCAACGAGGACCCTACACGGTCACATGTTCAC_-_ATGTTCAAGATGGATTTGTTACCCCATTATCTAATCACTATCCTAACCCGTATGCCATTCGGATGCTATATATACATCCATGAATTACTCCGGACCTTGGACATGTTGACTATGGGTTCTCTACCAGTACTAACTTTCATTTGTGTAGTCTGTGCTTTGTGGTCTTTGGGACATGGCCAGCAAGTTGGCTATGGCTATCGTCTAGTCTCTGTTGATCAAGGATCCGATGGGAGCTTGATTGGGAGCTTGGAACTCATCCAGCAAACTAATACTTATGGTCCTGACATTCCACATCTTCGGCTCTATGTCAAACATGAAACAGAGGATCGGGTGAGAGTGCATATAACCGATGCACAGACCAAGAGATGGGAAGTTCCACAGGAGTTGCTGTCCAGGGAACAAGCGCCTGCCGATCTGCCGGTAAGCAGTAGGAAGGCCAAACCAGCCAAGTCAGCTTTCGAGTTCTCGAAGTTTGCTGGAGGGGAGTTGATCGTCTCCTTCATTTCCAATCCATTTGGGTTTGCAATAAAGCGCAAATCCAATGGGGATGTGCTCTTCAACTCTTCCTATGGGAACTTGGTCTTCAAAGATCAGTACCTGGAGGTCACCACTGGCCTTCCTGCAACAGCTTCCCTGTATGGATTGGGCGAGAACACGCAGCCCAACGGGATCAAAATTCTTCCCAAAGAAGCTTATACCCTGTACACAACTGACATTTCTGCAATAAATCTGAATACAGATTTGTATGGCTCCCATCCTTTTTACATGGATGTAAGGAACGGAGGAATCTCTCATGGAGTTCTGCTGTTGAACAGCAATGGGATGGACGTTTTCTATACTGGTAATGCATTGACCTACAAGGTCATCGGGGGCGTGCTTGACTTCTACTTCTTTGCAGGGACTTCTCCATTGGATGTCGTTCAGCAGTATACTGCCCTCATTGGCCGCCCAGTTGCCCAGCCCTACTGGGCCTTTGGGTTTCATCAATGCAGGTGGGGATACAAGAACGTATCAGACATAACGAATGTGGTGGAAAACTATAACAAATCTCAGATACCTCTGGATGTTATATGGAACGATGATGACCACATGGATGGAGCCAAAGACTTCACCCTTGACCCTATCAACTATCCTGAATATAAGCTGCGTCCCTTCCTTGACCGAATTCATGCAAATGGAATGAGATATGTCGTCCTTATCGACCCAGGGATTGCCATTAACACGAGCTACGGCACGTTCCAGCGAGGTATGGCGGACGACGTTTTCATAAAGCACGACGGGAGTCCGTTCTTGGGTCAGGTGTGGCCCGGCGCCGTGTACTTTCCGGACTTCCTGAACCCAAAGACGGTGAATTTCTGGGCCGACGAGATCTCCCGCTTCCACCAAATGGTCCCCGTGGACGGTCTCTGGATCGACATGAACGAGATCTCCAATTTCTGCAGTGGCAAGTGCTCCATCCCCACAAACCGGAGCTGCCCGGGCACGGGTTTCCCATGGGATTGCTGCCTCGACTGCACAAACATCACCGCCACTCGATGGGACGTGCCACCCTACAAGATCAACGCCTCCGGTACCCAGGTCCCGCTGGGGTTCAAGACCATCGCCACCAGCTCCGTCCACTACAACGGCGTCCTCGAGTACGACGCCCACAGCCTCTATGGCTTATCGCAGGCCATCGCCACGCACAAGGCGCTCCAGAATCTGTTGAACAAGCGCCCATTCGTGCTCACGCGCTCCACCTTCGTGGGGTCAGGGTCATATGCTGCGCACTGGACGGGAGACAACAAAGCCACTTGGGAGGATCTCCGCTACTCAATCTCGACCATACTCAACTTCGGCATGTTCGGGATGCCCATGGTGGGCGCTGACATCTGCGGCTTCTATCCCGACACCACGGAGGAGCTCTGCGGGCGGTGGATTCAGTTGGGGGCCTTTTACCCCTTCAGCAGAGACCATTCCAATCTTGCCAGCAAACGCCAGGAGCTTTATCTCTGGGATTCCGTTGCCAAATCAGCAAGAAAGGCATTAGGGCTGCGTTACCGCCTTCTCCCTTATCTTTACACATTGAACTACGATGCCCATACTACTGGAGCACCCATTGCCCGCCCTTTGTTTTTCTCATTCCCACAGGACCCAGAAACCTACGCTGTGAGCAAACAGTTTCTTCTCGGCCCAGGGGTTCTAATTTCTCCCGTGCTCTATAACAAAACCACATCGGTGAATGCTTATTTCCCAAAGGGGAGCTGGTATAACCTTAACGATATGACCATGGCCGTGAAGTCCAGTGGGCAGTATGTTACCCTCCAAGCTCCCATGGATACCATTAATGTTCATGTGTGTGAGGGCATGATTCTGCCCATGCAAAGAGGGGGAATGACTACTACGGCGGCCAGGATGACCCCTTTCACTTTGATTATTGCGTTCCCACTGGGGTTCCAGTCTACGGGAGGGAAGGCCAAAGGCCATCTCTTTTTGGATTCGGGTGAAGATGTTGATATGAAGATTGCAGAGGGGAAGTCTACATATGTTGATTTCTCCGCCGAGTCGGATGGGAAGAAAGTGAGACTAGTGTCCCAGGTTGAGAGTGGATCGTATGGTCTTAGTCAAGGGTGGGTAGTGGAGAAATTGATGATCCTGGGACTCTCCAAATCTCATTTATCTTCTCAGATTGCATTCCAGTTGGATGGGAAGCCATTCACTTCCTCATCTTTTACATATTCAGTACAACCCCTTTCCACCAGTGCTGAGCAGAGCCAGGGCGGCGGTGCAATAATGGAATTGAACGGATTGGCTCTCCCAGTAGGTAGGAACATTGACCTTTCATGGACTTTGTAG___CTTGATTCCTAAGAAAAGAGCACATGCGCTCTGATTTGTGTTTTGCGGTAACAAATTTCGTGAGTTATACACGTAAATCTGGTATGTAATGAAATTCCAATAACATCTTGAACAAGTCGTTATACATGCTGTCGCTTGGAAGTGAATGGTGGAAACTTTAATCTGTGAGCGTCAGGAGTTCCATAGGGTTGACACGTTTGCCAAAGCTGGTTAGGTGTAAAAATATAATGAGTTGTTTTTAGCCAC

Fln Alignment:

Contig15816___MLTMGSLPVLTFICVVCALWSLGHGQQVGYGYRLVSVDQGSDGSLIGSLELIQQTNTYGPDIPHLRLYVKHETEDRVRVHITDAQTKRWEVPQELLSREQAPADLPVSSRKAKPAKSAFEFSKFAGGELIVSFISNPFGFAIKRKSNGDVLFNSSYGNLVFKDQYLEVTTGLPATASLYGLGENTQPNGIKILPKEAYTLYTTDISAINLNTDLYGSHPFYMDVRNGGISHGVLLLNSNGMDVFYTGNALTYKVIGGVLDFYFFAGTSPLDVVQQYTALIGRPVAQPYWAFGFHQCRWGYKNVSDITNVVENYNKSQIPLDVIWNDDDHMDGAKDFTLDPINYPEYKLRPFLDRIHANGMRYVVLIDPGIAINTSYGTFQRGMADDVFIKHDGSPFLGQVWPGAVYFPDFLNPKTVNFWADEISRFHQMVPVDGLWIDMNEISNFCSGKCSIPTNRSCPGTGFPWDCCLDCTNITATRWDVPPYKINASGTQVPLGFKTIATSSVHYNGVLEYDAHSLYGLSQAIATHKALQNLLNKRPFVLTRSTFVGSGSYAAHWTGDNKATWEDLRYSISTILNFGMFGMPMVGADICGFYPDTTEELCGRWIQLGAFYPFSRDHSNLASKRQELYLWDSVAKSARKAXXXXXXXXXXXXXXXXDAHTTGAPIARPLFFSFPQDPETYAVSKQFLLGPGVLISPVLYNKTTSVNAYFPKGSWYNLNDMTMAVKSSGQYVTLQAPMDTINVHVCEGMILPMQRGGMTTTAARMTPFTLIIAFPLGFQSTGGKAKGHLFLDSGEDVDMKIAEGKSTYVDFSAESDGKKVRLVSQVESGSYGLSQGWVVEKLMILGLSKSHLSSQIAFQLDGKPFTSSSFTYSVQPLSTSAEQSQGGGAIMELNGLALPVGRNIDLSWTL
Q8VWV9_______________MLTMGSLPVLTFICVVCAVWSLGHGQQVGYGYRLVSVDQGSDGSLIGSLELIQQTNTYGPDIPHLRLYVKHETEDRVRVHITDAQTKRWEVPQELLSREQAPADLPVSSRKAKPAKSAFEFSKFAGGELIVSFISNPFGFAIKRKSNGDVLFNSSYGNLVFKDQYLEVTTGLPATASLYGLGENTQPNGIKILPKEAYTLYTTDISAINLNTDLYGSHPFYMDVRNGGISHGVLLLNSNGMDVFYTGNALTYKVIGGVLDFYFFAGTSPLDVVQQYTALIGRPVAQPYWAFGFHQCRWGYKNVSDITNVVENYNKSQIPLDVIWNDDDHMDGAKDFTLDPINYPEYKLRPFLDRIHANGMRYVVLIDPGIAINTSYGTFQRGMADDVFIKHGGSPFLGQVWPGAVYFPDFLNPKTVNFWADEISHFHQMVPVDGLWIDMNEISNFCSGKCSIPTNRSCPGTGFPWECCLDRTNITATRWDVPPYKINASGTQVPLGFKTIATSSVHYNGVLEYDAHSLYGLSQAIATHKALQNLLDKRPFVLTRSTFVGSGSYAAHWTGDNKATWEDLRYSISTILNFGMFGMPMVGADICGFYPDTTEELCGRWIQLGAFYPFSRDHSNLASKRQELYLWDSVAKSARKALGLGYRLLPYLYTLNYDAHTTGAPIARPLFFSFPQDPETYAVSKQFLLGPGVLISPVLYNKTTSVNAYFPKGSWYNLNDMTMAVKSSGQYVTLQAPMDTINVHVCEGMILPMQRGGMTTTVARMTPFTLIIAFPLGFQSTGGKAKGHLFLDSGEDVDMKIAEGKSTYVDFSAESDGKKVRLVSQVESGSYGLSQGWVVEKLMILGLSKSHLSSQIAFQLDGKPFTSSSFTYSVQPLSTSAEQSQGGGAIMELNGLALPVGRNIDLSWTL

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
395		33		33	0.997753
396		33	33	33	0.997753
397		33	33	33	0.997753
398			33	66	0.997452
399			33	66	1.0
434		83		16	0.994512
479	80		20		0.995493
608		12		87	0.992554
830	87			12	0.992554
877		12		87	0.992554
888	87		12		0.992554
1394	87			12	0.992554
1444	20	80			0.995493
1676	33		66		0.997452
1800			33	66	0.997452
1813		33		66	0.997452
2008	66		33		0.997452
2335		88	11		0.923564
2343		88	11		0.923564
2687		80		20	0.995493
3061	0		97		0.944306
3146	93			0	1.0
3220		2		97	0.999029
3258		2	17	79	1.0
3261	80	6	13		0.999961
3271		40		60	1.0
3310	11		88		0.923564
3344			57	42	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain