SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15767

Length: 1450 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene15767 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[U] COG5143 Synaptobrevin/VAMP-like protein	-	-	2.0e-10	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Vesicle-associated membrane protein, putative	-	-	2.959e-15	-

Source	Gene names
Sma3	109N23.2; ACRE101; AT2G33120; At1g04740; At1g04750; At1g04760; At2g32670; At2g33110; At2g33120; At3g54300; At4g15780; CHLREDRAFT_128777; CHLREDRAFT_195403; CHLREDRAFT_195404; F13M7.25; F13M7.26; F13M7_23; F24B22.260; F24L7.19; F25I18.15; FCAALL.378; GSVIV

Source	GOs	Term	Type	Identity
Sma3	endosome	GO:0005768	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	SNARE complex	GO:0031201	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	protein targeting to vacuole	GO:0006623	Biological Process	-
Sma3	vacuole organization	GO:0007033	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Synaptobrevin	IPR001388	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Longin	IPR010908	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR015706	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G32670.1	ATVAMP725, VAMP725 vesicle-associated membrane protein 725 chr2:13857941-13859346 FORWARD LENGTH=285	80%
RefSeq	Arabidopsis thaliana	NP_180826.2	vesicle-associated membrane protein 725 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002304708.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNA8

Fln msg:

Fln protein: MGQQSLIYSFVARGTVVLAEYTQFTGNFTTIANQCLQKIPASNNKFTYNCDRHTFNYLVEDGYTYCVVADESVGRQLPIAFLERIKDDFKKRYGGGKADTAVAHSLNKDFGPKLKDHMQYCVDHPEEINKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRFQAQDFQKQGTQIRRKMWFQNMKVKLVVLGIVFVLILIIWLSICHGFKCN*

Protein Length: 222

Fln nts: ATGGGGAAACATAGCGCATTTGGGTTCGGGGTCCTGTCCTGACTGGAATTTTTCTTTCACTCGATCTGCCTCGTCTGGATTGGCCTGGACTGAAATACATTGAACATTGGAGTTGTCGAGCGCGAGAT_-_ATGGGTCAGCAGTCCCTCATTTACAGCTTTGTTGCAAGGGGCACGGTGGTCTTGGCTGAGTACACCCAATTCACGGGCAATTTCACAACAATTGCCAATCAATGCCTTCAGAAGATTCCTGCCAGCAATAATAAGTTCACCTACAATTGCGATCGTCACACATTCAATTATCTCGTCGAAGATGGTTACACATACTGTGTTGTTGCAGATGAATCAGTTGGAAGACAACTACCAATTGCCTTTCTGGAGCGCATTAAGGATGACTTCAAGAAACGATACGGTGGTGGAAAAGCTGACACAGCTGTTGCTCACAGCCTCAATAAAGACTTTGGACCAAAATTGAAAGATCATATGCAGTATTGTGTTGATCACCCAGAAGAGATTAACAAACTTGCAAAAGTGAAGGCTCAGGTTTCTGAAGTTAAAGGCGTAATGATGGAGAATATTGAGAAGGTCCTTGATCGGGGTGAAAAGATAGAACTTTTGGTTGACAAAACAGAGAACCTTCGATTTCAGGCTCAAGACTTCCAGAAGCAGGGAACACAGATTCGCCGAAAAATGTGGTTTCAGAACATGAAAGTCAAGCTGGTTGTTCTTGGAATTGTCTTTGTGTTGATTCTTATAATCTGGCTCTCTATTTGCCACGGATTTAAGTGCAATTAA___TCTTGATTACATGGCAGTCCTTTCTAGATACAATCCTTTCGAGGCATTTATATTCATTTTTTGGCAGCTTGGCTTATAATAGATGCAGGCTTTCTCTTTGAAAAGAGTATCTTTTGTGTTGTGTCTGAGTAATGTATTTCATTCACTTGGATACCGTCATCATTAGATACTGATTATCTATGTTTTTCTCTGACGAGGGACAATGCCTCGACTTTTCATAGTTTAGGTTATTGGTGCTACCCATCAGCTGTGATGTCAATCTCTTTTATAAATATGAATCCCTGCTTTTGGTTTTCAATTTTAACGTTCACATAGCCTCTATTATCAGCAGCGCTTAATTAACGCGGGAAACCTTTGGATAAAATCCATTTTTGTCACCTCTGGTATTGTGCATGATAAGGAACATGTCTTTGGTTTATGTTTTATTTATTGCTTCTTATGGACAAGTTGAGAGCACGGGGCTTAAATTTGGTTCCCATCAATAGCCTCTTACTTCATAAGCATTACATGTTTCCAAATTAAATTGCCATTTAATTCCATGGCATGGACAATAAGAGTTATGGCAGTTCATGATTATAACGTATTTAAGATTCGCCTTGTTTGATCTGCTAAATTGGTTGGATCATGAAAACTAGCTACATGGGAAAAATTTGAATGGG

Fln Alignment:

Contig15767___MGQQSLIYSFVARGTVVLAEYTQFTGNFTTIANQCLQKIPASNNKFTYNCDRHTFNYLVEDGYTYCVVADESVGRQLPIAFLERIKDDFKKRYGGGKADTAVAHSLNKDFGPKLKDHMQYCVDHPEEINKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRFQAQDFQKQGTQIRRKMWFQNMKXXXXXXXXXXXXXXXXXXXICHGFKCN
A9NNA8_______________MGQQSLIYSFVARGTVVLAEYTEFKGNFTTIAAQCLQKLPASNNKFTYNCDNHTFNYLVEDGFAYCVVADESVGRQVPMAFLERVKEDFKRRYGGGRADTAVGNSLNRDFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRFQAQDFQKQGTQLRRKMWFQNMKVKLIVLGIVVALILIIVLSVCHGFNCS

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
257		33		66	0.997452
494		83		16	0.994512
970	90	10			0.90298
971		10		90	0.90298
1087	95		4		0.996599
1193	2			97	0.941605
1200			97	2	0.946738
1398	68		20		1.0
1400	97		2		0.971188
1406		97	2		0.97849
1410		96	3		0.980996
1412	3		96		0.980996
1414	96	3			0.980996
1417	3		96		0.982166
1419	96		3		0.987242
1422	3	96			0.988939
1425	94	1			0.941977
1428		96	3		0.993037
1438	2			91	0.999993
1439	88	4			0.999992

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain