SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15762

Length: 2186 nt

UniGene Fasta

>sp_v3.0_unigene15762
ATGGGGGGAATAGAGGAACAGAAAGCCCCAATGATCGGACCTGTGAAAGAATTCGACACATTTTGCTTATGGCTAAATTTAAGAATCTCGTTCGATTTGGTACGGATTTGCTGTATTTTGCTAACAAAACAACATGGAACCATCGAAGGAAGCAATAGAGATATAAAGCATTCGGTTCATATGATTGCAGTCGCGGGGATGCATCAGCAATTACCCGAGAGATGAGAGGAGAAGCTACGGACATCTTTTCGACATCTGCAGTGCAGACATTACTAATCCCAGACAGTCGATGCCCAATTCATAGCGTGGAGATTCAGTAACAGGAAGAAGCCGAAGAGAAGAAAATGGCGAAATTCTTTACTTGTCCTTCATCTCTGCATATACCCACGTCGTCCTCGGAGGTTTATTCTAATTGGAAATCACGCGCTCTGTTAAGCCTGCCATCTGATGACAGCTTTCGCAGGCAGTTGCGCCTGAACAACGGAGGGGAAGAAGGTCCTGTTAAACGGGTTATTTGTTCATCCTCTGCGCCTTCTGCGAGGAGGAGATGGTGCAACGCATCTTCGGCAATCTCCATTAACCATCATGATACATCACAATTTGAAGAGGCAACGATGAGCAGACAACTTGAGGATGACTCTGATGTGCTTATCGAGTGTAGAAACGTTCACAAGTCATTTGGGAAGAAGAAAGATCAGAGAGGACGAAGCGGTCAGGTCTTTCAAAGTGCAGCACTCTTCGATTCACTTACGGTCCGGGAGAATGTTGGCTTTATGTTATATGAGCATTCTAACCTACCCAAGGATAGAATAGCTGAGCTTGTTACCGAAAGTCTAGAAGCTGTGGGCTTGAAGGGAGTAGAAGATCGGTTGCCATCAGAGTTGTCTGGAGGCATGAAAAAGCGAGTAGCATTGGCTCGGGCCATTATATATGATGATTCACATAAAGCAATTAAACCTGAAGTTGTAATGTATGATGAACCAACTGCTGGGCTTGATCCAATTGCATCCACTGTTGTCGAGGATCTTATCCGAGCAATGCACATTAAAGGACGTGATGCAGTGGGGAAACCTGGAAAGATTGCTTCGTATATTGTTGTAACCCATCAGCATAGCACAATAAGGCGAGCAGTTGACAGGCTGCTCTTCCTCCACGAAGGTCAGATAGTTTGGCAGGGTATGACACACGAGTTTGACACATCAACCAATCCCATTGTGCGACAGTTTGCAGCAGGGAGCTTGGAGGGACCTATTAAATACTAAACTAGTTATATGAAAAGTCTATTGTCAATAAAACTACCATCCTTACAAAATTGGTAGGTAAGAAGAGAATGCCTGAAAGATTTGTTGCATGTACACATGTATCAATAACAACAAATTTATTTTTATTTATCATACTTGTTTTAATTTTATTGTTCCTATGAATCTTTATCACTGGTCTTTACTGGGTAGGTGCTTGCTTGAGACAATCAGGTCACGTACTCTATAGTGGTCTTCTGGTATTTGAAGACATAAAAACCGTCAGGTCCTTAAAATACATTTCTACTTCACAGATGATGCTTTAAGTATCAGTCGATCGTTGCAAGTGAATTCTGAAGTTGCTGCTTGGCAACTTTAAGGAATATGGTCATACAGGGTCTATCTCCCATGCGCTTGCTTGCAGCTTGAGACAATCAGGCCACGTACTCTATAGTGGTCTTCTGGTATTTGAAGGCATAAAAACCGTCAGGTCCTTAAAATACATTTCTACTTCACAGATGATGCTTTAAGTATCAGTCGATCGTTGCAAGTGAATTCTGAAGTTGCTGCTTGGCAACTTTAAGGAATATGGTCATACAGGGTCTATCTCCCATGGAGTAACAAATTTGTTCTGGTTATGATATATTGATTATCTTGACATCTCTCTTACAAACATACCGCAATGTTTGAGTTGGATGCTGTTCTATAAGATTGCAAACATGATGCTTAAATGGCTTCTGTATTTCCATATTTATCAGTACCTTTACATTTAGGTCCATGATCAAAAACTCAGTACATCATAAACATCTTAAGTAGAAGAAACACCCTCTCCTCTTCAATTCCTGCCAGGAAATGTTTATGGAAGATTCCAGCCAGGAAACTTCTGGACAGGTATGCTAAGTCGTTTTTTAATCGTAAAATATCTCTGGTCCATTTCCTCCATTCATT

Ace file of the UniGene sp_v3.0_unigene15762

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter ATP-binding protein, putative n=1 Tax=Oryza sativa Japonica Group RepID=Q6ASX4_ORYSJ	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Sma3	ABC transporter	-	-	6.56e-06	-

Source	Gene names
Sma3	At1g65410; B1130H05.8; GSVIVT00025111001; LOC_Os03g46740; MICPUCDRAFT_5034; MICPUN_108095; NAP11; OSJNBa0039O18.1; OSTLU_16468; Os03g0670100; OsI_12950; Ot08g02250; PHYPADRAFT_116997; POPTRDRAFT_246085; POPTRDRAFT_275971; RCOM_1437480; T8F5.19; VITISV_000

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G65410.1	ATNAP11, TGD3, NAP11 non-intrinsic ABC protein 11 chr1:24295362-24297332 FORWARD LENGTH=345	77%
RefSeq	Arabidopsis thaliana	NP_564850.1	protein triGALACTOSYLDIACYLGLYCEROL 3 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002331770.1	predicted protein, partial [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADF3

Fln msg: your sequence is longer than subject: 306 - 268

Fln protein: MAKFFTCPSSLHIPTSSSEVYSNWKSRALLSLPSDDSFRRQLRLNNGGEEGPVKRVICSSSAPSARRRWCNASSAISINHHDTSQFEEATMSRQLEDDSDVLIECRNVHKSFGKKKDQRGRSGQVFQSAALFDSLTVRENVGFMLYEHSNLPKDRIAELVTESLEAVGLKGVEDRLPSELSGGMKKRVALARAIIYDDSHKAIKPEVVMYDEPTAGLDPIASTVVEDLIRAMHIKGRDAVGKPGKIASYIVVTHQHSTIRRAVDRLLFLHEGQIVWQGMTHEFDTSTNPIVRQFAAGSLEGPIKY*

Protein Length: 307

Fln nts: ATGGGGGGAATAGAGGAACAGAAAGCCCCAATGATCGGACCTGTGAAAGAATTCGACACATTTTGCTTATGGCTAAATTTAAGAATCTCGTTCGATTTGGTACGGATTTGCTGTATTTTGCTAACAAAACAACATGGAACCATCGAAGGAAGCAATAGAGATATAAAGCATTCGGTTCATATGATTGCAGTCGCGGGGATGCATCAGCAATTACCCGAGAGATGAGAGGAGAAGCTACGGACATCTTTTCGACATCTGCAGTGCAGACATTACTAATCCCAGACAGTCGATGCCCAATTCATAGCGTGGAGATTCAGTAACAGGAAGAAGCCGAAGAGAAGAAA_-_ATGGCGAAATTCTTTACTTGTCCTTCATCTCTGCATATACCCACGTCGTCCTCGGAGGTTTATTCTAATTGGAAATCACGCGCTCTGTTAAGCCTGCCATCTGATGACAGCTTTCGCAGGCAGTTGCGCCTGAACAACGGAGGGGAAGAAGGTCCTGTTAAACGGGTTATTTGTTCATCCTCTGCGCCTTCTGCGAGGAGGAGATGGTGCAACGCATCTTCGGCAATCTCCATTAACCATCATGATACATCACAATTTGAAGAGGCAACGATGAGCAGACAACTTGAGGATGACTCTGATGTGCTTATCGAGTGTAGAAACGTTCACAAGTCATTTGGGAAGAAGAAAGATCAGAGAGGACGAAGCGGTCAGGTCTTTCAAAGTGCAGCACTCTTCGATTCACTTACGGTCCGGGAGAATGTTGGCTTTATGTTATATGAGCATTCTAACCTACCCAAGGATAGAATAGCTGAGCTTGTTACCGAAAGTCTAGAAGCTGTGGGCTTGAAGGGAGTAGAAGATCGGTTGCCATCAGAGTTGTCTGGAGGCATGAAAAAGCGAGTAGCATTGGCTCGGGCCATTATATATGATGATTCACATAAAGCAATTAAACCTGAAGTTGTAATGTATGATGAACCAACTGCTGGGCTTGATCCAATTGCATCCACTGTTGTCGAGGATCTTATCCGAGCAATGCACATTAAAGGACGTGATGCAGTGGGGAAACCTGGAAAGATTGCTTCGTATATTGTTGTAACCCATCAGCATAGCACAATAAGGCGAGCAGTTGACAGGCTGCTCTTCCTCCACGAAGGTCAGATAGTTTGGCAGGGTATGACACACGAGTTTGACACATCAACCAATCCCATTGTGCGACAGTTTGCAGCAGGGAGCTTGGAGGGACCTATTAAATACTAA___ACTAGTTATATGAAAAGTCTATTGTCAATAAAACTACCATCCTTACAAAATTGGTAGGTAAGAAGAGAATGCCTGAAAGATTTGTTGCATGTACACATGTATCAATAACAACAAATTTATTTTTATTTATCATACTTGTTTTAATTTTATTGTTCCTATGAATCTTTATCACTGGTCTTTACTGGGTAGGTGCTTGCTTGAGACAATCAGGTCACGTACTCTATAGTGGTCTTCTGGTATTTGAAGACATAAAAACCGTCAGGTCCTTAAAATACATTTCTACTTCACAGATGATGCTTTAAGTATCAGTCGATCGTTGCAAGTGAATTCTGAAGTTGCTGCTTGGCAACTTTAAGGAATATGGTCATACAGGGTCTATCTCCCATGCGCTTGCTTGCAGCTTGAGACAATCAGGCCACGTACTCTATAGTGGTCTTCTGGTATTTGAAGGCATAAAAACCGTCAGGTCCTTAAAATACATTTCTACTTCACAGATGATGCTTTAAGTATCAGTCGATCGTTGCAAGTGAATTCTGAAGTTGCTGCTTGGCAACTTTAAGGAATATGGTCATACAGGGTCTATCTCCCATGGAGTAACAAATTTGTTCTGGTTATGATATATTGATTATCTTGACATCTCTCTTACAAACATACCGCAATGTTTGAGTTGGATGCTGTTCTATAAGATTGCAAACATGATGCTTAAATGGCTTCTGTATTTCCATATTTATCAGTACCTTTACATTTAGGTCCATGATCAAAAACTCAGTACATCATAAACATCTTAAGTAGAAGAAACACCCTCTCCTCTTCAATTCCTGCCAGGAAATGTTTATGGAAGATTCCAGCCAGGAAACTTCTGGACAGGTATGCTAAGTCGTTTTTTAATCGTAAAATATCTCTGGTCCATTTCCTCCATTCATT

Fln Alignment:

Contig15762___RGRSGQVFQSAALFDSLTVRENVGFMLYEHSNLPKDRIAELVTESLEA-VGLKGVEDRLPSELSGGMK----KRVALARAIIYDDSHKAIKPEVVMYDEPTAGLDPIASTVVEDLIRAMHIKGRDAVGKPGKIASYIVVTHQHSTIRRAVDRLLFLHEGQIVWQGMTHEFDTSTNPIVRQF
D5ADF3_______________RRRVGMLFQTPALFDG-NVADNIKYG-------PALRGLKLSDEEVSKYLGWADLESSLASRSVGGLSVGQAQRVALARTL-------ANEPEVLLLDEPTSALDPISTQHIEESIGKL---------KRGKGMTIIMVSHSVKQIQRIADVVFLLVDGQIVETLKPDQLSNANHPMARMF

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
191	25		75		0.996473
193		75	25		0.996473
195		75	25		0.996473
255	33			66	0.997452
644		20		80	0.995493
685			83	16	0.994512
687	16		83		0.994512
688	83			16	0.994512
691	83		16		0.994512
693	16	83			0.994512
695	16	83			0.994512
696			83	16	0.994512
697	16			83	0.994512
700	16			83	0.994512
704	83			16	0.994512
705			83	16	0.994512
706			83	16	0.994512
708		16	83		0.994512
709			16	83	0.994512
712			66	33	1.0
713		66		33	1.0
714			16	83	0.994512
715			16	83	0.994512
718	83			16	0.994512
903	87		12		0.992554
1447	14	85			0.993533
1473		88		11	0.923564
1512	88		11		0.923564
1706	16		83		0.994512
1707		16		83	0.994512
1709		16		83	0.994512
1778			87	12	0.992554
1920		85		14	0.993533
1979	11			88	0.923564
1981	12			87	0.992554
1982			87	12	0.992554
2109	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain