SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15713

Length: 511 nt

UniGene Fasta

>sp_v3.0_unigene15713
ATGGGGAAGGCAAAAGGATTTTCATGTACGATTTGCCTGCCAAGTTCAATTATCAGTTGCTGCACAATTGCAGCGGTAAGTTAGTCTCGTGGCTCGATTTCTGCCGGCACATTGAAAATCAGGGGCTTGGGGCTTCGATTCGCAACAGGACGGGATGGTACGCTACAGATCTGTACATGCTGGAGGTCGTTTTCCACAATCGGATGAGAAAGTACCGGTGCCTTGTCTCTGATGCGCGCTTGGCCGATGCTTTCTTTATACCCTATTACATCGGTCTGGATGCCCTGCGTTTTCTGTTCGGGGAAGAGCGGGACCGGGCCTCGAATCACGGGTTAGAGCTGGCTTCTTGGCTGGACCAAAAGGCGAGGTGGATCTGGAGGAAAAGGGGCGGGATCGACCATTTTATGGTCACGGGGAGGACCGTTTGGGACCTGAGCAGGGCTCCCTGGACCGAGGGAATTAATTGGGGCACCAGTTTCTTGGAGCTCCCGGCCATGGCCAATGTCACGAC

Ace file of the UniGene sp_v3.0_unigene15713

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	exostosin-like protein [Arabidopsis thaliana] gb\|AAC33230.1\| hypothetical protein [Arabidopsis thaliana] gb\|ABE65870.1\| exostosin family protein [Arabidopsis thaliana] gb\|AEC08200.1\| exostosin-like protein [Arabidopsis thaliana]	-	-	1.0e-35	43%
FL-Next	sp=Xyloglucan galactosyltransferase KATAMARI1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	40%

Source	Gene names
Sma3	At2g29040; GSVIVT00007298001; PHYPADRAFT_112696; PHYPADRAFT_112772; PHYPADRAFT_181249; PHYPADRAFT_42584; PHYPADRAFT_43964; POPTRDRAFT_784390; RCOM_0251370; VITISV_000735;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	beta-lactamase activity	GO:0008800	Molecular Function	-
Sma3	antibiotic catabolic process	GO:0017001	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Beta-lactamase, class-B, conserved site	IPR001018	-	0.0	-
Sma3	Exostosin-like	IPR004263	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7XJ98

Fln msg: Distance to subject end: 297 aas, your sequence is shorter than subject: 169 - 619

Fln protein: GEGKRIFMYDLPAKFNYQLLHNCSGKLVSWLDFCRHIENQGLGASIRNRTGWYATDLYMLEVVFHNRMRKYRCLVSDARLADAFFIPYYIGLDALRFLFGEERDRASNHGLELASWLDQKARWIWRKRGGIDHFMVTGRTVWDLSRAPWTEGINWGTSFLELPAMANVT

Protein Length: 170

Fln nts: ATGGGGAAGGCAAAAGGATTTTCATGTACGATTTGCCTGCCAAGTTCAATTATCAGTTGCTGCACAATTGCAGCGGTAAGTTAGTCTCGTGGCTCGATTTCTGCCGGCACATTGAAAATCAGGGGCTTGGGGCTTCGATTCGCAACAGGACGGGATGGTACGCTACAGATCTGTACATGCTGGAGGTCGTTTTCCACAATCGGATGAGAAAGTACCGGTGCCTTGTCTCTGATGCGCGCTTGGCCGATGCTTTCTTTATACCCTATTACATCGGTCTGGATGCCCTGCGTTTTCTGTTCGGGGAAGAGCGGGACCGGGCCTCGAATCACGGGTTAGAGCTGGCTTCTTGGCTGGACCAAAAGGCGAGGTGGATCTGGAGGAAAAGGGGCGGGATCGACCATTTTATGGTCACGGGGAGGACCGTTTGGGACCTGAGCAGGGCTCCCTGGACCGAGGGAATTAATTGGGGCACCAGTTTCTTGGAGCTCCCGGCCATGGCCAATGTCACGAC

Fln Alignment:

Contig15713___GKRIFMYDLPAKFNYQLLHNCSGKLVSWLDFCRHIENQGLGASIRN------RTGWYATDLYMLEVVFHNRMRKYRCLVSDARLADAFFIPYYIGLDALRFLFGEERDRASNHGLELASWLDQKARW-IWRKRGGIDHFMVTGRTVWDLSRAPWTEGINWGTSFLELPAMANVT
Q7XJ98_______________GKYIYVHNLPSKFNEDMLRDCK-KLSLWTNMCKFTTNAGLGPPLENVEGVFSDEGWYATNQFAVDVIFSNRMKQYKCLTNDSSLAAAIFVPFYAGFDIARYLWGYNISRRDAASLELVDWLMKRPEWDIMR---GKDHFLVAGRITWDFRRLS-EEETDWGNKLLFLPAAKNMS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain