SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15707

Length: 1580 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene15707

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH	-	-	9.80909e-45	49%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	41%
Sma3	Copia-type polyprotein	-	-	1.613e-10	-

Source	Gene names
Sma3	AT4g02960; At2g13940; At2g15650; AtRE2; AtRE2-1; B1110B01.4; F11I4_21; F14M2.5; H0112G12.6; H0512B01.8; LOC_Os03g05850; LOC_Os03g20490; LOC_Os03g24620; LOC_Os10g02700; LOC_Os10g04074; LOC_Os10g07460; LOC_Os10g39530; LOC_Os11g01090; LOC_Os11g06960; LOC_Os1

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Transcription factor GRAS	IPR005202	-	-
Sma3	Domain of unknown function DUF1336	IPR009769	-	-
Sma3		IPR010256	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: your sequence is shorter than subject: 181 - 542

Fln protein: LRYVRGTVQFGIHYSAEAPLLVGFTDSDWAGDPDDRKSTAGYVFTLGSGPITWACKKQAAISLSSAEAEYRGAVEASKEALWLRQILSEFGFEQQHPTTLWCDNQSAIQLCKDPVQHQRSKHIELHMHFIRKLIYDHVLEVQYCPTDDQVADIFTKALTEAKFTKLRYMLGVQEVVTKGG*

Protein Length: 182

Fln nts: TACTTCGTTATGTTCGAGGTACAGTTCAGTTTGGGATTCATTATAGTGCAGAAGCTCCTCTATTGGTTGGTTTCACTGATTCTGATTGGGCTGGTGACCCTGATGATCGGAAGTCTACTGCTGGTTATGTCTTCACTCTTGGTTCAGGACCTATTACATGGGCTTGCAAGAAACAGGCTGCCATTTCTCTTTCGTCAGCAGAAGCAGAGTATCGTGGTGCCGTGGAAGCTAGTAAGGAAGCCTTGTGGCTTCGTCAGATCCTATCAGAGTTTGGCTTTGAGCAGCAGCATCCGACTACACTTTGGTGTGATAATCAAAGTGCCATTCAGCTATGCAAAGATCCAGTCCAGCATCAGCGCAGCAAACACATTGAACTACATATGCACTTCATCAGAAAGCTCATTTATGACCATGTTCTTGAAGTGCAATATTGTCCAACAGATGATCAGGTTGCAGACATCTTCACAAAGGCTCTCACAGAGGCGAAGTTCACTAAACTTCGATATATGCTTGGAGTTCAGGAAGTTGTCACTAAGGGGGGATAG___GCTCTAGTGCCTCCTTCCTTCTCCTATTGTGTCATATTTGTAAATCCTTCAATCCTATCCCGAGTTGTTCTTAAGGGGGGATGTTAGGATATTCCGACACATAGGAATAGTTAAGTTCAACTTGGTCTAGTATAGAGTTAGGTATAGAGTTAGGTAAAGTGTGTTTCTTTACCGTTGTACATTACCGTTGTACATTTTGTAACTTACAATCCGACGGTCACGATATGTAGTGATCCGACGGTTCACTCTCTCCTCGGTATTACCGACACTTGATCCGTGGCTTGACACCCGATTGGTCCATGAGTTCTATTTAAAGCGCATGGAGGGTCATTGTTCGGGTAATCCGTGCATGAGAGAAAGCTTATGTAAATTTTCATTCTTTGATTAATAAATTGCCTGAAGTAGCCACATTGGCACAGGCCGTAAACTGTTTCCCTCTTTGAGGGTTTTAACCACGTCAAAAATACTGGTGTATTGATTTGAGATCTGGTTGTGAGCGGTGTCCTTTTGGTGTTCTTTCTGAGGAACTCACCCTGTAAATTCCTACATGGTATCAGAGCTATTTGAGGGCCGCGTCCGTTGGTGATCCAAATCTGAAGCCGGTAGAACTGCATGCGGCTGTCGTTTCCTAGATCTACTGTTTCTGACTGCTTTCGGGCCGAGAGGACTGCTCTGTTGTGTTCGGAGCATCTGTTCCAGTGAAGAACCCCTTTCGTTTCACGCGAAAAGGTTTCCGGTAGCCCTATTTGCGTCATTTTTAAGATTTGGAGGTATACAGTGTTTATCTGCAGTTTACTGTTATTTTCTCTCTGGTTATTTCGGTTTCTGTTTATTTAGCTTTTTTTATTACCGGATCTATACCTTTCATTTCTGTGTATGCTCTTTGCCCTGCGACTCTGTGCGATCTGGGCAAATCAGAAACAGAAAGGAAGTTTTTTTTCTCATGCGTATGCTCTTTTCCCTGCACCTTAGTGTGATCTTGGAAAATCAGAAACATTGAGAAAAATATTTAGTTTTCGGCTAAAGCTAACTTTG

Fln Alignment:

Contig15707___RYVRGTVQFGIHYSAEAPL-----LVGFTDSDWAGDPDDRKSTAGYVFTLGSGPITWACKKQAAISLSSAEAEYRGAVEASKEALWLRQILSEFGFEQQHPTTLWCDNQSAIQLCKDPVQHQRSKHIEL
Q9M5J7_______________RYLHGTTSYGLCYQGRSGLDRVVDIHGFVDADWVGDLDHIRSTSGYVFNLFGGAISWMSKIQALVALSTTEAEYMVATHASQGSIWLQRLCSGIGLVQQ-VVRLDCEIQSAIFMAKNPAYDSKTNHIDV

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
294		66		33	0.997452
576			33	66	0.997452
745		50		50	1.0
762		75		25	0.996473
772		75		25	0.996473
773	25		75		0.996473
787		75		25	0.996473
799		66		33	0.997452
802	33			66	0.997452
808	33		66		0.997452
869	33		66		0.997452
889		33	66		0.997452
897	33		66		0.997452
1165		33		66	0.997452
1488			33	66	0.997452
1489	33			66	0.997452
1495		33		66	0.997452
1496		66		33	0.997452
1534		75	25		0.996473
1561	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain