SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15624

Length: 1059 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene15624

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2B n=2 Tax=Picea sitchensis RepID=A9NZJ5_PICSI	-	-	4.99997e-41	95%
FL-Next	sp=Histone H2B; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Histone H2B	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone-fold	IPR009072	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone H2B	IPR000558	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G22880.1	H2B, HTB2 histone B2 chr5:7652130-7652567 REVERSE LENGTH=145	83%
RefSeq	Arabidopsis thaliana	NP_197679.1	histone H2B [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002316408.1	histone H2, partial [Populus trichocarpa]	82%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
50		33	66		1.0
73		40		60	1.0
75		20	80		0.996423
77	80	20			0.996423
497	94		5		0.9982
504		91		8	1.0
626	10			90	0.90298
627		10		90	0.90298
628		10		90	0.90298
637		10		90	0.90298
638	20		80		0.999996
639		10	90		0.90298
699	16			83	0.994512
703		83		16	0.994512
721	75		25		0.996473
722	75		25		0.996473
860	14			85	0.993533
874			85	14	0.993533
982	8		91		0.999766
1007	66	33			1.0
1021		36		63	1.0
1051	13	86			0.999973

SSRs (tot: 1)

Start position	End position	Sequence	Length
315	327	AAG AAG AAG AAG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain