SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15509

Length: 1672 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene15509

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AE97_PICSI	-	-	0.0	88%
FL-Next	sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Pseudouridylate synthase	-	-	6.152e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Isomerases, Intramolecular transferases (mutases), Transferring other groups.	EC:5.4.99.-	-	1.263e-21	-

Source	Gene names
Sma3	F21M12.19; GSVIVT00035388001; LOC_Os12g09290; MtrDRAFT_AC140550g32v2; Os12g0194800; OsI_37759; OsJ_35509; PHYPADRAFT_131035; POPTRDRAFT_837350; RCOM_0759480;

Source	GOs	Term	Type	Identity
Sma3	pseudouridine synthase activity	GO:0009982	Molecular Function	-
Sma3	pseudouridine synthesis	GO:0001522	Biological Process	-
Sma3	tRNA processing	GO:0008033	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pseudouridine synthase I, TruA	IPR001406	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G09800.1	Pseudouridine synthase family protein chr1:3177121-3180336 REVERSE LENGTH=372	54%
RefSeq	Arabidopsis thaliana	NP_172451.2	tRNA pseudouridine synthase A [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002331109.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE97

Fln msg:

Fln protein: MNPQKVLKVGKPEQEERGNEEMSQRPVQRYLVAVEYIGTNFLGMQKQPNFRTVQGVLEDAFSKFVGQPVSSASSSRTDAGVHALANVCHVDVERISKRKPGEVLPPHEPEVVKRAVNHFLQKDAGDISVIDVRFVPMTFHARFRAQERTYYYRILSGKEPLPAFEKDRAWHVPEDLCLSCMQEACKVLIGHHDFSSFRAAGCQAKSPVKTLDELHVCEMPAWSAFPTSIDRNTRVNISATSCKHARSEVKTSLNNPVEMEGQVSLSNKRFMNQSQPDMLCQKENGNFGQEEVLEFGQRRGHRGYVVVARAQSFLYHQVRLLVGTLKVVGAGKLSVYDVERILKAQTITVAPPMAPACGLYLAAVKYDFSHNDVNQMEDDGE*

Protein Length: 383

Fln nts: AAAATAATAGAGCTAAACGCCATTGGTAACAGGAAGAGAGCTCTGGACGACGATACTCAAAGC_-_ATGAATCCGCAAAAAGTGTTGAAAGTCGGGAAACCAGAGCAAGAAGAAAGGGGCAACGAAGAGATGAGCCAAAGGCCAGTTCAGAGATATCTTGTAGCAGTGGAATACATCGGCACAAATTTCCTTGGCATGCAAAAACAGCCGAATTTCAGAACAGTTCAAGGGGTGCTTGAGGATGCCTTTAGCAAATTTGTTGGGCAGCCTGTTTCTAGTGCAAGCTCAAGTAGAACTGATGCGGGAGTACATGCATTGGCAAATGTATGCCATGTAGATGTCGAGCGCATCAGTAAGCGGAAGCCTGGTGAAGTGTTACCTCCACATGAACCTGAAGTCGTGAAAAGAGCTGTGAATCACTTTTTACAGAAAGATGCAGGTGATATATCTGTCATTGATGTCCGATTTGTGCCGATGACTTTTCATGCTCGCTTTAGAGCTCAGGAGCGCACTTACTACTACAGGATTCTTTCTGGTAAAGAGCCTTTACCTGCTTTTGAAAAGGATCGAGCATGGCATGTTCCTGAAGACTTGTGTCTCTCATGTATGCAGGAAGCATGTAAAGTCCTTATAGGACACCATGATTTTAGCTCCTTCCGAGCTGCAGGATGTCAGGCAAAATCCCCCGTCAAAACATTGGATGAACTCCATGTTTGTGAAATGCCAGCATGGTCTGCCTTTCCAACAAGTATAGATAGGAATACTCGAGTAAACATTTCAGCAACAAGTTGTAAACATGCGAGATCTGAAGTAAAAACGAGTTTAAATAATCCGGTTGAAATGGAAGGGCAGGTGTCTCTTTCTAATAAGAGATTTATGAATCAGAGTCAGCCTGATATGCTTTGTCAAAAAGAGAATGGAAATTTTGGTCAGGAGGAAGTTTTAGAATTTGGTCAGAGAAGGGGGCATCGTGGCTATGTAGTTGTTGCAAGGGCACAGTCATTTTTGTATCACCAGGTGCGGTTACTTGTTGGTACCTTGAAGGTTGTCGGAGCTGGAAAACTGTCTGTTTATGATGTTGAAAGAATCCTTAAAGCACAGACAATAACAGTAGCACCACCTATGGCCCCTGCCTGTGGCCTGTATCTTGCAGCAGTTAAGTATGACTTCAGTCATAATGATGTGAACCAGATGGAGGATGATGGCGAGTAA___CAGAAATGAACCTTTGTTCTTTTGTTCAGTTCCCATTCCATATTGGATTTTTGCAAAATATTCCATGATTTAGATGCCTTCATGGACCGATTCATTTTGGGTCATTGTCATTGAGAGACCCTACTAAGAGCATGGTCTTTACCTTCAATAGTAGTGATATAGGGATGCATCTTGTAGGGTTCATGAGGATTTTGCTATTAATGCCTTCTGAATTCATGGAAGTTTCTAGGTTGAAAGCTTCTTGACGCAGTTTATGCCTTTGCAATTAGCATGACACCATAAGAATTCATGCATGTAGACTCTTTGTGCTATAGGGCTAGAAGTTGGGTTTTGTATAGATTGGTAGTCCCAAGCACACGAGGGACTGATTTATGGTGTAGACAAGAAGCTAAATATTATGAGTTGAATGAGAGGCACTATAATACTTTTGATGTCACAATTTATAATGTGGAGAAAATTTTCA

Fln Alignment:

Contig15509___MNPQKVLKVGKPEQEERGNEEMSQRP-VQRYLVAVEYIGTNFLGMQKQPNFRTVQGVLEDAFSKFVGQPVSSASSSRTDAGVHALANVCHVDVERISKRKPGEVLPPHEPEVVKRAVNHFLQKDAGDISVIDVRFVPMTFHARFRAQERTYYYRILSGKEPLPAFEKDRAWHVPEDLCLSCMQEACKVLIGHHDFSSFRAAGCQAKSPVKTLDELHVCEMPAWSAFPTSIDRNTRVNISATSCKHARSEVKTSLNNPVEMEGQVSLSNKRFMNQSQPDMLCQKENGNFGQEEVLEFGQRRGHRGYVVVARAQSFLYHQVRLLVGTLKVVGAGKLSVYDVERILKAQTITVAPPMAPACGLYLAAVKYDFSHNDVNQMEDDGE
D5AE97_______________MNPQKVSRNGKPEQEERGNEDMSQWPGVQRYLVAVDYIGTNFAGMQKQPNFRTVQGVLEDAFNKFIGQPVSSASSSRTDAGVHALTNVCHVDVERISKRKPGEVLPPHEPEVVKRAVNHFLQKDAGDISIIDVRFVPMTFHARYRAQERTYYYRILSGKEPLSIFEKDRAWHVPEDLGLSCMQEACKVLVGHHDFSSFRASGCQAKSPIKILDELRVCEMPAWPAFPMSIDRTSRVNISATSCKHVSSEGKASFDNPVEMEGQVSLSKERFMNHGQPDMLCQEENGNFGQDEVLEFGHRRGHRGYVVVARAQSFLYHQVRLLVGTLKCVGTGKLSVDDVESILKARTITVAPPMAPACGLYLAAVKYDFSCNDVNQMEDNGE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
250	33		66		0.997452
414			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain