SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15259

Length: 448 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene15259
CCTTCGTCTTGGAAACATCGCCCCGGATTTCGAGGCAGAGACCACTGCTGGACCCATCAAATTCCATGATTGGATCGGTGACTCTTGGGCCATTCTCTTCTCGCATCCAGGAGACTTCACCCCCGTTTGCACCACTGAACTCGGAGAGGTCGCTCGCCGTGCTGGTGAATTTGCCAACCGCAACGTCAAACTTATCGGAATTTCTGCCAATGGCCTGCAAGATCACAACAAGTGGGTTGAAGATATAAACGAGTTCGGTGCTCGATACGGACCGACCAACGTGCAGTTCCCTATCATCGCCGACGAGGACCGATCAATCTCTACCCTCTATGATATGCTTGATGAGCAAGATGCCACTAACCGTGATGCGAAGGGTCTTCCCTTTACGATCCGCACTGTGTTCGTGATTGACCCTAAGAAAGTTATTCGATTAACCGTTTCTTACCCT

Ace file of the UniGene sp_v3.0_unigene15259 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cysteine peroxiredoxin n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0CY32_LACBS	-	-	0.0	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Gene names
Sma3	GSVIVT00019700001; PHATRDRAFT_14785; PHATRDRAFT_50084; PHYPADRAFT_161426; PHYPADRAFT_207612; POPTRDRAFT_832669; PtrcPrx1-Cys; RCOM_1002870; RCOM_1916960;

Source	GOs	Term	Type	Identity
Sma3	antioxidant activity	GO:0016209	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3		IPR012335	-	-
Sma3		IPR017936	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002312301.1	1-cys peroxiredoxin [Populus trichocarpa]	2.0e-36	45%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0B0

Fln msg: Distance to subject end: 77 aas, atg_distance in limit (1-15): atg_distance = 3, W2: There is no M at the beginning, your sequence is shorter than subject: 149 - 223

Fln protein: LRLGNIAPDFEAETTAGPIKFHDWIGDSWAILFSHPGDFTPVCTTELGEVARRAGEFANRNVKLIGISANGLQDHNKWVEDINEFGARYGPTNVQFPIIADEDRSISTLYDMLDEQDATNRDAKGLPFTIRTVFVIDPKKVIRLTVSYP

Protein Length: 150

Fln nts: CCTTCGTCTTGGAAACATCGCCCCGGATTTCGAGGCAGAGACCACTGCTGGACCCATCAAATTCCATGATTGGATCGGTGACTCTTGGGCCATTCTCTTCTCGCATCCAGGAGACTTCACCCCCGTTTGCACCACTGAACTCGGAGAGGTCGCTCGCCGTGCTGGTGAATTTGCCAACCGCAACGTCAAACTTATCGGAATTTCTGCCAATGGCCTGCAAGATCACAACAAGTGGGTTGAAGATATAAACGAGTTCGGTGCTCGATACGGACCGACCAACGTGCAGTTCCCTATCATCGCCGACGAGGACCGATCAATCTCTACCCTCTATGATATGCTTGATGAGCAAGATGCCACTAACCGTGATGCGAAGGGTCTTCCCTTTACGATCCGCACTGTGTTCGTGATTGACCCTAAGAAAGTTATTCGATTAACCGTTTCTTACCCT

Fln Alignment:

Contig15259___LRLGNIAPDFEAETTAGPIKFHDWIGDSWAILFSHPGDFTPVCTTELGEVARRAGEFANRNVKLIGISANGLQDHNKWVEDINEFGARYGPTNVQFPIIADEDRSISTLYDMLDEQDATNRDAKGLPFTIRTVFVIDPKKVIRLTVSYP
A9P0B0_______________LKLGDKVPDFVADSSEGPIKFYEYIDNSWAILFSHPNDFTPVCTTELGAVGKLMPEFEKRGIKVLALSCDEAERHKAWIEDIESFSE--GKGKVTYPILADPEREVAVKYGMLDPDE---KDKAGMSVTARAVFVIGPDKRLKLSILYP

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
428	25		75		0.996473
440	25			75	0.996473
443	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain