SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15080

Length: 2584 nt

UniGene Fasta

>sp_v3.0_unigene15080
CGTCGTGACCTTGGCTGTCACTCATTTCTTCTGGGCAGGGCCAAAGTGAGGGCTTGGAATTTACATTTTAGCTGGCCGTCTGAGTTGGCTGCGCTGAGTGAGGTTATTTGGCTTGGATGGATGGTTGAGCTGGCAGGGCCTCTGCAATTGGGGCGCTTTAAATGCGCATTTAAGAATAGTTTCCGACAGTGATAGGGGCGGAGGAACAGGATTCTTCCTCCGCTATCTTGGTAGAGACGAGCCTTCTCGAACGCCTATATAACAAGTGCTAATTTAACTGAGACTCCTATAGGCCGAGTGCTGAATAAATCGATGGATGAATAAATGAGTCGGCGGCCCTAAATCTTTTGTTCCCTCTCAGGCTGGGATTTTAGTGCTTGCTCAAGTAGCAATTCATCATACTGTAGTTTGAATGGCAGCGTCGCAGCACTGTTGTGAAGTGTCGTTCTGGCTATATCTTCTGATAATTTTCGCGCTGGTGCTTTTCGCTGGCTTGATGTCTGGACTTACCCTCGGCCTAATGTCGCTGGGACTCGTCGACTTGGAAGTTCTGATTAAGTCTGGCAAGCCTGAAGATAAAAAACACGCTGAAAAGATCTTACCTGTGGTGAAGAATCAACATTTGTTACTTTGCACCCTATTAATTGGAAACTCGTTAGCCATGGAGGCTCTTCCAATTTTTCTTGATTCACTAGTGCCTGCTTGGGGGGCTGTTTTGATATCTGTTACTTTGATTCTGATGTTTGGAGAGATCTTTCCTCAAGCAGTTTGTTCTCGCTATGGCCTGGCAGTTGGAGCAGCAATGGCACCAATTGTTCATGTGCTGTTATTGGTATTTTTTCCAGTTGCATATCCCATCAGTAAGCTCTTGGATTCACTGCTTGGGAAAGGACATATGGTTCTTTTACGTAGAGCAGAGTTAAAGACACTTGTGGATATGCATGGAAATGAGGCTGGGAAAGGAGGAGAGTTAACACATGATGAGACTACCATAATAGGAGGGGCTTTGGAAATGACTCAAAAAACGGCCAGAGATGCTATGACACCAATCTCCAGTACCTTCTCTGTTGATGTGAATGCAAAACTTGACATGCACACTATGAATTTAATAATGATGAAGGGGCACAGCCGAGTTCCTGTTTATTCTGGAAATCCGACAAACATTATTGGCCTTATTTTGGTGAAAAGCTTGCTTACAATTCGTCCAGAAGATGATACACACGTAAGGAATGTGACTATTCGCAAAATTCCCAGGGTTCCAGAGCACATGCCTCTCTATGATATTTTAAATGAATTTCAGAAAGGGCAGAGCCACATGGCTGTTGTTGTCAAGTATAGCAAGGAAAAAATTGAGGCCCTAAACAAATTGAAGAGTCCATTGGATAGGAGACCACCTAATACCAGACGCAAAAGACAATCTCATCCTAAGGCTGTGACAGGTCCCGGTGATTCAAACTCTGTTAGCCTGGATGTATCTGATGGAGTTAGACGGGAATCATTGACAGCCAATTCTGTCCACAATAATAATAATGGATCTTACACGAAAGGATTGAGGAAGGATGGGGATGGACATGGAGGGGAGCCAAGCTCTATTGCTCGTTCCAAGAAGCGGGAACGGAATGGGTTTGGTGATATTCTTGATATTGGCACAGGTTCTCTTCCAAGCTTCCCAGAGGATGAGGAGGTTATTGGTATTATAACAATGGAAGATGTAATTGAGGAACTTCTACAGGAGGAAATATTGGATGAAACTGATGAGTACATTGATGTCCATAACAAGATAAAGGTTAATATGCTGGCAATGGGAAGAAGGTCCCCTTTGACTTTATCGTCACCCACATCAGCATTCTCTACTGCAGAAGCTTCTCCTTTATCTTCAGTTCAGCCTACACCTCCATTGACATCACCTTTATTACGTTCACCCATTTCACCTCATCCCCAATTACCTGGGCCAAAGCCGACATTATCAGTCTCTCCGAGCTCTTCACTGTCAGGTTCACCAATATTTCTGCATGGTTCTAGATTACAAGTTCTGCAACATGAAGGTGGCTCAAACTATGGGCCACGTGTTCCATACGAGAAGCTCAAGAAATGAAACGATACAGATCATTAACAAAGGGCATTGAGTTGGTACATGTTGAGCTTAGTCTGCACACTCTGAACACTGCTCAGCTCCCTGTTTTAATCAAAACTATATTAAAAAGACCATGAAATGTCTTTGGAAACATTCAGTACTTTACTCATTATGCACAACGTTATTCTCTAGAAGTTATTGTACAGATAAATGGACAGTTACCAAAAATTCAAAGAGTTCTGTTTTTTAATCTTTAGTGAGGCGAAAGAGAAGAAGATCCGTATTTCCTCAGGTCCTGCTATGCTTAAATAATTTTGTTCAATTATTGTCCACAAGTGAACTACAGGTTCAGTTTCCGATTATTATTGGTTAGAAATTGTAATTCATATATAATCAGCTTCCAATCTCTGATGTATGAAGAAATGTTTGTCTATCTTCAAAGAGAAAAGGAAAAATGAAATAAAATTTCTTTGGGTTAAAATAAGCAAGAGAAATTCTATCTTCCCTTAC

Ace file of the UniGene sp_v3.0_unigene15080

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF21 domain containing protein	-	-	1.0e-35	31%
FL-Next	sp=DUF21 domain-containing protein At1g47330; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%

Source	Gene names
Sma3	AT4G33700; AT4g14230; AT4g14240; AT4g33700; At1g47330; At2g14520; At4g14230; At4g33700; CHLREDRAFT_108792; CHLREDRAFT_143478; CHLREDRAFT_148687; F15K9.13; GSVIVT00012456001; GSVIVT00014615001; GSVIVT00019895001; GSVIVT00023690001; GSVIVT00037745001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Flavodoxin	IPR001094	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Domain of unknown function DUF21	IPR002550	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	tRNA wybutosine-synthesis	IPR013917	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G47330.1	CBS domain-containing protein with a domain of unknown function (DUF21) chr1:17351149-17353739 FORWARD LENGTH=527	57%
RefSeq	Arabidopsis thaliana	NP_175166.2	uncharacterized protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002320632.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8RY60

Fln msg: your sequence is longer than subject: 561 - 527

Fln protein: MAASQHCCEVSFWLYLLIIFALVLFAGLMSGLTLGLMSLGLVDLEVLIKSGKPEDKKHAEKILPVVKNQHLLLCTLLIGNSLAMEALPIFLDSLVPAWGAVLISVTLILMFGEIFPQAVCSRYGLAVGAAMAPIVHVLLLVFFPVAYPISKLLDSLLGKGHMVLLRRAELKTLVDMHGNEAGKGGELTHDETTIIGGALEMTQKTARDAMTPISSTFSVDVNAKLDMHTMNLIMMKGHSRVPVYSGNPTNIIGLILVKSLLTIRPEDDTHVRNVTIRKIPRVPEHMPLYDILNEFQKGQSHMAVVVKYSKEKIEALNKLKSPLDRRPPNTRRKRQSHPKAVTGPGDSNSVSLDVSDGVRRESLTANSVHNNNNGSYTKGLRKDGDGHGGEPSSIARSKKRERNGFGDILDIGTGSLPSFPEDEEVIGIITMEDVIEELLQEEILDETDEYIDVHNKIKVNMLAMGRRSPLTLSSPTSAFSTAEASPLSSVQPTPPLTSPLLRSPISPHPQLPGPKPTLSVSPSSSLSGSPIFLHGSRLQVLQHEGGSNYGPRVPYEKLKK*

Protein Length: 562

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTTCTGGGCAGGGCCAAAGTGAGGGCTTGGAATTTACATTTTAGCTGGCCGTCTGAGTTGGCTGCGCTGAGTGAGGTTATTTGGCTTGGATGGATGGTTGAGCTGGCAGGGCCTCTGCAATTGGGGCGCTTTAAATGCGCATTTAAGAATAGTTTCCGACAGTGATAGGGGCGGAGGAACAGGATTCTTCCTCCGCTATCTTGGTAGAGACGAGCCTTCTCGAACGCCTATATAACAAGTGCTAATTTAACTGAGACTCCTATAGGCCGAGTGCTGAATAAATCGATGGATGAATAAATGAGTCGGCGGCCCTAAATCTTTTGTTCCCTCTCAGGCTGGGATTTTAGTGCTTGCTCAAGTAGCAATTCATCATACTGTAGTTTGA_-_ATGGCAGCGTCGCAGCACTGTTGTGAAGTGTCGTTCTGGCTATATCTTCTGATAATTTTCGCGCTGGTGCTTTTCGCTGGCTTGATGTCTGGACTTACCCTCGGCCTAATGTCGCTGGGACTCGTCGACTTGGAAGTTCTGATTAAGTCTGGCAAGCCTGAAGATAAAAAACACGCTGAAAAGATCTTACCTGTGGTGAAGAATCAACATTTGTTACTTTGCACCCTATTAATTGGAAACTCGTTAGCCATGGAGGCTCTTCCAATTTTTCTTGATTCACTAGTGCCTGCTTGGGGGGCTGTTTTGATATCTGTTACTTTGATTCTGATGTTTGGAGAGATCTTTCCTCAAGCAGTTTGTTCTCGCTATGGCCTGGCAGTTGGAGCAGCAATGGCACCAATTGTTCATGTGCTGTTATTGGTATTTTTTCCAGTTGCATATCCCATCAGTAAGCTCTTGGATTCACTGCTTGGGAAAGGACATATGGTTCTTTTACGTAGAGCAGAGTTAAAGACACTTGTGGATATGCATGGAAATGAGGCTGGGAAAGGAGGAGAGTTAACACATGATGAGACTACCATAATAGGAGGGGCTTTGGAAATGACTCAAAAAACGGCCAGAGATGCTATGACACCAATCTCCAGTACCTTCTCTGTTGATGTGAATGCAAAACTTGACATGCACACTATGAATTTAATAATGATGAAGGGGCACAGCCGAGTTCCTGTTTATTCTGGAAATCCGACAAACATTATTGGCCTTATTTTGGTGAAAAGCTTGCTTACAATTCGTCCAGAAGATGATACACACGTAAGGAATGTGACTATTCGCAAAATTCCCAGGGTTCCAGAGCACATGCCTCTCTATGATATTTTAAATGAATTTCAGAAAGGGCAGAGCCACATGGCTGTTGTTGTCAAGTATAGCAAGGAAAAAATTGAGGCCCTAAACAAATTGAAGAGTCCATTGGATAGGAGACCACCTAATACCAGACGCAAAAGACAATCTCATCCTAAGGCTGTGACAGGTCCCGGTGATTCAAACTCTGTTAGCCTGGATGTATCTGATGGAGTTAGACGGGAATCATTGACAGCCAATTCTGTCCACAATAATAATAATGGATCTTACACGAAAGGATTGAGGAAGGATGGGGATGGACATGGAGGGGAGCCAAGCTCTATTGCTCGTTCCAAGAAGCGGGAACGGAATGGGTTTGGTGATATTCTTGATATTGGCACAGGTTCTCTTCCAAGCTTCCCAGAGGATGAGGAGGTTATTGGTATTATAACAATGGAAGATGTAATTGAGGAACTTCTACAGGAGGAAATATTGGATGAAACTGATGAGTACATTGATGTCCATAACAAGATAAAGGTTAATATGCTGGCAATGGGAAGAAGGTCCCCTTTGACTTTATCGTCACCCACATCAGCATTCTCTACTGCAGAAGCTTCTCCTTTATCTTCAGTTCAGCCTACACCTCCATTGACATCACCTTTATTACGTTCACCCATTTCACCTCATCCCCAATTACCTGGGCCAAAGCCGACATTATCAGTCTCTCCGAGCTCTTCACTGTCAGGTTCACCAATATTTCTGCATGGTTCTAGATTACAAGTTCTGCAACATGAAGGTGGCTCAAACTATGGGCCACGTGTTCCATACGAGAAGCTCAAGAAATGA___AACGATACAGATCATTAACAAAGGGCATTGAGTTGGTACATGTTGAGCTTAGTCTGCACACTCTGAACACTGCTCAGCTCCCTGTTTTAATCAAAACTATATTAAAAAGACCATGAAATGTCTTTGGAAACATTCAGTACTTTACTCATTATGCACAACGTTATTCTCTAGAAGTTATTGTACAGATAAATGGACAGTTACCAAAAATTCAAAGAGTTCTGTTTTTTAATCTTTAGTGAGGCGAAAGAGAAGAAGATCCGTATTTCCTCAGGTCCTGCTATGCTTAAATAATTTTGTTCAATTATTGTCCACAAGTGAACTACAGGTTCAGTTTCCGATTATTATTGGTTAGAAATTGTAATTCATATATAATCAGCTTCCAATCTCTGATGTATGAAGAAATGTTTGTCTATCTTCAAAGAGAAAAGGAAAAATGAAATAAAATTTCTTTGGGTTAAAATAAGCAAGAGAAATTCTATCTTCCCTTAC

Fln Alignment:

Contig15080___MAASQHCCEVSFWLYLLIIFALVLFAXXXXXXXXXXXXXXXVDLEVLIKSGKPEDKKHAEKILPVVKNQHLLLCTLLIGNSLAMEALPIFLDSLVPAWGAVLISVTLILMFGEIFPQAVCSRYGLAVGAAMAPIVHVLLLVFFPVAYPISKLLDSLLGKGHMVLLRRAELKTLVDMHGNEAGKGGELTHDETTIIGGALEMTQKTARDAMTPISSTFSVDVNAKLDMHTMNLIMMKGHSRVPVYSGNPTNIIGLILVKSLLTIRPEDDTHVRNVTIRKIPRVPEHMPLYDILNEFQKGQSHMAVVVKYSKEKIEALNKLKSPLDRRPPNTRRKRQSHPKAVTGPGDSNSVSLDVSDGVRRESLTANSVHNNNNGSYTKGLRKDGD---GHGGEPSSIARSKKRERNGFGDILDIGTGSLPSFPEDEEVIGIITMXXXXXXXXXXXXXXXXXXYIDVHNKIKVNMLAMGRRSPLTLSSPTSAFS
Q8RY60_______________MSSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGKIFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCTRYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEAGKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRVPVYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSHIAVVYKDLDEQEQSPETSENGIERR-KNKKTKDELFKDSCRKP----KAQFEVSE---------KEVFKIETGDAKSGKSENGEEQQGSGKTSLLAAPAKKRHRGCSFCILDIENTPIPDFPTNEEVVGVITMEDVIEELLQEEILDETDEYVNIHNRIRVNMHASPENLPSVITSITQSSS

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1110	12			87	0.992554
1111		12		87	0.992554
1113	87			12	0.992554
1181	60			40	1.0
1223	75		25		0.996473
1495	22		77		0.999999
1502	90		10		0.90298
1503			10	90	0.90298
1504			10	90	0.90298
1510		90		10	0.90298
1721	14			85	0.993533
1722		14	85		0.993533
1724			85	14	0.993533
1725			85	14	0.993533
1769			11	88	0.923564
1783	90			10	0.90298
1784			90	10	0.90298
1895	90			10	0.90298
1897		90	10		0.90298
1899	10	90			0.90298
1901	90	10			0.90298
1905	90		10		0.90298
1907	90		10		0.90298
1913	10			90	0.90298
2168	56		43		1.0
2170	43			56	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1520	1531	AAT AAT AAT AAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain