SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene15066

Length: 1854 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene15066

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 2 n=6 Tax=BEP clade RepID=RH2_ORYSJ	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G19760.1	EIF4A-III eukaryotic initiation factor 4A-III chr3:6863790-6866242 FORWARD LENGTH=408	86%
RefSeq	Arabidopsis thaliana	NP_188610.1	DEAD-box ATP-dependent RNA helicase 2 [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002310663.1	predicted protein [Populus trichocarpa]	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUU4

Fln msg:

Fln protein: MAAIAVGGRNRNNGRNADGDENLVFETSPGVEVIASFDQMGIRDDLLRGIYQYGFEKPSAIQQRAVMPIINGRDVIAQAQSGTGKTSMIALAVCQIIDTSIREVQALIVSPTRELAAQTEKVILAIGDFINVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAVKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRDIEQYYSTQIDEMPMNVADLI*

Protein Length: 410

Fln nts: GACACTTTGGAAAATGGATGTGGCTGGAACGATCAGCTAGACCATAGCTGATCGCTGATTTGGTCCTCGTATGCACTTAAAAGCTGGCCTAGAAGGGCATTTGACAAACGTTTAATTATGGTTATTGAAGCTTCACGATTGCAACCGCAGGAAAAGGGAAACAAAGAGTTCTTAGGTACACCTATCGATCTCTGGCGAGCTGTCTTGTGTTGAGGGTAGATTTGCGGGCGCTGGAAAGAAAGGGCAGGGAAGGATTCTTCCTGTCTGCGTCTATACCAAAA_-_ATGGCTGCCATTGCGGTCGGCGGTAGGAACCGCAACAATGGACGGAACGCGGATGGTGATGAAAACCTAGTATTTGAAACAAGTCCGGGAGTAGAAGTAATCGCGAGCTTTGATCAGATGGGTATCCGTGACGACCTTCTTCGAGGTATATACCAATATGGCTTCGAGAAACCCTCAGCTATTCAGCAGAGAGCGGTCATGCCCATCATCAACGGCAGAGATGTTATTGCGCAGGCACAGTCTGGGACGGGAAAGACCTCCATGATTGCCCTCGCTGTCTGCCAGATAATTGATACCTCCATCCGAGAGGTTCAAGCTTTAATTGTATCACCTACAAGAGAACTTGCAGCTCAAACAGAGAAAGTGATTCTTGCCATAGGAGATTTCATAAATGTTCAAGCCCATGCATGTATTGGTGGCAAGAGTATTGGAGAGGACATCAGAAAATTGGAATATGGTGTTCATGTGGTATCAGGAACACCAGGAAGAGTATGTGATATGATCAAGCGCAGGACTTTAAGGACTAGAGCTGTAAAACTACTTGTTCTTGATGAATCTGATGAGATGTTGAGCAGGGGATTCAAAGACCAGATATATGATGTTTATCGATACCTTCCACCAGAGCTTCAGGTTGTGCTGATATCAGCAACTTTGCCACATGAGATTTTGGAGATTACAAACAAATTCATGACTGATCCTGTAAGAATCCTTGTCAAACGTGATGAATTGACACTGGAGGGCATCAAACAATTTTTTGTGGCTGTTGAAAGAGAGGAGTGGAAGTTTGACACCCTATGTGATCTATATGATACACTTACTATTACTCAGGCTGTCATATTTTGCAATACCAAAAGAAAGGTTGATTGGTTGACAGAAAAGATGCGAAGCAATAATTTCACTGTGTCTTCTATGCATGGAGACATGCCACAAAAAGAACGTGATGCAATTATGGCAGAATTTCGTGCAGGCACAACCCGTGTTTTAATCACAACAGATGTTTGGGCTCGTGGTCTTGATGTTCAGCAGGTTTCCTTGGTGATAAACTATGATCTTCCCAACAATCGTGAACTTTACATTCATAGAATTGGTCGCTCAGGTCGTTTCGGTCGAAAGGGTGTTGCAATAAATTTTGTTCGAAATGATGATATTAGGATACTAAGAGATATTGAGCAGTATTACAGTACTCAGATAGATGAAATGCCCATGAATGTGGCAGATCTGATCTAA___ATAATGCAATTATTCCAGCATGTAATATTAGCTACAACAAGTGTCCTGATGCCTGCTTAATTAGGACATGTTAAACATCCCCTGTATTTTCAGTAGCTGTGCTACATTTGCTTCAAAGAATGTTTTGTAGTGGCAAGCAGAGTGTCTCTCGGTGTTGTGCCTGCCAGATGTTGTATACTTCAAATTTCATGTCCAACGTGCTTATAGATTTTATAGTCTGTCCTGTAAGCTTCTGAGTGGAGCAGTTTAATGTTGACAGCACGAAAATGAATTTGCTTGTATTCTTTTATAATATTGACAGTCTGCAAAGTTTGACATCATCGTTAATCAGTTTAAAGGTTTGTGC

Fln Alignment:

Contig15066___MAAIAVXXXXXXXXXXADGDENLVFETSPGVEVIASFDQMGIRDDLLRGIYQYGFEKPSAIQQRAVMPIINGRDVIAQAQSGTGKTSMIALAVCQIIDTSIREVQALIVSPTRELAAQTEKVILAIGDFINVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAVKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRDIEQYYSTQIDEMPMNVADLI
A9NUU4_______________MAAMAGGGRNRNNGRNPDGDENLIFETSPGVEVISSFDQMGIRDDLLRGIYQYGFEKPSAIQQRAVMPIINGRDVIAQAQSGTGKTSMIALAVCQIIDTSIREVQALIVSPTRELAAQTEKVILAIGDFINVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAVKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRDIEQYYSTQIDEMPMNVADLI

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
12	66			33	0.997452
13	66		33		0.997452
14	75		25		0.996473
15			25	75	0.996473
16			50	50	1.0
18	75		25		0.996473
19			25	75	0.996473
60	20			80	0.995493
61	20			80	0.995493
62			80	20	0.995493
180	50		50		1.0
291	80		20		0.995493
591	12		87		0.992554
685	85		14		0.993533
772		16		83	0.994512
1122	11			88	0.923564
1125	87			12	0.992554
1126	87	12			0.992554
1154	75		25		0.996473
1341	66	33			0.997452
1342	66		33		0.997452
1349	66	33			0.997452
1353			33	66	0.997452
1354	66		33		0.997452
1356	66			33	0.997452
1357			33	66	0.997452
1362	66	33			0.997452
1363			66	33	0.997452
1364	66	33			0.997452
1754	10			90	0.90298
1755	10			90	0.90298
1757	90		10		0.90298
1758	90			10	0.90298
1827	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain