SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14976

Length: 450 nt

UniGene Fasta

>sp_v3.0_unigene14976
ATGGGTGTTCATGTTCACCTGTAATATCAATTTAATGCACATGAGAACAGTTCTGAAGGCCTTTGCATTATAGACATTCCACCTGTACAATCAATTTCATGCACAGGAGAACAGTTCTGATGGTCTTTACATTATAGACATTACCAGTAACGAATTTTGAGAATTGTGTTGCGAGTATAGGCTTCGCAACACTCGGAACAACACAAAGCAGTGGAAATGAAGAAGGAAAATAACAGAGGGCGGATAATTGCTGGATATTCTATCGAAGGTCTGTCAATCGGAGGGCACGAGACTTGCGTCATTGTGCCCACCCTAAAGATGGCCTTTGACATTGGACGCTGCCCTCCGAGGGCCATCGCACAGGATTTCCTCTTCATCTCCCACGGTCACATGGATCACATTGGTGGACTTCCAATGTATGTTGCAACTCGGGGTCTATACAACATGAGG

Ace file of the UniGene sp_v3.0_unigene14976

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nuclear ribonuclease Z [Arabidopsis thaliana] sp\|Q8LGU7.3\|RNZN_ARATH RecName: Full=Nuclear ribonuclease Z; Short=RNase Z; AltName: Full=Zinc phosphodiesterase NUZ; AltName: Full=tRNA 3 endonuclease; AltName: Full=tRNase Z emb\|CAD22100.1\| RNase Z [Arabidop	-	-	6.0e-28	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Nuclear ribonuclease Z	-	-	8.108e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ribonuclease Z.	EC:3.1.26.11	-	4.228e-22	-

Source	Gene names
Sma3	At1g74700; At2g04530; CPZ; ELAC; F1M20.38; F25A4.32; GSVIVT00000101001; GSVIVT00025981001; MICPUCDRAFT_5692; MICPUN_79930; NUZ; OJ1006_D05.15; OSTLU_26345; Os02g0214300; OsI_06362; OsI_31806; OsJ_05878; OsJ_29793; Ot11g00150; PHYPADRAFT_155555; PHYPADRAFT

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	3'-tRNA processing endoribonuclease activity	GO:0042781	Molecular Function	-
Sma3	tRNA processing	GO:0008033	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Beta-lactamase-like	IPR001279	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G74700.1	NUZ, TRZ1 tRNAse Z1 chr1:28065345-28067130 FORWARD LENGTH=280	3.0e-35	76%
RefSeq	Arabidopsis thaliana	NP_177608.2	nuclear ribonuclease Z [Arabidopsis thaliana]	4.0e-35	76%
RefSeq	Populus trichocarpa	XP_002330087.1	predicted protein, partial [Populus trichocarpa]	6.0e-34	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSJ9

Fln msg: Distance to subject end: 204 aas, your sequence is shorter than subject: 78 - 291

Fln protein: MKKENNRGRIIAGYSIEGLSIGGHETCVIVPTLKMAFDIGRCPPRAIAQDFLFISHGHMDHIGGLPMYVATRGLYNMR

Protein Length: 79

Fln nts: ATGGGTGTTCATGTTCACCTGTAATATCAATTTAATGCACATGAGAACAGTTCTGAAGGCCTTTGCATTATAGACATTCCACCTGTACAATCAATTTCATGCACAGGAGAACAGTTCTGATGGTCTTTACATTATAGACATTACCAGTAACGAATTTTGAGAATTGTGTTGCGAGTATAGGCTTCGCAACACTCGGAACAACACAAAGCAGTGGAA_-_ATGAAGAAGGAAAATAACAGAGGGCGGATAATTGCTGGATATTCTATCGAAGGTCTGTCAATCGGAGGGCACGAGACTTGCGTCATTGTGCCCACCCTAAAGATGGCCTTTGACATTGGACGCTGCCCTCCGAGGGCCATCGCACAGGATTTCCTCTTCATCTCCCACGGTCACATGGATCACATTGGTGGACTTCCAATGTATGTTGCAACTCGGGGTCTATACAACATGAGG

Fln Alignment:

Contig14976___EQHKAV-EMKKENNRGRIIAGYSIEGLSIGGHETCVIVPTLKMAFDIGRCPPRAIAQDFLFISHGHMDHIGGLPMYVATRGLYNMR
A9NSJ9_______________EQQKAVVEVEKVKIRGRQIAGYSIEGLSIGGQETCVIVPTLNMAFDIGRCPPRAIAQDFLFISHGHMDHIGGLPMYVATRGLYNMR

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
159	20		80		0.995493
163	80			20	0.995493
195		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain