SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14971

Length: 2809 nt

UniGene Fasta

>sp_v3.0_unigene14971
ATGGGGATTTTATTCTTAACAAACCAGTTCACAGGGCACAGACGAGGTGGAGTTGGTACGATCGTTGCTCAAAGTGGACACCTAAGGAGGACGGTCGCATGCGGTTTGTGCAGTAAATAGCATTAAACTGTTGGGTTTTGTCCGAAATGAGGTTGAACACAACTTCTTGTCTGCAAAGTCGGTTGTTGGGGGAGCCACCAAAAGGGTCGTTGAATCCAACCGAGAAATCATTCGCCCCAAGGCTTGGTCTTGTCAGAGAATCTCATCATGCTTCGGGCTATGTTTCTTCATTTGCAACCATAGGATCCATCAATCACGATGTTCACAATTCTAGATACTTGTTCTATCCAGCAAGCATCAGAGGTTTTGCAGGCCTACCATGGCAGATTCAGAGCCTCCACACGACACAGAGAAAGAAAACATTAGTTCAAGGCTCTAAGTCTCGTCATTCCAGAGATTCCGAGCATGGGAGAAAACAGGTTGCTTCAGCCTCATTATCATCATTTGCGGAGGCTGGTGGAGAAGATAATGAGAACAAAGCATACCCAGTTGATAGCAGCGATGCCAGACCTGACAAGGGTGACTCACAAAATGAAAATACGCAAGGAATGGCTCAAGCCTTAAACATCTCTCCTCGAACAGCATTTGGTATCGCAGTAGGCATTGCATCTGCAGCTGTAGTTCTTCCACTGTTGATGAAATCGTCGGGACATGGACTGCCACTCAAAAATAAAGGGTCTTTCTTATATAACACTGCTCTGTGGATTCTACATGGCATGGAATATAGGTGCCAATGATGTTGCCAATGCCATGGGAACTTCAGTTGGATCAGGTGCATTAACATTGAGACAAGCAGTATTGACTGCAAGTATCTTGGAATTTTCAGGAGCCTTTTTGATGGGTTCACATGTTAGCGACACTATGCAGAAGGGAATTCTGGTTGCAAATTTCTTCAATGGAAAGGATTCTCTATTTCTTGCAGGAATGCTATCATCATTATTAGCTGCTGGCACATGGTTGCAGTTTGCGTCATCTTACGGATTGCCAGTGTCCACCACTCATTGTATAGTCGGAGCAATGTTGGGCTTTGGGCTGGTGTATGGAGGAGTTGCAGCTGTCTTTTGGAGTTCATTAGGCAGAGTCGTTTTGTCGTGGATTATATCTCCGGCTATAGGCGCAGCAGTTGCTTCTATTGTTTACAAGTGTATTCGTACGTTTGTGTACAGTGCACCAAATCCTGGCGAAGCTGCAGCCGCAGCTGCACCTATTGCTGTGTTTTTCGGAGTCACAGTTATTTCATACCTGGCATTTCCTTTGAGCACGATTCCGTTAATTGCAACAGCACAAGCTCTTGGTTGTGGCATCCTGGGAACCATTCTTATAACCAGTGTTATTAATCGACAGCTTGGCAATCTTCTTGCATTGTCAAAAGAGGCACATTTGAATGAGCAACAAACTCCTAGACGGATCGACTTATTATCAGAAATAGCTGGCCCTAAAGGAGATCAGCTGAAAATAGTTTATAGTGTCTTTGGATATATGCAAGTGCTGTCAGCTTGTTTTATGTCATTTGCACATGGAGCAAATGATGTGGCAAATGCTATTGGTCCCTTAGGCGCTGCCTTATCTATCCTTAAAGGAACACATTTAAGTGGAAATATGGTTGTGCCCATTGATGTTCTTGCATGGGGTGGATTTGGAATTGTTGCAGGGTTGATGGTATGGGGCTACAAAGTGATTGCAACAATAGGCAGGAAAATTACAGAGTTGACTCCAACGAGAGGTTTTGCAGCTGAGTTTGCCGCTGCTATTGTTGTGGTCGTTGCATCAAAGCTTGGGCTTCCCATTTCTGCTACACATACTTTAGTAGGCGCAGTGATGGGAGTTGGATTTGCGAGAGGTCTCAAAAATGTTCGAGTTGAAACAGTACGGGAGATAGTTGTCTCTTGGTTTGTGACGATTCCAATTGGTGCTGCGTTGTCCGTGATGTATACATGGATTCTAATGAAGTTGCTTCCGTCACTGGGATAATCTAGTGCTCTTCAAGAGAATGTAAGAATATAACAATGGCGTCTTGGAGAGAAAATTGTCAATGGTAGTCAAAATAGGCAATAACAGATATTCCTGTGACTCCCACTGGAATTTGTGGTCATTTAAATTGGTATGCTAAGACGAGGCATCAAGTTTGTGATCCTGAAAGAGTTTCTCTTGATGGACAGTAATCGGAAGAAAGGAAGTTCGTACTGTTTATAGTTTCGGACATCTCATGTAAATGTAACATTGTTTCTAAGATACTTACATGGCATCAAGCGATCCAGTTATTGGGATTCTTCTGAGATCCAAGATACCCAAGGTGCTAATGGTACACAACCTTTTGGAGTTTCAGAAAGATTGAAATAAAGTATGCAAGGGTATAATTTGCATTTGATTAACAGGGCAGCTATTCTCTTGTGTTCCAACTTCTTATTTGATGTTGAAACCTGGAGACGGCTTTTCATGACGATTTAAGGGACTGCAGTATCATCTGCAAGCTTGTCAATTGTTTCTATGTACTAGAGTTCATCTCCATATGTAAAGAACAGAGACAGTGATACAGTATTAGACATGATATTTAGATCTGCCGAAATAGCTTATAAAAGGGACAAATTTATTCGTTACTTTAAATACGTTTGTCCTTATAGTTTATTGAACAAGGTACATTTGATCAATTTCTTTGAAGTGAAAGGAGGAAGGGAAGCCTGTAAAGATTTTCCATTTCACTTAAAAATTGAGTTCAACTGGCTTGTGAACTGGCAGTCTTTTCTTTCCA

Ace file of the UniGene sp_v3.0_unigene14971

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphate hydrogen transporter (Fragment) n=1 Tax=Spinacia oleracea RepID=Q8L6C7_SPIOL	-	-	0.0	65%
FL-Next	sp=Inorganic phosphate transporter 2-1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	72%
Sma3	Chloroplast phosphate transporter	-	-	1.901e-17	-

Source	Gene names
Sma3	At3g26570; CHLREDRAFT_181195; GSVIVT00009459001; MFE16.10; OJ1067_B01.4-1; OJ1067_B01.4-2; OSJNBa0016G10.26-1; OSJNBa0016G10.26-2; Os02g0593500; OsI_07884; OsJ_07345; PHT2; PHT2-1; PHYPADRAFT_144831; POPTRDRAFT_230519; POPTRDRAFT_421027; PT2-1; Pht2; PtrP

Source	GOs	Term	Type	Identity
Sma3	plastid inner membrane	GO:0009528	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	inorganic phosphate transmembrane transporter activity	GO:0005315	Molecular Function	-
Sma3	low affinity phosphate transmembrane transporter activity	GO:0009673	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	phosphate ion transport	GO:0006817	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphate transporter	IPR001204	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G26570.1	" PHT2;1, ORF02 phosphate transporter 2;1 chr3:9756261-9758413 FORWARD LENGTH=613"	72%
RefSeq	Arabidopsis thaliana	NP_850633.1	inorganic phosphate transporter 2-1 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002314598.1	hypothetical protein POPTRDRAFT_230519, partial [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q38954

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 440 - 587

Fln protein: MDCHSKIKGLSYITLLCGFYMAWNIGANDVANAMGTSVGSGALTLRQAVLTASILEFSGAFLMGSHVSDTMQKGILVANFFNGKDSLFLAGMLSSLLAAGTWLQFASSYGLPVSTTHCIVGAMLGFGLVYGGVAAVFWSSLGRVVLSWIISPAIGAAVASIVYKCIRTFVYSAPNPGEAAAAAAPIAVFFGVTVISYLAFPLSTIPLIATAQALGCGILGTILITSVINRQLGNLLALSKEAHLNEQQTPRRIDLLSEIAGPKGDQLKIVYSVFGYMQVLSACFMSFAHGANDVANAIGPLGAALSILKGTHLSGNMVVPIDVLAWGGFGIVAGLMVWGYKVIATIGRKITELTPTRGFAAEFAAAIVVVVASKLGLPISATHTLVGAVMGVGFARGLKNVRVETVREIVVSWFVTIPIGAALSVMYTWILMKLLPSLG*

Protein Length: 441

Fln nts: ATGGGGATTTTATTCTTAACAAACCAGTTCACAGGGCACAGACGAGGTGGAGTTGGTACGATCGTTGCTCAAAGTGGACACCTAAGGAGGACGGTCGCATGCGGTTTGTGCAGTAAATAGCATTAAACTGTTGGGTTTTGTCCGAAATGAGGTTGAACACAACTTCTTGTCTGCAAAGTCGGTTGTTGGGGGAGCCACCAAAAGGGTCGTTGAATCCAACCGAGAAATCATTCGCCCCAAGGCTTGGTCTTGTCAGAGAATCTCATCATGCTTCGGGCTATGTTTCTTCATTTGCAACCATAGGATCCATCAATCACGATGTTCACAATTCTAGATACTTGTTCTATCCAGCAAGCATCAGAGGTTTTGCAGGCCTACCATGGCAGATTCAGAGCCTCCACACGACACAGAGAAAGAAAACATTAGTTCAAGGCTCTAAGTCTCGTCATTCCAGAGATTCCGAGCATGGGAGAAAACAGGTTGCTTCAGCCTCATTATCATCATTTGCGGAGGCTGGTGGAGAAGATAATGAGAACAAAGCATACCCAGTTGATAGCAGCGATGCCAGACCTGACAAGGGTGACTCACAAAATGAAAATACGCAAGGAATGGCTCAAGCCTTAAACATCTCTCCTCGAACAGCATTTGGTATCGCAGTAGGCATTGCATCTGCAGCTGTAGTTCTTCCACTGTTGATGAAATCGTCGGGAC_-_ATGGACTGCCACTCAAAAATAAAGGGTCTTTCTTATATAACACTGCTCTGTGGATTCTACATGGCATGGAATATAGGTGCCAATGATGTTGCCAATGCCATGGGAACTTCAGTTGGATCAGGTGCATTAACATTGAGACAAGCAGTATTGACTGCAAGTATCTTGGAATTTTCAGGAGCCTTTTTGATGGGTTCACATGTTAGCGACACTATGCAGAAGGGAATTCTGGTTGCAAATTTCTTCAATGGAAAGGATTCTCTATTTCTTGCAGGAATGCTATCATCATTATTAGCTGCTGGCACATGGTTGCAGTTTGCGTCATCTTACGGATTGCCAGTGTCCACCACTCATTGTATAGTCGGAGCAATGTTGGGCTTTGGGCTGGTGTATGGAGGAGTTGCAGCTGTCTTTTGGAGTTCATTAGGCAGAGTCGTTTTGTCGTGGATTATATCTCCGGCTATAGGCGCAGCAGTTGCTTCTATTGTTTACAAGTGTATTCGTACGTTTGTGTACAGTGCACCAAATCCTGGCGAAGCTGCAGCCGCAGCTGCACCTATTGCTGTGTTTTTCGGAGTCACAGTTATTTCATACCTGGCATTTCCTTTGAGCACGATTCCGTTAATTGCAACAGCACAAGCTCTTGGTTGTGGCATCCTGGGAACCATTCTTATAACCAGTGTTATTAATCGACAGCTTGGCAATCTTCTTGCATTGTCAAAAGAGGCACATTTGAATGAGCAACAAACTCCTAGACGGATCGACTTATTATCAGAAATAGCTGGCCCTAAAGGAGATCAGCTGAAAATAGTTTATAGTGTCTTTGGATATATGCAAGTGCTGTCAGCTTGTTTTATGTCATTTGCACATGGAGCAAATGATGTGGCAAATGCTATTGGTCCCTTAGGCGCTGCCTTATCTATCCTTAAAGGAACACATTTAAGTGGAAATATGGTTGTGCCCATTGATGTTCTTGCATGGGGTGGATTTGGAATTGTTGCAGGGTTGATGGTATGGGGCTACAAAGTGATTGCAACAATAGGCAGGAAAATTACAGAGTTGACTCCAACGAGAGGTTTTGCAGCTGAGTTTGCCGCTGCTATTGTTGTGGTCGTTGCATCAAAGCTTGGGCTTCCCATTTCTGCTACACATACTTTAGTAGGCGCAGTGATGGGAGTTGGATTTGCGAGAGGTCTCAAAAATGTTCGAGTTGAAACAGTACGGGAGATAGTTGTCTCTTGGTTTGTGACGATTCCAATTGGTGCTGCGTTGTCCGTGATGTATACATGGATTCTAATGAAGTTGCTTCCGTCACTGGGATAATCTAGTGCTCTTCAAGAGAATGTAAGAATATAACAATGGCGTCTTGGAGAGAAAATTGTCAATGGTAGTCAAAATAGGCAATAACAGATATTCCTGTGACTCCCACTGGAATTTGTGGTCATTTAAATTGGTATGCTAAGACGAGGCATCAAGTTTGTGATCCTGAAAGAGTTTCTCTTGATGGACAGTAATCGGAAGAAAGGAAGTTCGTACTGTTTATAGTTTCGGACATCTCATGTAAATGTAACATTGTTTCTAAGATACTTACATGGCATCAAGCGATCCAGTTATTGGGATTCTTCTGAGATCCAAGATACCCAAGGTGCTAATGGTACACAACCTTTTGGAGTTTCAGAAAGATTGAAATAAAGTATGCAAGGGTATAATTTGCATTTGATTAACAGGGCAGCTATTCTCTTGTGTTCCAACTTCTTATTTGATGTTGAAACCTGGAGACGGCTTTTCATGACGATTTAAGGGACTGCAGTATCATCTGCAAGCTTGTCAATTGTTTCTATGTACTAGAGTTCATCTCCATATGTAAAGAACAGAGACAGTGATACAGTATTAGACATGATATTTAGATCTGCCGAAATAGCTTATAAAAGGGACAAATTTATTCGTTACTTTAAATACGTTTGTCCTTATAGTTTATTGAACAAGGTACATTTGATCAATTTCTTTGAAGTGAAAGGAGGAAGGGAAGCCTGTAAAGATTTTCCATTTCACTTAAAAATTGAGTTCAACTGGCTTGTGAACTGGCAGTCTTTTCTTTCCA

Fln Alignment:

Contig14971___KIKGLSYITLLCGFYMAWNIGANDVANAMGTSVGSGALTLRQAVLTASILEFSGAFLMGSHVSDTMQKGILVANFFNGKDXXXXXXXXXXXXXXGTWLQFASSYGLPVSTTHCIVGAMLGFGLVYGGVAAVFWSSLGRVVLSWIISPAIGAAVASIVYKCIRTFVYSXXXXXXXXXXXXXXXVFFGVTVISYLAFPLSTIPLIATAQALGCGILGTILITSVINRQLGNLLALSKEAHLNEQQTPRRIDLLSEIAGPKGDQLKIVYSVFGYMQVLSACFMSFAHGANDVANAIGPLGAALSILKGTHLSG--NMVVPIDVLAWGGFGIVAGLMVWGYKVIATIGRKITELTPTRGFXXXXXXXXXXXXXSKLGLPISATHTLVGAVMGVGFARGLKNVRVETVREIVVSWFVTIPIGAALSVMYTWILMKLL
Q38954_______________KTKLLSYATLLFGFYMAWNIGANDVANAMGTSVGSGALTIRQAVMTAAVLEFSGALLMGTHVTSTMQKGILMANVFQGKDMLLFAGLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLAKVASSWVISPILGALVSFLVYKCIRRFVYSAPNPGQAAAAAAPVAVFVGVASISSAALPLSKIFPIALSQALACGVAGAIVFDRIIRKQLGHLLAKTKSPETSQNQ-PKTIGFLSDIAGPTGTQLEIVYGIFGYMQVLSACFMSFAHGGNDVSNAIGPLAAALSILQNGAAAGGAEIVIPMDVLAWGGFGIVAGLTMWGYRVIATIGKKITELTPTRGFAAEFAAASVVLFASKLGLPISATHTLVGAVMGVGFARGLNSVRAETVREIVASWLVTIPVGATLAVIYTWIFTKIL

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
134	20		80		0.995493
173			80	20	0.995493
1306	11		88		0.923564
1420		16		83	0.994512
1752	20		80		0.995493
1864			11	88	0.923564
1866			11	88	0.923564
1868		11	88		0.923564
1869		11		88	0.923564
1870	88			11	0.923564
1871			88	11	0.923564
1876	88			11	0.923564
1879		11	88		0.923564
1880	88		11		0.923564
1881		11		88	0.923564
1882	11		77	11	0.968132
1883		22	77		0.999999
1884	11		77		0.968132
1886			88	11	0.923564
2003	10	90			0.90298
2005	90		10		0.90298
2006	80		20		0.999996
2007			11	88	0.923564
2057	88			11	0.923564
2059	88		11		0.923564
2060	88		11		0.923564
2072		88		11	0.923564
2106	87			12	0.992554
2115	90	10			0.90298
2116	90			10	0.90298
2117	10	90			0.90298
2118	90			10	0.90298
2120	90	10			0.90298
2121			10	90	0.90298
2205		10		90	0.90298
2227	11		88		0.923564
2228			88	11	0.923564
2229	88			11	0.923564
2274	87	12			0.992554
2275	87		12		0.992554
2279	85		14		0.993533
2282	87	12			0.992554
2286			12	87	0.992554
2287		12		87	0.992554
2289		87	12		0.992554
2291	87	12			0.992554
2293		12	87		0.992554
2294	87			12	0.992554
2295		14		85	0.993533
2411	71		28		1.0
2441	87			12	0.992554
2539		83		16	0.994512
2599		45		54	1.0
2609	20		80		0.999996
2633		12		87	0.992554
2665	83	16			0.994512
2666	83		16		0.994512
2740			80	20	0.995493
2741		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain