SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14939

Length: 1714 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14939

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory particle non-ATPase subunit8 [Oryza sativa Japonica Group]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05780.1	RPN8A, AE3, ATHMOV34 RP non-ATPase subunit 8A chr5:1735862-1738176 FORWARD LENGTH=308	89%
RefSeq	Arabidopsis thaliana	NP_196197.1	26S proteasome regulatory subunit N8 [Arabidopsis thaliana]	89%
RefSeq	Populus trichocarpa	XP_002312144.1	predicted protein [Populus trichocarpa]	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKL6

Fln msg:

Fln protein: MDVIKTQQISARAIEKVIVHPLVLLSIVDNYNRVARDTRKRVIGVLLGTSFRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFEMFKRINAKEHVVGWYSTGPKLRENDLDVHELFHDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEICAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLEARLREIHGYLDLVVDGRLPLNHEILYHLQDVFNLLPNLNVNELVKAFAVKTNDMMLVIYLSSLIRSVIAMHNLINNKMLNKEHEKLADASSSPITAAAGS*

Protein Length: 312

Fln nts: AATGTATTAAAGAAGTGCAAGAGAGGGAAAAACACGAAGTAAAAGCGCCCACTGAAAAAAGAACACCGTGCTGGTCGGTGACACAGGAAAAAAGAAAAGAACGAAAAGGGGGTTTCCGAGAGAGTTTAAATGACTACATATAACTGAAGCTTGTGCGCAGAGCGAAAACTATTCGTTTTAAGCGGTTTCGGGTTCGAATCTGAGAAGCAGCAACTCGCCTCAAACAAACGGCAGAGGAGAGGAAAG_-_ATGGATGTGATAAAGACGCAGCAGATATCGGCGAGGGCAATAGAGAAAGTGATAGTGCATCCTTTGGTGTTGCTCAGCATCGTGGACAACTACAACAGAGTAGCGAGAGACACAAGGAAACGAGTTATTGGCGTGCTGCTGGGAACCAGCTTCCGCGGAGTCGTAGATGTAACTAATAGCTATGCAGTGCCTTTTGAAGAAGATGACAAGGATCCAAGCATCTGGTTTTTGGATCACAACTATCATGAATCTATGTTTGAAATGTTCAAGCGGATTAATGCAAAGGAGCATGTGGTAGGATGGTATAGCACTGGTCCAAAACTTCGGGAAAATGACTTGGATGTGCATGAGTTGTTCCACGACTATGTGCCCAATCCTGTGCTTGTCATTATTGATGTCCAACCGAAGGAGCTGGGGATTCCTACCAAAGCATACTATGCTGTGGAGGAAGTTAAAGAGAATGCAACTCAGAAAAGCCAGAAGGTATTTGTGCATGTGCCTTCTGAAATTTGTGCTCATGAAGTTGAGGAAATAGGTGTGGAGCACTTGCTAAGGGATGTCAAGGACACAACTATCAGTACTCTTGCAACAGAGGTGAGCGGGAAATTGACAGCATTGAAGGGTCTCGAGGCTCGGCTGAGGGAGATTCATGGATACTTGGATCTAGTAGTTGATGGAAGGCTTCCACTTAACCATGAAATTCTGTACCATCTTCAGGATGTATTCAATCTATTACCTAACTTGAATGTTAATGAGTTAGTGAAGGCTTTTGCAGTGAAAACAAATGACATGATGCTGGTTATCTATCTGTCCTCACTTATTCGGAGTGTCATTGCCATGCATAATCTCATTAACAACAAGATGCTAAACAAGGAACATGAGAAACTTGCAGATGCTTCATCCTCACCCATAACAGCCGCTGCAGGGAGTTAA___GTAGATGCTTCTGATTCCTTGGTAGTAAGAAAGATTGTAGCTGGATTCTTTTCAGAGGTTGTCTTTTGCAGCTCAAAATATTGGAGCTTCTATGAAAATTTTTGTGTACTGCCCATTTTTACCTCAATGCCGGCATTTGACTAGCAATTGGCAAGCAGTGAGTTGTTTTACCAGCTGCAGTCACAGGAACTAGATACTGCTCTTGCTTGGAACTTATTGGTAGCCAGCAGTTTCTTCCCTTTTATACGAGTACTGCATGCTGAAAAGTTCTGGCATTTTTTTATTCCATCATATCCTGTGCCATTTTTATTTATCATAGCTAGTGGATGTCAAGCTATCTGAATTAGTAGCTTATTAGTGACATGTACGAAGTTAATAAACAGGAATGGAGTATTTTTGCTCACTTATCTTCTTTTTATTGCACTTCAAGTTCAAATAGTAAAAGAAATGGGGAATTTTGATTGTTTTATATGGCCTAAAATAGGAAAAACCCTTGGAGCTACTGAACCACAAATATAATTAGATGTGACCTTTA

Fln Alignment:

Contig14939___MDVIKTQQISARAIEKVIVHPLVLLSIVDNYNRVARDTRKRVIGVLLGTSFRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFEMFKRINAKEHVVGWYSTGPKLRENDLDVHELFHDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEICAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLEARLREIHGYLDLVVDGRLPLNHEILYHLQDXXXXXXXXXXXXXXKAFAVKTNDMMLVIYLSSLIRSVIAMHNLINNKMLNKEHEKLADASSSPIT
A9NKL6_______________MDVIKTQQISARAIEKVIVHPLVLLSIVDNYNRVARDTRKRVIGVLLGTSFRGIVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFEMFKRINAKEHVVGWYSTGPKLRENDLDVHELFHDYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEICAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLEARLREIHQYLDLVVDGRLPLNHEILYHLQDVFNLLPNLNVNELVKAFAVKTNDMMLVIYLSSLIRSVIAMHNLINNKMLNKEHEKLADASSSPIT

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1547		33		66	1.0
1620		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain