SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14918

Length: 1959 nt

UniGene Fasta

>sp_v3.0_unigene14918
TGGGTCAAGAGATTGAAGCCCACGAGGGCTCTATTTGGACGATGAAGTTCAGTTTGGATGGGCGTTATCTAGCCAGTGCCGGTCAGGATTGTGTCATTCATGTACGAGAAGTGATTGAATCAATGAGAACGTTTGGGGCTGATACACCAGATTTATATGCTTCCAGTGCTTACTTTTCCATGAATGGTTTGCAAGAGCTAGTCCCCTTAAGTATTGAAGACCATGCAAACAAAATGAAAAGAGGGAAGATCATAGGCAGCAAAAAGAGTTCAAACTCAGACTGTATAGTTTTACCTAATAAGGTTTTCCAGCTCTCAGAGGAGCCAGTGTGTTCTTTTCATGGTCACCTTCTTGATGTATTTGATCTTTCATGGTCCCCATCACAGTATTTGCTTTCGTCTTCAATGGATAAAACAGTTCGACTATGGAAACTGGGACATGGAAGTTGTCTAAGGGTGTTCTCTCATAATGATATTGTGACCTGTATACAGTTCAATCCTGTTGATGAGAGATACTTCATAAGTGGTTCATTGGATGGAAAAGCCCGAATTTGGAGTATTCCAGACCGTCAGGTTGTTGACTGGAGTGATCTGCGCGAAATGGTCACTGCAGTATGTTACACTCCCGATGGACAGGGAGGACTAGTTGGATCTATCAAGGGAAGTTGCCGCTTCTATAATACATCAGGTAACAAGCTACAGTTAGAAAATCAACTGAATGTGTGTAGTAAGAAGAAAAAATCTTCTGGAAAGAAGATTACTGGTTTTCAGTTTGCACCAGGAAACTCTCAAAAAGTATTGATAACATCTGCTGACTCACGAATTCGAGTTTTTGATGGGGTTGACCTTGTCCAAAAGTATAAAGGTTTTCGAAACACCAACAGTCAAATAGCTGCCTCATTTACCGCAAATGGGAAATATGTCATATCTGCAAGTGAAGATTCATATGTGTATATTTGGAATTATGACTCTCCAAACACTCCAGCTGCTAGAAACCAAGGAGTCTGTCGGGCTTACGAGTATTTCCCTTCTCGGAGTGTGTCAGTTGCAATTCCTTGGTCTGGTATGAAGCCGGAACCTCTTGTATCACGTCAATGTGATTTAATGCCTGGTCAGAGGCGCAATCCTGAACTGCTGTTGCAAGGGACAGTGAGTACTGGACGAAAGAGTGGGTCCTTTCAGCAAGTGGCAATTTGTCGAAGCTTGGAGGCTAGTATGCAGAGTGCTTCTTATTTATCAACATCAGGCAATTCAGAGGCTCGTGGCAGTAGTGCTGATGGAAATGCCAACATTTTGGAAGGAGCGAGGGTTAGGGATAGAAGTGAAGGGTTTGTTCCAGAAACAATGAAGCCGCATGTGTTTTTGACATGTAATGGTAAAGCAAGTGTCTTAGGTAATATTAGAGGTGATGCATCTCTTAGTTCAGATTCTATGTCAGGCTCTCTTCAGGCCACCTTAACTGCCTCTTCTGCTTCTCATAGAGCATCCATGGATCATTCCAGCCTGAATCATGGGTTTTCAGCTGAGACTTTCTCTAAAGGTTCAGCAACATGGCCAGAGGAGAAGCTTTCTCCCTTTAGCCTTCAAGGTCCATCTAACCAATCAGTTGCTGAACCCCAAAACAGTCTTTATGAAACTGGAGACGGTACTACCATTCAAGACCAGTCTTCAAGTGCTGCCTGGGGTCTAGTAATTGTGACTGCAGGGCTTGGTGGGGAGATTAAAACGTTTCAAAATTATGGCTGGCCTGTTCGCCTTTGAGGTATCAAACTGCTCACTATAATCTGTTTGTTCCTACTTCCAAGAGAATTCATGATATGTTTTTAGTTGTAATTTAAATGCGATTTTATGAGCGGTATTCAGCGTCTTTCATATTCTGATGCCTCTATGTCTTCCTGTGTCTCCAGGATTTAATGTAATGTATAGATTCTTTTATGGGAGTTGTGTTTCTCCAAGTTCA

Ace file of the UniGene sp_v3.0_unigene14918

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T7M5_RICCO	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%
Sma3	WD-repeat protein, putative	-	-	2.708e-14	-

Source	Gene names
Sma3	AT1G64610; At1g64610; At2g37670; At3g15470; At5g02430; At5g24320; At5g42010; At5g53500; At5g54200; GSVIVT00006677001; GSVIVT00008646001; GSVIVT00021311001; GSVIVT00027633001; GSVIVT00034856001; GSVIVT00037226001; H0402C08.15; H0801D08.5; LOC_Os03g02440; L

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G15470.1	Transducin/WD40 repeat-like superfamily protein chr3:5216630-5219868 REVERSE LENGTH=883	60%
RefSeq	Arabidopsis thaliana	NP_566515.1	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002317512.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 573 - 314

Fln protein: MKFSLDGRYLASAGQDCVIHVREVIESMRTFGADTPDLYASSAYFSMNGLQELVPLSIEDHANKMKRGKIIGSKKSSNSDCIVLPNKVFQLSEEPVCSFHGHLLDVFDLSWSPSQYLLSSSMDKTVRLWKLGHGSCLRVFSHNDIVTCIQFNPVDERYFISGSLDGKARIWSIPDRQVVDWSDLREMVTAVCYTPDGQGGLVGSIKGSCRFYNTSGNKLQLENQLNVCSKKKKSSGKKITGFQFAPGNSQKVLITSADSRIRVFDGVDLVQKYKGFRNTNSQIAASFTANGKYVISASEDSYVYIWNYDSPNTPAARNQGVCRAYEYFPSRSVSVAIPWSGMKPEPLVSRQCDLMPGQRRNPELLLQGTVSTGRKSGSFQQVAICRSLEASMQSASYLSTSGNSEARGSSADGNANILEGARVRDRSEGFVPETMKPHVFLTCNGKASVLGNIRGDASLSSDSMSGSLQATLTASSASHRASMDHSSLNHGFSAETFSKGSATWPEEKLSPFSLQGPSNQSVAEPQNSLYETGDGTTIQDQSSSAAWGLVIVTAGLGGEIKTFQNYGWPVRL*

Protein Length: 574

Fln nts: TGGGTCAAGAGATTGAAGCCCACGAGGGCTCTATTTGGACG_-_ATGAAGTTCAGTTTGGATGGGCGTTATCTAGCCAGTGCCGGTCAGGATTGTGTCATTCATGTACGAGAAGTGATTGAATCAATGAGAACGTTTGGGGCTGATACACCAGATTTATATGCTTCCAGTGCTTACTTTTCCATGAATGGTTTGCAAGAGCTAGTCCCCTTAAGTATTGAAGACCATGCAAACAAAATGAAAAGAGGGAAGATCATAGGCAGCAAAAAGAGTTCAAACTCAGACTGTATAGTTTTACCTAATAAGGTTTTCCAGCTCTCAGAGGAGCCAGTGTGTTCTTTTCATGGTCACCTTCTTGATGTATTTGATCTTTCATGGTCCCCATCACAGTATTTGCTTTCGTCTTCAATGGATAAAACAGTTCGACTATGGAAACTGGGACATGGAAGTTGTCTAAGGGTGTTCTCTCATAATGATATTGTGACCTGTATACAGTTCAATCCTGTTGATGAGAGATACTTCATAAGTGGTTCATTGGATGGAAAAGCCCGAATTTGGAGTATTCCAGACCGTCAGGTTGTTGACTGGAGTGATCTGCGCGAAATGGTCACTGCAGTATGTTACACTCCCGATGGACAGGGAGGACTAGTTGGATCTATCAAGGGAAGTTGCCGCTTCTATAATACATCAGGTAACAAGCTACAGTTAGAAAATCAACTGAATGTGTGTAGTAAGAAGAAAAAATCTTCTGGAAAGAAGATTACTGGTTTTCAGTTTGCACCAGGAAACTCTCAAAAAGTATTGATAACATCTGCTGACTCACGAATTCGAGTTTTTGATGGGGTTGACCTTGTCCAAAAGTATAAAGGTTTTCGAAACACCAACAGTCAAATAGCTGCCTCATTTACCGCAAATGGGAAATATGTCATATCTGCAAGTGAAGATTCATATGTGTATATTTGGAATTATGACTCTCCAAACACTCCAGCTGCTAGAAACCAAGGAGTCTGTCGGGCTTACGAGTATTTCCCTTCTCGGAGTGTGTCAGTTGCAATTCCTTGGTCTGGTATGAAGCCGGAACCTCTTGTATCACGTCAATGTGATTTAATGCCTGGTCAGAGGCGCAATCCTGAACTGCTGTTGCAAGGGACAGTGAGTACTGGACGAAAGAGTGGGTCCTTTCAGCAAGTGGCAATTTGTCGAAGCTTGGAGGCTAGTATGCAGAGTGCTTCTTATTTATCAACATCAGGCAATTCAGAGGCTCGTGGCAGTAGTGCTGATGGAAATGCCAACATTTTGGAAGGAGCGAGGGTTAGGGATAGAAGTGAAGGGTTTGTTCCAGAAACAATGAAGCCGCATGTGTTTTTGACATGTAATGGTAAAGCAAGTGTCTTAGGTAATATTAGAGGTGATGCATCTCTTAGTTCAGATTCTATGTCAGGCTCTCTTCAGGCCACCTTAACTGCCTCTTCTGCTTCTCATAGAGCATCCATGGATCATTCCAGCCTGAATCATGGGTTTTCAGCTGAGACTTTCTCTAAAGGTTCAGCAACATGGCCAGAGGAGAAGCTTTCTCCCTTTAGCCTTCAAGGTCCATCTAACCAATCAGTTGCTGAACCCCAAAACAGTCTTTATGAAACTGGAGACGGTACTACCATTCAAGACCAGTCTTCAAGTGCTGCCTGGGGTCTAGTAATTGTGACTGCAGGGCTTGGTGGGGAGATTAAAACGTTTCAAAATTATGGCTGGCCTGTTCGCCTTTGAGGTATCAAACTGCTCACTATAATCTGTTTGTTCCTACTTCCAAGAGAATTCATGATATGTTTTTAGTTGTAATTTAAATGCGATTTTATGAGCGGTATTCAGCGTCTTTCATATTCTGATGCCTCTATGTCTTCCTGTGTCTCCAGGATTTAATGTAATGTATAGATTCTTTTATGGGAGTTGTGTTTCTCCAAGTTCA

Fln Alignment:

Contig14918___DKTVRLWKLGHGSCLRVFS-HNDIVTCIQFNPVDERYFISGSLDGKARIWSIPDRQVVDWSDLR-EMVTAVCYTPDGQGGLVGSIKGSCRFYNTSGNKLQLENQLNVCXXXXXXXXXXITGFQFAPGNSQKVLITSADSRIRVFDGVD--LVQKYKGFRNTNSQIAASFTA-NGKYVISASEDSYVYIWNYDSPN
A9NPC1_______________DKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNP-QSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATG--------HCLKTLIDDENPPVSFVNFSP-NGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQARN

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
882		83		16	0.994512
883	83		16		0.994512
885			16	83	0.994512
929		83		16	0.994512
966		14		85	0.993533
1041			57	42	1.0
1126		90		10	0.90298
1757			14	85	0.993533
1759		14		85	0.993533
1761	85			14	0.993533
1763	14		85		0.993533
1764		14		85	0.993533
1765	85	14			0.993533
1768	85			14	0.993533
1769	85		14		0.993533
1770	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain