SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14870

Length: 1361 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14870

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os01g0215700 protein n=4 Tax=Oryza sativa RepID=Q0JPL8_ORYSJ	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	Esterase	-	-	5.003e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on ester bonds, Carboxylic ester hydrolases.	EC:3.1.1.-	-	1.703e-27	-

Source	KEGGs	Term	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053	1.703e-27	%
Sma3	Bisphenol degradation	00363	1.703e-27	%
Sma3	Glycerophospholipid metabolism	00564	1.703e-27	%
Sma3	Toluene degradation	00623	1.703e-27	%
Sma3	Aminobenzoate degradation	00627	1.703e-27	%
Sma3	Retinol metabolism	00830	1.703e-27	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	1.703e-27	%

Source	Gene names
Sma3	At1g28570; At1g28580; At1g28590; At1g28600; At1g28610; At1g28640; At1g28650; At1g28660; At1g28670; At1g31550; At2g27360; At5g45910; F12K2.6; F1K23.13; F1K23.16; F1K23.17; F1K23.18; F1K23.19; F1K23.25; F1K23.6; F27M3.22; GSVIVT00015887001; GSVIVT0001870400

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G28590.1	GDSL-like Lipase/Acylhydrolase superfamily protein chr1:10047509-10049300 REVERSE LENGTH=403	45%
RefSeq	Arabidopsis thaliana	NP_174181.1	GDSL esterase/lipase [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002305752.1	predicted protein [Populus trichocarpa]	45%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWB0

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 347 - 388

Fln protein: FGDSLTDTGNGLASSPLVFRDIGSSPYGETFFHHPTGRCSNGRLVIDFLATALGFPFLQPYLKVGTLPLSERESGVNFAVAGATALDPSFLTERLILTQTELSLDVQVGWFQELKQATCTANSDCQHHFSEALYVMGEIGANDYLDSTFTLKPLEQIQSLTPLIISKVQNALQVLIENGAQYIFVQGIPPLGCSPSVLTVRSSLIKEDYDENSCLISYNQLSQNHNTLLQETLQQLRVQYPHVTLVYGDYYNIALEILKNHAAYGFSNIFQSCCGGGGTYNFNILSLCGSEGVVACSNPSTFTNWDGIHLTEATYEIASDFILNRAGYTQPSFSSLTGKACPRLKN*

Protein Length: 348

Fln nts: TGGGTTCAAGGCCAATATAAGAGAGGTTTAGATATATTTTTCTATATTTTTCTAGTAAGCAAAGATGAGGGGACGCACAAGATTGTTGTTAGGCTTGGTGATGCTGATGATTTGTCTTAGTCAAGTAAAACAGGTGAAAGCGACACCATGTTTTACAGCAATGTATAGTTTGGAGATTCATTAACTGACACTGGAAATGGATTGGCTTCATCTCCTTTGGTTTTCCGTGATATTGGGTCTTCTCCATACGGGGAAACCTTTTTCCACCATCCAACAGGGCGTTGTTCAAATGGACGTCTAGTCATAGACTTTTTGGCCACTGCATTAGGGTTTCCTTTCCTCCAGCCTTATCTTAAAGTGGGCACATTGCCACTAAGTGAGAGGGAATCTGGAGTCAACTTTGCTGTTGCTGGTGCCACTGCATTGGACCCTTCATTTTTAACTGAAAGATTAATACTTACTCAAACAGAATTATCCTTAGATGTGCAAGTTGGATGGTTCCAAGAGTTGAAACAAGCCACATGCACAGCAAATTCTGATTGCCAGCATCATTTCTCGGAAGCTTTGTATGTGATGGGTGAAATTGGAGCAAACGACTATTTAGATTCCACTTTTACACTAAAACCATTGGAGCAAATACAAAGCCTCACTCCTCTCATCATATCAAAAGTTCAGAATGCTTTACAGGTATTGATAGAAAATGGAGCTCAATATATCTTTGTTCAAGGAATTCCACCATTGGGATGTTCACCTTCAGTTCTCACTGTTCGATCATCTCTCATCAAAGAAGATTATGATGAGAATAGTTGTCTCATATCCTACAATCAACTTTCCCAAAATCATAATACATTGTTGCAGGAAACATTGCAACAATTAAGGGTCCAATATCCACATGTCACTCTGGTATATGGAGATTACTATAATATTGCTTTAGAAATACTCAAAAATCATGCAGCATATGGTTTTAGTAACATATTTCAATCTTGTTGTGGAGGCGGAGGTACTTACAACTTCAATATCCTTAGTCTATGTGGATCAGAAGGGGTAGTTGCATGTTCGAATCCATCAACATTTACCAATTGGGATGGCATACATCTAACTGAAGCTACATATGAAATCGCCTCAGATTTCATTCTCAATAGAGCCGGTTACACACAGCCATCTTTCAGCTCTTTGACCGGGAAAGCTTGTCCTAGACTTAAGAATTGA___ATACACTAAGTAGGAAATATACTATTGTTTCAAACATAAAGGTAGTTTTTGTTAAGATGTTTTGTTATACCAAATGGTGAATATACAGAGATTATATAAATAGTTGAACGATCAAATTTTTAATAGTTATTCAATTGATTCTAATTACTGGC

Fln Alignment:

Contig14870___FGDSLTDTGNGLASSPLVFRDIGSSPYGETFFHHPTGRCSNGRLVIDFLATALGFPFLQPYLKVGTLPLSERESGVNFAVAGATALDPSFLTERLILTQ-TELSLDVQVGWFQELKQATCTANSDCQHHFSEALYVMGEIGANDYLDSTFTLKPLEQIQSLTPLIISKVQNALQVLIENGAQYIFVQGIPPLGCSPSVLTVRSSLIKEDYDENSCLISYNQLSQNHNTLLQETLQQLRVQYPHVTLVYGDYYNIALEILKNHAAYGFS-NIFQSCCGGGGTYNFNILSLCGSEGVVACSNPSTFTNWDGIHLTEATYE-IASDFI
A9NWB0_______________FGDSLADTGNLLISGAQQFGPISELPYGQTYFNKPTGRCSNGRLIVDFIAQAYGFQFLPPFLDKH----ADFSNGANFAVAGATAMDASFFEERHIEPIFTNFSLDTQIEWFKTFKENYCYGTPDCADHFENALFLIGEIGGNDYNYPFAQGRSLEEVSTFVPLIVQKIKGAIEELIDEGAKKFFVQGNLPIGCSPFYLTTQQTNSSADLDHMGCLVKFNNFSQYSNLHIRNMLLDVQGKHQNISIIYADYFSAALKVLSNPKQYGLQRNVLRVCCGRGGKYNFSPPTSC-SPNVSSCLNPEQYFNWDGVHLTETAYRTIAKMFV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
547	22		77		0.999999
595		50		50	1.0
613		14		85	0.993533
637	62		37		1.0
671	25		75		1.0
754		10		90	0.90298
797		11	88		0.923564
800			88	11	0.923564
815	85		14		0.993533
1064	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain