SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14764

Length: 2826 nt

UniGene Fasta

>sp_v3.0_unigene14764
GTCCACACAGGCGCATGGACTTAAGATTGATTTTAGATAAGATAATGAGATAAAAAGAAGAGCAAGGAACTTGCTTCGCTTTTACTTCTTCCATTTCTTGCTTTACGAGAATTTCTTCGTCGTTCTCCTCCGACCTCAATGGCGACGACCATGGCGATGGCATCGTCTGCTGTAATCCAATCGAATGCTAATCAGTTAAGTTCGATGGGTTTCGCATTCTCGTCTGGAAGTCTACGCCACCAAATCAAGCCTACAAAGCTCGAATCCATGAAGTTGGGAAGGCGGGTTGGTAAAGCTTATGCCAGTGCTTTATCTGACCAAGGAGAGTACTATTCAGAGAAGCCACCGACACCTCTCCTGGACACAATCAATTATCCGATTCATATGAAGAATCTCTCTATTCGAGAGCTTAAACAACTTTCAAATGAACTTCGTTCTGACACAATTTTCGAGGTTTCAAGAACTGGTGGCCACCTTGGATCTAGCCTTGGTGTGGTTGAGCTTACGGTGGCACTTCATTATGTCTTTGATGCTCCTGAGGATAAGATATTATGGGACGTTGGCCATCAGGCTTATCCTCACAAGATTCTTACTGGAAGAAGAGATAAGATGCCCACATTAAGACAGACAAATGGCCTCTCAGGCTTTACAAAACGTTCAGAGAGTGAATATGACTGCTTTGGTGCCGGTCACAGCTCTACTAGTATATCTGCTGGGCTAGGCATGGCTGTTGGTCGTGACTTGAAAGGGAAAAACAATCATGTCATCAGTGTCATTGGAGATGGAGCCATGACAGCTGGGCAAGCTTTTGAAGCTATGAACAATGCAGGATATTTGGATTCCAACATGATAGTTATTCTGAATGACAACAAACAAGTTTCTCTGCCAACAGCAAATCTTGATGGGCCTATACCACCAGTGGGTGCACTCAGCAGTGCACTGAGTAAGCTTCAATCAAGTAAACCTTTGCGTGAACTAAGAGAGGTTGCCAAGGGTGTTACCAAACAACTGGGCGCCCCCATGCATGAACTGGCAGCAAAAGTGGACGAGTATGCACGAGGTATGATCAGTGGTTCCCGTTCCACGCTGTTTGAGGAGCTGGGACTCTATTATATAGGTCCAGTTGATGGCCACAATATTGATGATCTACTCACCATTCTTCGGGACGTCAAAGCTACACACACAACTGGGCCAGTGTTGATCCATGTTGTTACTGAGAAAGGACGGGGTTACCCATATGCAGAAAGAGCAGCTGACAAGTACCATGGTGTTGTCAAGTTTGATCCCGCCACAGGCAAGCAATTCAAGGGGAAGGCTCCAACTCAAACCTACACAACTTATTTTGCCGAGGCTTTGATTTCAGAAGCTGAAGCTGACAAAAATATTGTTGCAATCCATGCTGCAATGGGTGGAGGCACTGGCCTAAATATGTTTTCCAAGCGCTTTCCTACAAGATGTTTTGATGTTGGAATAGCAGAACAACATGCTGTCACTTTTGCTGCAGGGTTGGCTTGTGAAGGCCTGAAGCCTTTTTGTGCTATATATTCCTCTTTTCTGCAAAGGGCCTATGATCAGGTTATACATGATGTAGACCTGCAGAAATTGCCTGTCAGATTTGCGATGGATAGAGCAGGGCTAGTTGGAGCAGATGGTCCAACTCATTGTGGAGCATTTGATGTGACTTATTTGGCTTGTCTTCCAAATATGGTAGTCATGGCACCTTCGAACGAGGCCGAACTATTTCACATGGTTGCAACCGCAGCTGCTATTGATGATCGCCCTAGTTGCTTCAGATTTCCACGAGGCAATGGAGTAGGTGCACAGCTGCCACCTGGTAACAAAGGAGTACCCTTAGAGATTGGGAAAGGTAGAATTTTAGTTGAAGGTGATCGAATAGCAATCTTAGGGTATGGTACTGTTGTTCAAAATTGCCTTGCTGCCAGTGCTTTACTGGAAGAGCAAGATTTATCTGTGACAGTTGCAGATGCCAGATTCTGCAAGCCACTTGATCGTGATCTAATTCGATCTCTTGCAAGGGAGCACGAGGTATTAATAACAGTCGAGGAGGGAACAATAGGAGGTTTTGGATCACATGTTGCTCATTTTCTGGCTTTAGATGGTTTCTTGGACGGGAAATTAAAGTGGAGACCAATGGTTCTTCCTGACCACTACATCGAACACGGGGCTCCAAGTGATCAAATGATTGAAGCCGGTTTGACAGCATCTCATATCGCGGCATCAGTATTGAATGTGCTGGGGCGAACAAGAGAAGCACTGCAAGTAATGTCTTGAAGATGTCAAATGATTGGATTCCAAGGTGTTAATCAGAGGGCATTTCTGAGCTGCTCTTCTTACCATCTCGAGCTGCAAGCCATAGCAGCTCATAAAGTCTGGCATATAGTGTACTTTATCGAAAAGCTGTCATCTTTCTCTATCCGATTCGGATGGCCAAATCACCATCACATTGATACAGCTGTTCCTGGTTGTTCATTGTCTGGTTTTGGTTGATTGGATGACGGGCAATTGAACTTTTTAATTTTGATTGTACAACATCCGATTATAAATGTCGAGTTCTTATGTCTGCTGTCTCAGACATATCGAGGATCTCGATATCTGTAAAAGTAATGTATTTATGTTACAGTTGCCCACTGTCATACCAGCTTTCCTTGGATTATCTCCATGAGAAGTCATTTCCTTTTTTTGCTAACAAGGCGAGACGGTTGGCCATCTTCTTATGAATGTTGCATGTCAATTTGGCATCTGACTATGGTGTTACCTTAATTATATTCTTATTATCATGCTCTCTCTCAGAGAAGCACAACTCTG

Ace file of the UniGene sp_v3.0_unigene14764

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	1-deoxy-D-xylulose 5-phosphate synthase type I n=3 Tax=Pinaceae RepID=A7LA00_PICAB	-	-	92%
FL-Next	tr=Putative 1-D-deoxyxylulose 5-phosphate synthase type 1; Pinus densiflora (Japanese red pine).	-	-	96%
Sma3	Putative 1-D-deoxyxylulose 5-phosphate synthase type 1	-	-	-

Source	Gene names
Sma3	DXS1;

Source	InterPros	Term	Type	Identity
Sma3	Deoxyxylulose-5-phosphate synthase	IPR005477	-	-
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Transketolase, N-terminal	IPR005474	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G15560.1	CLA1, DEF, CLA, DXS, DXPS2 Deoxyxylulose-5-phosphate synthase chr4:8884218-8887254 FORWARD LENGTH=717	83%
RefSeq	Arabidopsis thaliana	NP_193291.1	Deoxyxylulose-5-phosphate synthase [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002312717.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B9U4U6

Fln msg:

Fln protein: MATTMAMASSAVIQSNANQLSSMGFAFSSGSLRHQIKPTKLESMKLGRRVGKAYASALSDQGEYYSEKPPTPLLDTINYPIHMKNLSIRELKQLSNELRSDTIFEVSRTGGHLGSSLGVVELTVALHYVFDAPEDKILWDVGHQAYPHKILTGRRDKMPTLRQTNGLSGFTKRSESEYDCFGAGHSSTSISAGLGMAVGRDLKGKNNHVISVIGDGAMTAGQAFEAMNNAGYLDSNMIVILNDNKQVSLPTANLDGPIPPVGALSSALSKLQSSKPLRELREVAKGVTKQLGAPMHELAAKVDEYARGMISGSRSTLFEELGLYYIGPVDGHNIDDLLTILRDVKATHTTGPVLIHVVTEKGRGYPYAERAADKYHGVVKFDPATGKQFKGKAPTQTYTTYFAEALISEAEADKNIVAIHAAMGGGTGLNMFSKRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRAYDQVIHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYLACLPNMVVMAPSNEAELFHMVATAAAIDDRPSCFRFPRGNGVGAQLPPGNKGVPLEIGKGRILVEGDRIAILGYGTVVQNCLAASALLEEQDLSVTVADARFCKPLDRDLIRSLAREHEVLITVEEGTIGGFGSHVAHFLALDGFLDGKLKWRPMVLPDHYIEHGAPSDQMIEAGLTASHIAASVLNVLGRTREALQVMS*

Protein Length: 719

Fln nts: GTCCACACAGGCGCATGGACTTAAGATTGATTTTAGATAAGATAATGAGATAAAAAGAAGAGCAAGGAACTTGCTTCGCTTTTACTTCTTCCATTTCTTGCTTTACGAGAATTTCTTCGTCGTTCTCCTCCGACCTCA_-_ATGGCGACGACCATGGCGATGGCATCGTCTGCTGTAATCCAATCGAATGCTAATCAGTTAAGTTCGATGGGTTTCGCATTCTCGTCTGGAAGTCTACGCCACCAAATCAAGCCTACAAAGCTCGAATCCATGAAGTTGGGAAGGCGGGTTGGTAAAGCTTATGCCAGTGCTTTATCTGACCAAGGAGAGTACTATTCAGAGAAGCCACCGACACCTCTCCTGGACACAATCAATTATCCGATTCATATGAAGAATCTCTCTATTCGAGAGCTTAAACAACTTTCAAATGAACTTCGTTCTGACACAATTTTCGAGGTTTCAAGAACTGGTGGCCACCTTGGATCTAGCCTTGGTGTGGTTGAGCTTACGGTGGCACTTCATTATGTCTTTGATGCTCCTGAGGATAAGATATTATGGGACGTTGGCCATCAGGCTTATCCTCACAAGATTCTTACTGGAAGAAGAGATAAGATGCCCACATTAAGACAGACAAATGGCCTCTCAGGCTTTACAAAACGTTCAGAGAGTGAATATGACTGCTTTGGTGCCGGTCACAGCTCTACTAGTATATCTGCTGGGCTAGGCATGGCTGTTGGTCGTGACTTGAAAGGGAAAAACAATCATGTCATCAGTGTCATTGGAGATGGAGCCATGACAGCTGGGCAAGCTTTTGAAGCTATGAACAATGCAGGATATTTGGATTCCAACATGATAGTTATTCTGAATGACAACAAACAAGTTTCTCTGCCAACAGCAAATCTTGATGGGCCTATACCACCAGTGGGTGCACTCAGCAGTGCACTGAGTAAGCTTCAATCAAGTAAACCTTTGCGTGAACTAAGAGAGGTTGCCAAGGGTGTTACCAAACAACTGGGCGCCCCCATGCATGAACTGGCAGCAAAAGTGGACGAGTATGCACGAGGTATGATCAGTGGTTCCCGTTCCACGCTGTTTGAGGAGCTGGGACTCTATTATATAGGTCCAGTTGATGGCCACAATATTGATGATCTACTCACCATTCTTCGGGACGTCAAAGCTACACACACAACTGGGCCAGTGTTGATCCATGTTGTTACTGAGAAAGGACGGGGTTACCCATATGCAGAAAGAGCAGCTGACAAGTACCATGGTGTTGTCAAGTTTGATCCCGCCACAGGCAAGCAATTCAAGGGGAAGGCTCCAACTCAAACCTACACAACTTATTTTGCCGAGGCTTTGATTTCAGAAGCTGAAGCTGACAAAAATATTGTTGCAATCCATGCTGCAATGGGTGGAGGCACTGGCCTAAATATGTTTTCCAAGCGCTTTCCTACAAGATGTTTTGATGTTGGAATAGCAGAACAACATGCTGTCACTTTTGCTGCAGGGTTGGCTTGTGAAGGCCTGAAGCCTTTTTGTGCTATATATTCCTCTTTTCTGCAAAGGGCCTATGATCAGGTTATACATGATGTAGACCTGCAGAAATTGCCTGTCAGATTTGCGATGGATAGAGCAGGGCTAGTTGGAGCAGATGGTCCAACTCATTGTGGAGCATTTGATGTGACTTATTTGGCTTGTCTTCCAAATATGGTAGTCATGGCACCTTCGAACGAGGCCGAACTATTTCACATGGTTGCAACCGCAGCTGCTATTGATGATCGCCCTAGTTGCTTCAGATTTCCACGAGGCAATGGAGTAGGTGCACAGCTGCCACCTGGTAACAAAGGAGTACCCTTAGAGATTGGGAAAGGTAGAATTTTAGTTGAAGGTGATCGAATAGCAATCTTAGGGTATGGTACTGTTGTTCAAAATTGCCTTGCTGCCAGTGCTTTACTGGAAGAGCAAGATTTATCTGTGACAGTTGCAGATGCCAGATTCTGCAAGCCACTTGATCGTGATCTAATTCGATCTCTTGCAAGGGAGCACGAGGTATTAATAACAGTCGAGGAGGGAACAATAGGAGGTTTTGGATCACATGTTGCTCATTTTCTGGCTTTAGATGGTTTCTTGGACGGGAAATTAAAGTGGAGACCAATGGTTCTTCCTGACCACTACATCGAACACGGGGCTCCAAGTGATCAAATGATTGAAGCCGGTTTGACAGCATCTCATATCGCGGCATCAGTATTGAATGTGCTGGGGCGAACAAGAGAAGCACTGCAAGTAATGTCTTGA___AGATGTCAAATGATTGGATTCCAAGGTGTTAATCAGAGGGCATTTCTGAGCTGCTCTTCTTACCATCTCGAGCTGCAAGCCATAGCAGCTCATAAAGTCTGGCATATAGTGTACTTTATCGAAAAGCTGTCATCTTTCTCTATCCGATTCGGATGGCCAAATCACCATCACATTGATACAGCTGTTCCTGGTTGTTCATTGTCTGGTTTTGGTTGATTGGATGACGGGCAATTGAACTTTTTAATTTTGATTGTACAACATCCGATTATAAATGTCGAGTTCTTATGTCTGCTGTCTCAGACATATCGAGGATCTCGATATCTGTAAAAGTAATGTATTTATGTTACAGTTGCCCACTGTCATACCAGCTTTCCTTGGATTATCTCCATGAGAAGTCATTTCCTTTTTTTGCTAACAAGGCGAGACGGTTGGCCATCTTCTTATGAATGTTGCATGTCAATTTGGCATCTGACTATGGTGTTACCTTAATTATATTCTTATTATCATGCTCTCTCTCAGAGAAGCACAACTCTG

Fln Alignment:

Contig14764___VIQSNANQLSSMGFAFSSGSLRHQIKPTKLESMKLGRRVGKAYASALSDQGEYYSEKPPTPLLDTINYPIHMKNLSIRELKQLSNELRSDTIFEVSRTGGHLGSSLGVVELTVALHYVFDAPEDKILWDVGHQAYPHKILTGRRDKMPTLRQTNGLSGFTKRSESEYDCFGAGHSSTSISAGLGMAVGRDLKGKNNHVISVIGDGAMTAGQAFEAMNNAGYLDSNMIVILNDNKQVSLPTANLDGPIPPVGXXXXXXXXXXXXXXXRELREVAKGVTKQLGAPMHELAAKVDEYARGMISGSRSTLFEELGLYYIGPVDGHNIDDLLTILRDVKATHTTGPVLIHVVTEKGRGYPYAERAADKYHGVVKFDPATGKQFKGKAPTQTYTTYFAEALISEAEADKNIVAIHAAMGGGTGLNMFSKRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRAYDQVIHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYLACLPNMVVMAPSNEAELFHMVATAAAIDDRPSCFRFPRGNGVGAQLPPGNKGVPLEIGKGRILVEGDRIAILGYGTVVQNCLAASALLEEQDLSVTVADARFCKPLDRDLIRSLAREHEVLITVEEGTIGGFGSHVAHFLALDGFLDGKLKWRPMVLPDHYIEHGAPSDQMIEAGLTASHIAASVLNVLGRTREALQVMS
B9U4U6_______________VIQSNANQLSSMGFAFSSGSLCHQIKPAKLESKKLGRRVGKAYASALSDQGEYYSEKPPTPLLDTINYPIHMKNLSIRELKQLSNELRSDIIFEVSRTGGHLGSSLGVVELTVALHYVFDAPEDKILWDVGHQAYPHKILTGRRDKMPTLRQTNGLSGFTKRSESEYDCFGAGHSSTSISAGLGMAAGRDLKGKNNHVISVIGDGAMTAGQAFEAMNNARYLDSNMIVILNDNKQVSLPTANLDGPIPPVGALSKLQSSKPL----RELREVAKGVTKQLGAPMHELAAKVDEYARGMISGSRSTLFEELGLYYIGPVDGHNIDDLLTILRDVKATHTTGPVLIHVVTEKGRGYPYAERAADKYHGVVKFDPATGKQFKGKAPTQTYTTYFAEALISEAEADKNIVAVHAAMGGGTGLNMFSKRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRAYDQVIHDVDLQNLPVRFAMDRAGLVGADGPTHCGAFDVTYLACLPNMVVMAPSNEAELFHMVATAAAIDDRPSCFGFPRGNGVGAQLPPGNKGVPLEIGKGRILVEGDRVALLGYGTVVQNCLAASALLEEQDLSVTVADARFCKPLDRDLVRSLAREHEVLITVEEGTIGGFGSHVAHFLALDGFLDGKLKWRPMVLPDHYIEHGAPSDQMIEAGLTASHIAASVLNMLGRTREALQVMS

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1293	70			30	1.0
1307	90			10	0.90298
1308			88	11	0.923564
1311	12		87		0.992554
1312	87	12			0.992554
1314			88	11	0.923564
1315			88	11	0.923564
1352	10	90			0.90298
1355			10	90	0.90298
1417	87		12		0.992554
1440	10		90		0.90298
1848	85		14		0.993533
1979		16		83	0.994512
2072		85		14	0.993533
2280	89		10		0.999919
2476	12		87		0.999964
2513	88		11		0.923564
2541			88	11	0.923564
2619	88	11			0.923564
2758	12		87		0.992554
2765	66		33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain