SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14687

Length: 518 nt

UniGene Fasta

>sp_v3.0_unigene14687
GTGGTGGATAGCAGGCGGAGGAGGAGGAATCAGAGGAAGAAGAGGAAGATGACGGGGACGATGACGACAACGATGATGACGAAGAGGGGGAAAAGCCCACCAAGAAGCGCAGGCTCAATGCTGTCGCTGCCGTTAACGGATCACGGCAGTCTCTCGCAACGGACTCGTTTCACGCTGTTCCCGCCGGATCTGCTCTCAGAAGGTGCAGTGTTAAGGCAGAAAGGCAAAATCAAAATCCCGAAGTAACAGAAACTGTTGCAGATGCAACATCAGATCCTCTGACCGAAACACCTATGCCAGAGAATGGATTGCTTGAATTTGTCCTTGACAAGCTTCAAAAAAAGATACTTATGGTGTATTTGCTAAGCCCGTGGATCCCAACGAGCTCCCAGATTACCATGAAATCATACAAAACCCAATGGATTTTGGTACAATACGGAAGAAGCTTGCAAAAGGAGCATATGTGTCTTTTGAACAGTTTGAGAAGGACGTCCTTTTGATTACTACCAATGTCAATG

Ace file of the UniGene sp_v3.0_unigene14687

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bromodomain-containing protein n=1 Tax=Ricinus communis RepID=B9S4L0_RICCO	-	-	2.0e-23	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	Bromodomain protein	-	-	1.516e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone acetyltransferase.	EC:2.3.1.48	-	7.792e-06	-

Source	Gene names
Sma3	At1g20670; At1g76380; At1g76380/F15M4_12; At5g55040; BRD1501; BRD1502; BRD901; BRD902; BRD903; BRD904; F15M4.12; GSVIVT00002889001; GSVIVT00027307001; GSVIVT00036274001; LOC_Os03g03870; OJ1210_A07.24; Os03g0130800; Os09g0550000; OsI_09853; OsI_26165; OsI_

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G76380.2	DNA-binding bromodomain-containing protein chr1:28651416-28654536 REVERSE LENGTH=580	4.0e-22	67%
RefSeq	Arabidopsis thaliana	NP_974153.1	DNA-binding bromodomain-containing protein [Arabidopsis thaliana]	5.0e-22	67%
RefSeq	Populus trichocarpa	XP_002300638.1	bromodomain protein [Populus trichocarpa]	5.0e-25	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPU6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 36 aas, your sequence is shorter than subject: 172 - 630

Fln protein: WWIAGGGGGIRGRRGR*RGR*RQR**RRGGKAHQEAQAQCCRCR*RITAVSRNGLVSRCSRRICSQKVQC*GRKAKSKSRSNRNCCRCNIRSSDRNTYAREWIA*ICP*QASKKDTYGVFAKPVDPNELPDYHEIIQNPMDFGTIRKKLAKGAYVSFEQFEKDVLLITTNVN

Protein Length: 173

Fln nts: GTGGTGGATAGCAGGCGGAGGAGGAGGAATCAGAGGAAGAAGAGGAAGATGACGGGGACGATGACGACAACGATGATGACGAAGAGGGGGAAAAGCCCACCAAGAAGCGCAGGCTCAATGCTGTCGCTGCCGTTAACGGATCACGGCAGTCTCTCGCAACGGACTCGTTTCACGCTGTTCCCGCCGGATCTGCTCTCAGAAGGTGCAGTGTTAAGGCAGAAAGGCAAAATCAAAATCCCGAAGTAACAGAAACTGTTGCAGATGCAACATCAGATCCTCTGACCGAAACACCTATGCCAGAGAATGGATTGCTTGAATTTGTCCTTGACAAGCTTCAAAAAAAGATACTTATGGTGTATTTGCTAAGCCCGTGGATCCCAACGAGCTCCCAGATTACCATGAAATCATACAAAACCCAATGGATTTTGGTACAATACGGAAGAAGCTTGCAAAAGGAGCATATGTGTCTTTTGAACAGTTTGAGAAGGACGTCCTTTTGATTACTACCAATGTCAATG

Fln Alignment:

Contig14687___FAKPVDPNELPDYHEIIQNPMDFGTIRKKL-AKGAYVSFEQFEKDVLLITTN
B8LPU6_______________FKDPVDPRDVPDYYDIIKDPMDLKTMSKRLDSEQYYVTLDMFVADVKRMFTN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
329			85	14	0.993533
330	85		14		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
17	28	GGA GGA GGA GGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain