SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14599

Length: 391 nt

UniGene Fasta

>sp_v3.0_unigene14599
ATGGGGAAGGCTTGAAGATCCAAACAAGGAAGACAAACGTATCAGTTATGCGCGGGTCCATAAGCGCATTTTGAAGCTTCTAGGCCCTGGAGAAATCTCAATGAGGAACGGATCAAGGATTTCTACGGCACTACCACTGAGCGCGCGGGACGAAACAGGCGAATCATGGTGGCAGAAAAAGGAGAAATGGCTTATTGTGATGGGTATTGTACTGCACGCAGTTTACATGATGAGTATTTTCGACATATACTTCAAGAGTCCCATTGTCCATGGAATGGATCCTGTTACTCCTCGCATCGACCCTCCCGCCAAACGACTCGTGCTTTTCATTGCGGATGGCTTGCGTGCTGACAAATTCTTTGAGCTGGAGAGTGATGGACAGCCTAGGGCT

Ace file of the UniGene sp_v3.0_unigene14599

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative phosphatidylinositolglycan class N short form [Arabidopsis thaliana]	-	-	2.0e-25	61%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	73%

Source	Gene names
Sma3	At3g01380; GSVIVT00020799001; Os02g0581000; OsI_07815; OsJ_07276; PHYPADRAFT_128153; POPTRDRAFT_829721; RCOM_0852450; T13O15.2;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	GPI anchor biosynthetic process	GO:0006506	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPI ethanolamine phosphate transferase 1	IPR007070	-	-
Sma3	Alkaline phosphatase-like, alpha/beta/alpha	IPR017849	-	-
Sma3	GPI ethanolamine phosphate transferase 1, C-terminal	IPR017852	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G01380.1	" transferases;sulfuric ester hydrolases;catalytics;transferases chr3:144288-149828 REVERSE LENGTH=993"	1.0e-30	61%
RefSeq	Arabidopsis thaliana	NP_186787.4	sulfatase and phosphatidylinositolglycan class N domain-containing protein [Arabidopsis thaliana]	1.0e-30	61%
RefSeq	Populus trichocarpa	XP_002300025.1	predicted protein [Populus trichocarpa]	4.0e-31	58%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7TWU5

Fln msg: Distance to subject end: 887 aas, your sequence is shorter than subject: 97 - 986

Fln protein: MRNGSRISTALPLSARDETGESWWQKKEKWLIVMGIVLHAVYMMSIFDIYFKSPIVHGMDPVTPRIDPPAKRLVLFIADGLRADKFFELESDGQPRA

Protein Length: 98

Fln nts: ATGGGGAAGGCTTGAAGATCCAAACAAGGAAGACAAACGTATCAGTTATGCGCGGGTCCATAAGCGCATTTTGAAGCTTCTAGGCCCTGGAGAAATCTCA_-_ATGAGGAACGGATCAAGGATTTCTACGGCACTACCACTGAGCGCGCGGGACGAAACAGGCGAATCATGGTGGCAGAAAAAGGAGAAATGGCTTATTGTGATGGGTATTGTACTGCACGCAGTTTACATGATGAGTATTTTCGACATATACTTCAAGAGTCCCATTGTCCATGGAATGGATCCTGTTACTCCTCGCATCGACCCTCCCGCCAAACGACTCGTGCTTTTCATTGCGGATGGCTTGCGTGCTGACAAATTCTTTGAGCTGGAGAGTGATGGACAGCCTAGGGCT

Fln Alignment:

Contig14599___WWQKKEKWLIVMGIVLHAVYMMSIFDIYFKSPIVHGMDPVTPRIDPPAKRLVLFIADGLRADKFFELESDGQPRA
D7TWU5_______________WLKRRERWLVVLGVVLHAVYMLSIFDIYFKTPIIHGMDPVTPRFKAPAKRLVLLVADGLRADKFFEPDSDGNYRA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
267		25		75	0.996473
318	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain