SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14340

Length: 1089 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14340

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF679 domain containing protein	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%

Source	Gene names
Sma3	AT4g24310; At3g02430; At3g21550; At4g18425; At4g24310; At4g28485; At5g46090; F16B3.6; GSVIVT00001645001; GSVIVT00003045001; GSVIVT00018646001; GSVIVT00019862001; GSVIVT00035393001; LOC_Os03g25440; MtrDRAFT_AC158497g10v2; MtrDRAFT_AC158497g16v2; OJ1115_B06

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Protein of unknown function DUF679	IPR007770	-	-
Sma3		IPR012287	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G18425.1	Protein of unknown function (DUF679) chr4:10181421-10182062 REVERSE LENGTH=213	57%
RefSeq	Arabidopsis thaliana	NP_567556.1	uncharacterized protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002329841.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMJ7

Fln msg:

Fln protein: MGSTGEITESLIVKEEGWGSEIIPESNGYEFHKKTRDSDEIINRDQCRNTLIQRIVNQTFASTAHLANLLPTGTVLAFQVLSPLFSNNGHCDTATRVMTQILVFLCGISCFLVSFTDSFRAPDGNIYYGIATPRGLWTFDYVGSGNQALEQGKYRLRFVDFAHAFMSVMVFSAIALSDQNVVNCFYPAAQGETKEILDALPVGIGAISSMLFIAFPTTRHGIGFPVTATSD*

Protein Length: 233

Fln nts: ATGGGATCTTGAAACCCCACTATCGATTATTGCAGCATCAGAGGTGAAGAT_-_ATGGGAAGCACAGGTGAAATCACAGAATCTCTAATTGTTAAAGAAGAAGGATGGGGTTCAGAAATTATCCCTGAAAGCAATGGCTATGAATTTCATAAGAAAACAAGGGATTCAGATGAAATAATCAATAGGGATCAATGCAGGAACACTCTGATCCAGAGGATTGTGAACCAAACATTTGCAAGCACGGCCCATTTGGCAAATCTCCTCCCCACTGGGACCGTTCTCGCCTTCCAGGTTCTGAGTCCCCTGTTCTCCAACAATGGCCACTGCGACACAGCGACCCGTGTGATGACCCAAATTCTTGTGTTCCTGTGCGGAATTTCTTGCTTCCTCGTCTCCTTCACAGACAGTTTTCGGGCACCCGACGGGAATATTTATTACGGCATCGCCACCCCGCGAGGGCTGTGGACTTTCGATTATGTGGGCTCGGGGAATCAGGCCCTTGAGCAGGGCAAGTACAGGCTTCGATTTGTGGATTTTGCGCATGCATTTATGTCAGTCATGGTGTTCAGCGCTATTGCTCTCTCGGACCAAAATGTGGTGAACTGTTTCTACCCGGCGGCTCAGGGGGAAACCAAGGAGATTCTGGACGCGTTGCCTGTGGGGATTGGGGCCATTTCCAGCATGCTGTTCATTGCGTTTCCCACCACACGCCATGGTATTGGATTTCCAGTCACTGCAACATCTGATTGA___ACTGCCCAGGGCGCAGGGCAGTTCAATGGGCGATCACCATATTATGAAACATCTGATTGAACTTCCCAGGCTGCAGGGCAGTTCAATTGGTAATCATTATACTATGAAACATCTCACCTAGGTCGCCAAGTAATTTAATTGGTGATCACCATATTATAAAATATCTGATTGAACTACCCAGAATTCAGGGAGTTTAATTGGCCATCACCATATTATGTAGTATTGTAAATCATAATCTATTAATTTCTCATATTCAAAAATAACTGAGAAAGACATGTAAATCATGATTCTATTGATTTCTCATATTCCAGAAATAAAAAGTTGCATTTCAATTACACAGCC

Fln Alignment:

Contig14340___RDSDEIINRDQCRNTLIQRIVNQTFASTAHLANLLPTGTVLAFQVLSPLFSNNGHCDTATRVMTQILVFLCGISCFLVSFTDSFRAPDGNIYYGIATPRGLWTFDYVGSGNQALEQGKYRLRFVDFAHAFMSVMVFSAIALSDQNVVNCFYPAAQGETKEILDALPVGIGAISSMLFIAFPTTRHGIGFPVTA
B8LMJ7_______________KESEE--NEEKTREGLVQKALNQSLASTAHLANLLPTGTVLAFQILCPIFSNSGHCDQVSAFMTECLLVLCALSCFFISFTDSFQGSDGKLHYGLATPKGLWTFENLSEA--IPDAGRYQVRILDFVHAFLSVLVFAAIALLNDNVVKCLYPAPDYQTKEVLDVLPVGIGVFCSLLFVVFPTTRHGIGYPVSS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
527	25			75	0.996473
529		25	75		0.996473
533		25		75	0.996473
534			25	75	0.996473
536	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain