SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14331

Length: 497 nt

UniGene Fasta

>sp_v3.0_unigene14331
AGTTAGCAGTATGTCTCAGGTGATGGAACAGCATCATCTGAGACAAACAGCCCCAGAACCTTCACTCGAATAAATTCTCCAATAAGTTCCACAGTTAGCAGTATGAACAGTTTGCAGAAGACTGTTAGAGATGCATATCGAAGTCGGACTCCATATGGAAGCCCACCTCGACATGGATTGGAAAAGGGTCTTTCTGAAAGTCTAATCTATGCTACACCATCAAAAGTTTTTTTGCAGTCTGATTCTATTGGAGGTTATCTTCATTCATCATCTTCAGAAAGCCGCCAAGGCAGCATAAATGGTCATGCGAAGGTTACAACAATGGATACTTTTAGAGTCAGTCTATCAAGTGCTGTAAGCACTTCTAGCCAAGGTTCAGGCCAAGATGATGTTGATTCAATGGGAGATGTCTTCATTTGGGGAGAAGGGACTGGGGATGGTGTATTGGGAGGTGGCATGTGTAGGGCTGGAAATGAGGCTGGTTCTAAGATGGATTC

Ace file of the UniGene sp_v3.0_unigene14331

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya).	-	-	0.0	56%
Sma3	Ran GTPase binding protein, putative	-	-	4.535e-07	-

Source	Gene names
Sma3	At5g12350; At5g19420; GSVIVT00022255001; GSVIVT00030935001; OJ1354_D07.10; Os01g0952300; Os05g0384800; OsI_05225; OsI_19792; OsJ_04782; OsJ_18386; P0431G06.5; POPTRDRAFT_1087666; POPTRDRAFT_547820; POPTRDRAFT_555037; POPTRDRAFT_829697; RCOM_0833820; RCOM_

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Brevis radix-like domain	IPR013591	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G12350.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain chr5:3995789-4000545 FORWARD LENGTH=1075	8.0e-20	53%
RefSeq	Arabidopsis thaliana	NP_568268.3	Regulator of chromosome condensation-like protein with FYVE zinc finger domain-containing protein [Arabidopsis thaliana]	1.0e-19	53%
RefSeq	Populus trichocarpa	XP_002298476.1	predicted protein [Populus trichocarpa]	9.0e-23	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1HJX4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 791 aas, your sequence is shorter than subject: 165 - 1090

Fln protein: S*QYVSGDGTASSETNSPRTFTRINSPISSTVSSMNSLQKTVRDAYRSRTPYGSPPRHGLEKGLSESLIYATPSKVFLQSDSIGGYLHSSSSESRQGSINGHAKVTTMDTFRVSLSSAVSTSSQGSGQDDVDSMGDVFIWGEGTGDGVLGGGMCRAGNEAGSKMD

Protein Length: 166

Fln nts: AGTTAGCAGTATGTCTCAGGTGATGGAACAGCATCATCTGAGACAAACAGCCCCAGAACCTTCACTCGAATAAATTCTCCAATAAGTTCCACAGTTAGCAGTATGAACAGTTTGCAGAAGACTGTTAGAGATGCATATCGAAGTCGGACTCCATATGGAAGCCCACCTCGACATGGATTGGAAAAGGGTCTTTCTGAAAGTCTAATCTATGCTACACCATCAAAAGTTTTTTTGCAGTCTGATTCTATTGGAGGTTATCTTCATTCATCATCTTCAGAAAGCCGCCAAGGCAGCATAAATGGTCATGCGAAGGTTACAACAATGGATACTTTTAGAGTCAGTCTATCAAGTGCTGTAAGCACTTCTAGCCAAGGTTCAGGCCAAGATGATGTTGATTCAATGGGAGATGTCTTCATTTGGGGAGAAGGGACTGGGGATGGTGTATTGGGAGGTGGCATGTGTAGGGCTGGAAATGAGGCTGGTTCTAAGATGGATTC

Fln Alignment:

Contig14331___SSETNSPRTFTRINSPISSTVSSMNSLQKTVRDAYRSRTPYGSPPRHGLEKGLSESLIYATPSKVFLQSDSIGGYLHSSSSESRQGSINGHAKVTTMDTFRVXXXXXXXXXXXXXXXXXXXXXXXXFIWXXXXXXXXXXXXMCRAGNEAGSKMD
I1HJX4_______________SSGTTSPRTYTRRSSPLSSPFSSNDSVHKDGAENYRLRSPYGSPPKVGLEKAFSDIVSYTAPPRPFFPSDSNVGSVHSVSS-GHSDNTNGHSRGLPMDNFRVSLSSAVSSSSHGSGHDDGDALGDVFMWGEGTGEGILGGGNSRFGNSSGAKMD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain