SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14319

Length: 1433 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14319

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative alpha-xylosidase n=1 Tax=Pinus pinaster RepID=Q8VWV9_PINPS	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Alpha-glucosidase	-	-	6.859e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:3.2.1.2-	-	5.281e-35	-

Source	Gene names
Sma3	AGL1; AGL97; Agl2; Aglu1; At1g68560; At5g11720; B1153E06.13-1; B1153E06.2; CHLREDRAFT_196947; F16L2_150; F24J5.20; GSVIVT00030331001; GSVIVT00035203001; LOC_Os06g46284; Os01g0130400; Os06g0675700; Os06g0676700; OsI_00249; OsI_24141; OsI_24144; OsI_24149;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	alpha-glucosidase activity	GO:0004558	Molecular Function	-
Sma3	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	xylan catabolic process	GO:0045493	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 31	IPR000322	-	0.0	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G11720.1	Glycosyl hydrolases family 31 protein chr5:3776840-3780025 FORWARD LENGTH=902	72%
RefSeq	Arabidopsis thaliana	NP_196733.1	alpha-glucosidase [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002317679.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKI6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 213 aas, putative chimeric sequence, your sequence is shorter than subject: 129 - 908

Fln protein: WVLSMLSFGLFGVPMVGADICGFSKDTTEELCNRWIQLGSFYPFARDHSEKGTKHQELYLWKSVTMSARKALGLRYRLLPYIYTLAFEAHTKGSPIARPLFFTFPEDPNTLGISTQFLLGKAVLVSLF*

Protein Length: 130

Fln nts: ATGGGTACTTTCAATGCTGAGTTTTGGATTGTTTGGAGTCCCAATGGTAGGTGCTGATATTTGTGGATTTTCAAAAGACACAACCGAAGAGCTTTGCAATAGGTGGATTCAATTAGGTTCCTTTTATCCTTTTGCTAGAGATCACTCAGAGAAGGGAACAAAGCACCAAGAGCTTTACCTGTGGAAATCAGTGACAATGTCTGCGAGGAAAGCATTAGGTCTGAGATACAGGCTTCTTCCATATATCTACACATTGGCATTTGAAGCTCACACTAAAGGATCTCCCATTGCAAGGCCTCTGTTCTTTACATTCCCTGAGGATCCTAATACACTGGGAATCAGCACCCAGTTTCTATTGGGTAAAGCGGTCTTGGTCTCCCTGTTTTAA___AGCAAGGAGCAAGTACTGTGGATGCTTATTTTCCAAAGGGAACTTGGTACAATTTGTACAATGTATCAGAGTCAATAACAGTTGAGAGTGGCACATATGTTAGTCTTCTTGCTCCACTAGATACCATCAATGTCCATGTATTAGAGGGGACTATTTTGCCGATGCAAGAAATGGGTATGACAACTAGGGAAGCCAGAAGAAGCCCATTTAGTCTGGTGGTTGCCTTGGGTGGTAGGAAGGAAGCATATGGGGACCTATATGTGGACAATGGAGAGGATTTGGAAATGGTAATAAAGCATGGCAAGTCAAGTTATATAGAGTTTTACGCAGATATTGTAGAGCAAGGAGTGAGACTGACATCAGAAGTCCAAATGGGGGAATATGCAATTGGGGAAGGATGGCTTCTGGAGAAGATTACAGTTTTGGGAACTACCACTGCTGTTCGTTCTCATTATGCTAATTCATACATGAAATTGGAGGCAACCAGGGATGAAATGATTCTGGATGTTTCAGCATCATTCTCTATGAAGAGAATCAAAACTGATTTTAGACCTGAAATGGATCGTTATAATAGCCTTGAGGTTGATGTTGTTTTAGTGATTTCAAATCTGTCTCTTTCAATCGGCAAGAACTTTGAGCTTGTTATACCGTGGGAGAAATGATTGGGTAGTGCTGTGCGTTCACATGGTAAAATTGGACGCAAGGACGAGTTTCATCAATTGCCACACTTGTGTGTGGTGTGGTGTGTACTTCTGCATTAACAGGGTAACCTACTACATGGGTAGGACTCCTTGAACTTTGACTCTCCACCTTAAATGTTGAATAACGTTCCGAACTAGTCATGGGACACTCCCTGAATATTAAAGTATAAATTTATATGGGTCTGTGCCAATAAAAAAACCTGGCCCTCAAGATCAACGATATAGAATAATCCCCATCTACGTTTTCCCATGGTGGCATTATGATATACATTAAACTGAACAAACAACCACATCTCCGATAATTAGGCTAAAATGTTGTGAATTAATTATAAGAGTGAAATCAT

Fln Alignment:

Contig14319___VLSMLSFGLFGVPMVGADICGFSKDTTEELCNRWIQLGSFYPFARDHSEKGTKHQELYLWKSVTMSARKALGLRYRLLPYIYTLAFEAHTKGSPIARPLFFTFPEDPNTLGISTQFLLGKAVLVS
B8LKI6_______________ISTILNFGMFGMPMVGADICGFYPDTTEELCGRWIQLGAFYPFSRDHSNLHSKRQELYLWDSVAKSARKALGLRYRLLPYLYTLNYDAHTTGAPIARPLFFSFPQDPETYGVTKQFLLGPGVLVS

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
101	66		33		0.997452
197	66			33	0.997452
244	33			66	0.997452
247		66	33		0.997452
601		33		66	0.997452
684	85		14		0.993533
686		85	14		0.993533
713		14		85	0.993533
856	14	85			0.993533
860	85			14	0.993533
1004		80		20	0.995493
1124		11	88		0.923564
1134	11		88		0.923564
1135		11		88	0.923564
1136	11		88		0.923564
1138	88			11	0.923564
1168	16			83	0.994512
1169		16	83		0.994512
1172			16	83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1121	1135	GTGTG GTGTG GTGTG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain