SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14289

Length: 1248 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14289

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 22, putative n=2 Tax=Ricinus communis RepID=B9SJQ9_RICCO	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Xyloglucan endotransglycosylase	-	-	6.514e-36	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	0.0	-

Source	Gene names
Sma3	19-1-5; AoXET1; AoXET2; At1g65310; At2g06850; At2g18800; At3g23730; At4g03210; At4g14130; At4g25810; At4g25820; At4g30270; At4g30280; At4g30290; At5g13870; At5g48070; At5g57530; At5g57540; At5g57550; At5g57560; EXGT; EXGT-A1; EXGT-A4; EXGT-A5; EXGT-A6; EX

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to mechanical stimulus	GO:0009612	Biological Process	-
Sma3	response to low light intensity stimulus	GO:0009645	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	cell wall modification	GO:0042545	Biological Process	-
Sma3	primary root development	GO:0080022	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G23730.1	XTH16 xyloglucan endotransglucosylase/hydrolase 16 chr3:8550222-8551248 FORWARD LENGTH=291	56%
RefSeq	Arabidopsis thaliana	NP_566738.1	xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002301752.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLP1

Fln msg:

Fln protein: MYSNNSLKIYFPLMARYFTAAVLLFRAIVVVANFYNDFDITWSNDHAKILDNGREIQLSLDKESGSAFQSKKEYLFGKYHMHIKLIPNNSAGTVTSFYLSSQGSNHDEIDLEFLGNISGEPYILHTNIYTDGFGNREQQFYLWFDPRATFHTYSVVWSPQLLILLVDNTPIRVFPNNEHLGVPYPNKQPMGVYSSVWNADNWATRGGLVKTDWSKAPFVASFRNFNVLQGSSNATAQNISCCASTSTSNYTQTSGNQVTQCLNPTQQQRLRWVQKHCMIYNYCNDAKRFPQGFPPECRST*

Protein Length: 302

Fln nts: GCTATTACTATTTTTCTCTGCACAATCTACTCTTTTCTCGACCCAAAAAAAATGACCCCTGAAGCAGTTTTCAGATATACATAGTTTTGTCCGTAATTAGACCACGAAATCTATACATCC_-_ATGTATTCAAATAATTCACTCAAGATTTATTTTCCCCTGATGGCCAGATATTTCACAGCTGCTGTGCTTTTGTTTAGAGCAATAGTCGTTGTAGCGAATTTCTACAATGACTTTGATATCACATGGTCTAACGATCACGCTAAGATACTTGACAATGGTCGCGAGATACAGCTCTCTCTAGACAAGGAATCAGGTTCTGCATTTCAATCCAAGAAAGAATATCTATTTGGAAAATACCATATGCATATCAAGTTGATACCCAACAACTCTGCTGGCACTGTCACTAGCTTCTATCTTTCTTCTCAGGGTTCTAATCATGACGAAATTGACTTGGAATTCTTGGGAAATATTTCTGGCGAACCCTATATTTTGCATACCAATATCTACACTGATGGATTTGGCAACAGAGAGCAACAATTCTACTTGTGGTTCGATCCTAGAGCAACTTTTCACACATATTCTGTTGTTTGGAGCCCACAACTATTAATATTATTAGTTGACAATACTCCAATTAGAGTATTTCCCAACAACGAGCACTTGGGTGTACCTTATCCTAACAAACAACCAATGGGAGTTTACTCCAGCGTTTGGAATGCAGACAATTGGGCTACCAGAGGTGGTTTGGTGAAGACTGACTGGAGTAAAGCTCCCTTCGTAGCATCGTTCCGCAACTTCAATGTGCTGCAGGGTTCAAGTAACGCGACTGCTCAAAATATTTCCTGTTGCGCCTCTACTTCAACCTCTAATTATACTCAGACAAGTGGGAACCAAGTCACCCAGTGTTTAAATCCGACCCAACAACAAAGGCTTCGTTGGGTTCAAAAACATTGTATGATTTACAATTACTGTAATGATGCTAAGAGATTTCCACAGGGATTTCCTCCCGAATGCAGGAGCACATAA___GATCTGATCGTTAGGTTCGTCATAACATAAAGATTTAGAGAAGCCATGAATGCTCATTAGATAACATAAGTTAATGATTCAAAGAAGTCATTAAGCCTTCGTGATGTATGTTTTTCAGTTTGTACTAGACAGGGAGATGGGTATGCTATCATCTTCCAAATGGCCTTTTATAAATGATTATATACTTTGCTTCTAAATGAAAACATCAATACAAGCCATAGCTAG

Fln Alignment:

Contig14289___IYFPLMARYFTAAVLLFRAIVVVANFYNDFDITWSNDHAKILDNGREIQLSLDKESGSAFQSKKEYLFGKYHMHIKLIPNNSAGTVTSFYLSSQGSNHDEIDLEFLGNISGEPYILHTNIYTDGFGNREQQFYLWFDPRATFHTYSVVWSPQLLILLVDNTPIRVFPNNE-HLG-----VPYPNKQPMGVYSSVWNADNWATRGGLVKTDWSKAPFVASFRNFNVLQGSSNATAQNISCCASTSTSNYTQTSGNQVTQCLNPTQQQRLRWVQKHCMIYNYCNDAKRFPQGFPPECR
A9NLP1_______________MYTPFLLLFL---LLTFSAALVSANFYSDFDITWGDDRAKILDNGQQLQLTLDRTSGCGIQSKQEYLFAKIDMQIKLIPGNSAGTVTTYYLSSQGPKHDEIDFEFLGNLSGDPYVMHTNVFAQGLGNREQQFYLWFDPTLDFHTYSVLWTPNQIIFSVDGTPVRVFKNRETELGKVDTNYHYPKSQAMRIYSTLWNADDWATRGGLVKTDWTKSPFAASFRNFNAVTSSSNSTAE----------------------EALDSNQERSLQWVQKNYMIYDYCADTKRFPQGLPPECK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
357	88			11	0.923564
358		88		11	0.923564
359		88	11		0.923564
361	11			88	0.923564
386	55		44		1.0
580		16		83	0.994512
1007	36	63			1.0
1151		16		83	0.994512
1171	16	83			0.994512
1173	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain