SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14246

Length: 1129 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14246

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ran GTPase binding protein, putative n=1 Tax=Ricinus communis RepID=B9S5S9_RICCO	-	-	1.0e-39	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%

Source	Gene names
Sma3	POPTRDRAFT_710838;

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Brevis radix-like domain	IPR013591	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN54

Fln msg: your sequence is shorter than subject: 311 - 342

Fln protein: MLACIACSKRLNDGSQDASDEDAFGTPRSLVSRNAIENLTAQKDTPLQLSGANRPSAVSNLNREEQLQRSIDSEAGSESRTPLEESSSSTATWCIMDASSKGDSLSDRLCTNTPPTGTPIFHTSSGSVETMMDEKDDEETKEWISQVEPGVIITLVSLKGGRNELKRIRFSREIFNHEQAQGWWAENCDKIMELYNVHAHTKDKPAAVSNPPRSEDERDSKIRAESGTDSPVTPPMQNKTLLPRGSQASETSSFRDTDRSDHLQSKDNSSKQGHKSVEEDIPGVYVTISCFPTGSRQIKRVKFRYYFLYL*

Protein Length: 312

Fln nts: AGTGGCTGGTCATCCAGAAAGGCAATACTGCTTCTCTAGTGATCCGTACC_-_ATGCTGGCGTGCATCGCGTGTTCGAAGAGGCTAAATGATGGTTCGCAAGATGCCTCAGATGAGGATGCCTTTGGCACTCCAAGATCTCTAGTCTCCAGGAACGCCATTGAGAATCTTACTGCTCAGAAGGATACGCCATTACAATTATCCGGAGCAAATAGGCCTTCCGCCGTATCCAACCTTAACCGCGAGGAACAGTTGCAAAGGAGCATAGATTCAGAAGCAGGATCCGAAAGCAGAACACCGCTTGAAGAAAGTTCCAGTTCCACAGCGACCTGGTGCATTATGGATGCTTCTAGTAAAGGCGATTCTCTAAGCGATAGGCTGTGCACGAATACCCCACCAACCGGCACACCGATTTTCCATACCTCCTCTGGATCAGTCGAAACAATGATGGACGAAAAGGACGACGAGGAAACCAAGGAGTGGATATCACAGGTCGAACCTGGCGTCATCATTACTCTAGTTTCTCTCAAGGGAGGACGAAATGAGCTTAAGCGGATCCGATTCAGCCGAGAAATATTCAACCACGAGCAAGCTCAGGGTTGGTGGGCTGAAAATTGTGATAAAATCATGGAGCTTTACAATGTCCATGCGCATACCAAGGACAAGCCTGCTGCGGTTTCGAATCCTCCGAGATCTGAGGACGAGAGAGATTCCAAGATTCGGGCCGAATCCGGAACTGACAGTCCTGTCACGCCACCGATGCAAAACAAGACTCTTCTTCCAAGAGGTTCACAGGCATCAGAAACGAGTTCTTTTCGCGATACTGATCGGTCGGACCACTTGCAGAGTAAAGACAATTCTAGTAAACAAGGGCATAAATCGGTTGAAGAAGATATACCCGGTGTCTATGTTACCATTAGCTGTTTCCCTACAGGTTCAAGACAAATTAAGCGCGTCAAATTCCGATATTACTTTCTTTACCTGTGA___GGATGATAATGCATTCACTTTAGAGGAGTTTGATTGTGATGGCGACAATGCATTTCAGCCGCGAGAAGTGCAGTGAGACGCAAGCGATTTCTTACCTGTGAGGATGATAATGCATTCACTTATGAGGAGTTTAATTGTGATGACGA

Fln Alignment:

Contig14246___MLACIACSKRLNDGSQDASDEDAFGTPRSLVSRNAIENLTAQ-KDTPLQLSGANR---PSAVSNLNREEQLQRSIDSEAGSESRTPLEESSSSTATWCIMDASSKGDSLSDRLCTNTPPTGTPIFHTSSGSVXXXXXXXXXXXXXXWISQVEPGVIITLVSLKGGRNELKRIRFSREIFNHEQAQGWWAENCDKIMELYNVHAHTKDKPA-AVSNPPRSEDERDSKIRAESGTDSPVTPPMQNKTLLPRGSQASETSSFRDTDRSDHLQSKDNSSKQGHKS----VEEDIPGVYVTISCFPTGSRQIKRVKF
A9NN54_______________MLACIACSKRLNDGSLDAADEDGSGTPRSPASREAIKNLTSQIKDMALKLSGAHRHCRPFAVSNLSREGQLQRCTASEVGSENGTPRGGSSSSTPAWSIVSSSSKGHVLGDRLCANTSRIGTPMLHTSSGPVETTMEEVEEEESKEWISQVEPGVLITLVSVKGGGNELKRIRFSRELFNKWQAQRWWAENYDKVMELYNVHAHAKDDSAVAVPTPPRSEDERDSKMQ-ESGADSPVTPPIQNMSLLPRGLYASRTSSSHYADRSDDFQSSGNSSEQEQEQEQEWVEEDEPGVYVTIRCSPAGSREIRRVRF

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
469		90		10	0.90298
470		90	10		0.90298
471	90			10	0.90298
501	18		81		0.999994
593			83	16	0.994512
595		33	50	16	1.0
596	40		60		1.0
631	16	83			0.994512
632	16			83	0.994512
634			16	83	0.994512
635	83			16	0.994512
648	16		83		0.994512
650	83		16		0.994512
680	83	16			0.994512
708		25		75	0.996473
717			25	75	0.996473
736		33	66		1.0
747		66		33	1.0
754		66	33		1.0
781	60		40		1.0
809		60		40	1.0
835		50	50		1.0
879		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain