SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14229

Length: 1964 nt

UniGene Fasta

>sp_v3.0_unigene14229
GGAAAAGAGCCAGCCCAGTTTATTGCTCTTTTTCCTAACCTGGCCATTCTAAATGGTAAGATGAATATCGGCAAGATAAAAGACAATGTAGAGAATGATTCAATGGATGAGACAAATATGGGAGATTGTGTTGCACTTTTCAAAGTCTGTGGTACAGATCGTCACAACTGTAAAGCAATTCAAGTTGATCCGGTTGCGGCATCTTTGGATTCTACCTGTTGCTTCTTGTTGCAAACTGGGACATCACTTCTCATTTGGCATGGTAATTCTACAACAGTCGAGCAGCAAAAATCAGCTGCAACATTTGCAGAGTTCTTAAGACCTGCCATTAGTTTAAAAGCTGTAAAGGAAGGGACAGAACCAGCAACATTTTGGAATGTATTAGGTGAGAAGCAAAGCTATGTGAGTCAGAGGGGAGCACAAGAATCTGGTGGAGATCCTCACTTGTATGCTTGTGCATTTGAAAAAGGAATATTGAAGCCTACTGAAGTCTTCAACTTTACTCAAGATGACCTGTTGACAGAGGATATCATGGTACTGGATACTCACAGCGAGGTTTTCGTTTGGATTGGTCAGCATGCAAATTCTAAGCTGAAGCAACAAAGTTTTGATATTGGACAGAAATATACAGAGCGTGCAGCAGTGTTTGAAGGGTTGTCTCTAGATACTCCGCTTTACATAGTTACTGAGGGAAATGAACCATCTTTCTTCACAAGATATTTTGCATGGGATTCTTCCAAGGCCGTGGTCCAGGGGAATTCATTTGAAAAGAAACTTGTGATTCTCCAAGGAAAGCCTATTCTAGCTGTTGAGAAATTAAAAGGCCGAGTACACAACATTAATGCTGCATCCAGTGAAAATACAAAACAGACACCTGAGAGTTTGAATGGTCTTCGAAAAGGTGGCTTAACTCGAAAATCTTCCGCTCTAGCTGCCTTGACTTCTGCTTTTACATCAAGTAACGGAGAAAAAGGTTCAAGTAAAGATGTGAAAGCGTCATCCAAACCTGCTTTGAATCAGTCCTCTCGGAGATCATCTGTTGGTTCAGCATTATCTACTGCCCTCAGTGTAGAAATCAAAAGCCATTCAGCTAAAGACTTAACCGTTCAATCTATTCCAGTTACTGATGCTGTAACAGTTTCAGATGCAACAAAGATTGAAACAAGCAATACAACAGATGCTGAAAGTGAGTTGCCTAAGCAAGATGAATCGGCCTCAGAAAATGATACGAAGTTAGAAGTGTCTGTGCCTGATAATAAAGGAGAGGAAATATCTAAAAACGTCAATATCGAGCCAGAGGAAAATGGATCTTGTAGCACTTACAGCTATGAACGCTTGATATCTAATTCCACAAACCCAGCACGAGGAATTGATCCCCGAAGAAGAGAGTCCTACTTAACAGCTGAGGACTTCTATAAGATATTTAACATGGATCAGAAACAATTCTATGAGCAAGCAAAGTGGAAGCAGCAAAGGCAAAAGAAGGCTGTTGATCTCTTTTAGGCGACTGCAGTTCATCACTTTATTCTACTGTCTCTCATTCTATCCTTAATCGAGAGTCTCTATGTGTTCGGTATTTCTCTAAGGGCATAATTTTGTAGTAGTCTGTAGGGTAGCATAGAGTCTGAATTTTAGGAGGTGAAAATTTGCCAAAGTAATAGTGAGGCTGATCGCTTTGTCAATTAATTTATTCAATTGTATTCTGGGTACCGTAGAAACCTAGAAAGGACCATGATTCTCTTATAAAAATTGTGTAGTTCTTTCCAATGTTTCATTTGATCTGCCAAAAGGAAGTTCTTCGTTGGTTGCCGCTGGAAAGTAAAACAGGATTTGTAGCAATTTGTGAATACATTATTTCATCATGTGAACCTCTGAGCAGTTACTGATCTGCCTTTTGCTGGTTAATAAGGTGATCTAAATGCTAGTGTCAATAGTTTATAAAGATATATCATTTGTAAAAAGTT

Ace file of the UniGene sp_v3.0_unigene14229

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Actin bundling protein ABP135 n=3 Tax=Lilium longiflorum RepID=Q9SQH4_LILLO	-	-	0.0	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	Gene names
Sma3	At2g41740; At3g57410; F28O9.260; GSVIVT00025610001; LOC_Os03g24220; Os03g0356700; OsI_11627; OsJ_10899; POPTRDRAFT_576360; POPTRDRAFT_793742; POPTRDRAFT_819056; T8H10.10; VLN2; VLN3; Y5-7; vln1; vln2;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	cytoskeleton organization	GO:0007010	Biological Process	-
Sma3	barbed-end actin filament capping	GO:0051016	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Villin headpiece	IPR003128	-	-
Sma3	Gelsolin	IPR007122	-	-
Sma3	Gelsolin domain	IPR007123	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL35

Fln msg: your sequence is shorter than subject: 501 - 610

Fln protein: GKEPAQFIALFPNLAILNGKMNIGKIKDNVENDSMDETNMGDCVALFKVCGTDRHNCKAIQVDPVAASLDSTCCFLLQTGTSLLIWHGNSTTVEQQKSAATFAEFLRPAISLKAVKEGTEPATFWNVLGEKQSYVSQRGAQESGGDPHLYACAFEKGILKPTEVFNFTQDDLLTEDIMVLDTHSEVFVWIGQHANSKLKQQSFDIGQKYTERAAVFEGLSLDTPLYIVTEGNEPSFFTRYFAWDSSKAVVQGNSFEKKLVILQGKPILAVEKLKGRVHNINAASSENTKQTPESLNGLRKGGLTRKSSALAALTSAFTSSNGEKGSSKDVKASSKPALNQSSRRSSVGSALSTALSVEIKSHSAKDLTVQSIPVTDAVTVSDATKIETSNTTDAESELPKQDESASENDTKLEVSVPDNKGEEISKNVNIEPEENGSCSTYSYERLISNSTNPARGIDPRRRESYLTAEDFYKIFNMDQKQFYEQAKWKQQRQKKAVDLF*

Protein Length: 502

Fln nts: GGAAAAGAGCCAGCCCAGTTTATTGCTCTTTTTCCTAACCTGGCCATTCTAAATGGTAAGATGAATATCGGCAAGATAAAAGACAATGTAGAGAATGATTCAATGGATGAGACAAATATGGGAGATTGTGTTGCACTTTTCAAAGTCTGTGGTACAGATCGTCACAACTGTAAAGCAATTCAAGTTGATCCGGTTGCGGCATCTTTGGATTCTACCTGTTGCTTCTTGTTGCAAACTGGGACATCACTTCTCATTTGGCATGGTAATTCTACAACAGTCGAGCAGCAAAAATCAGCTGCAACATTTGCAGAGTTCTTAAGACCTGCCATTAGTTTAAAAGCTGTAAAGGAAGGGACAGAACCAGCAACATTTTGGAATGTATTAGGTGAGAAGCAAAGCTATGTGAGTCAGAGGGGAGCACAAGAATCTGGTGGAGATCCTCACTTGTATGCTTGTGCATTTGAAAAAGGAATATTGAAGCCTACTGAAGTCTTCAACTTTACTCAAGATGACCTGTTGACAGAGGATATCATGGTACTGGATACTCACAGCGAGGTTTTCGTTTGGATTGGTCAGCATGCAAATTCTAAGCTGAAGCAACAAAGTTTTGATATTGGACAGAAATATACAGAGCGTGCAGCAGTGTTTGAAGGGTTGTCTCTAGATACTCCGCTTTACATAGTTACTGAGGGAAATGAACCATCTTTCTTCACAAGATATTTTGCATGGGATTCTTCCAAGGCCGTGGTCCAGGGGAATTCATTTGAAAAGAAACTTGTGATTCTCCAAGGAAAGCCTATTCTAGCTGTTGAGAAATTAAAAGGCCGAGTACACAACATTAATGCTGCATCCAGTGAAAATACAAAACAGACACCTGAGAGTTTGAATGGTCTTCGAAAAGGTGGCTTAACTCGAAAATCTTCCGCTCTAGCTGCCTTGACTTCTGCTTTTACATCAAGTAACGGAGAAAAAGGTTCAAGTAAAGATGTGAAAGCGTCATCCAAACCTGCTTTGAATCAGTCCTCTCGGAGATCATCTGTTGGTTCAGCATTATCTACTGCCCTCAGTGTAGAAATCAAAAGCCATTCAGCTAAAGACTTAACCGTTCAATCTATTCCAGTTACTGATGCTGTAACAGTTTCAGATGCAACAAAGATTGAAACAAGCAATACAACAGATGCTGAAAGTGAGTTGCCTAAGCAAGATGAATCGGCCTCAGAAAATGATACGAAGTTAGAAGTGTCTGTGCCTGATAATAAAGGAGAGGAAATATCTAAAAACGTCAATATCGAGCCAGAGGAAAATGGATCTTGTAGCACTTACAGCTATGAACGCTTGATATCTAATTCCACAAACCCAGCACGAGGAATTGATCCCCGAAGAAGAGAGTCCTACTTAACAGCTGAGGACTTCTATAAGATATTTAACATGGATCAGAAACAATTCTATGAGCAAGCAAAGTGGAAGCAGCAAAGGCAAAAGAAGGCTGTTGATCTCTTTTAG___GCGACTGCAGTTCATCACTTTATTCTACTGTCTCTCATTCTATCCTTAATCGAGAGTCTCTATGTGTTCGGTATTTCTCTAAGGGCATAATTTTGTAGTAGTCTGTAGGGTAGCATAGAGTCTGAATTTTAGGAGGTGAAAATTTGCCAAAGTAATAGTGAGGCTGATCGCTTTGTCAATTAATTTATTCAATTGTATTCTGGGTACCGTAGAAACCTAGAAAGGACCATGATTCTCTTATAAAAATTGTGTAGTTCTTTCCAATGTTTCATTTGATCTGCCAAAAGGAAGTTCTTCGTTGGTTGCCGCTGGAAAGTAAAACAGGATTTGTAGCAATTTGTGAATACATTATTTCATCATGTGAACCTCTGAGCAGTTACTGATCTGCCTTTTGCTGGTTAATAAGGTGATCTAAATGCTAGTGTCAATAGTTTATAAAGATATATCATTTGTAAAAAGTT

Fln Alignment:

Contig14229___GKEPAQFIALFPNLAILNGKMNIGKIKDNVENDSMDETNMGDCVALFKVCGTDRHNCKAIQVDPVAASLDSTCCFLLQTGTSLLIWHGNSTTVEQQKSAATFAEFLRPAISLKAVKEGT
B8LL35_______________GKEPPQFIGLFPNMAILKGGLSAGYKKYITEKGINDETYNGDGIALIQVCGTGPHNSKAIQVDPVAESLNSCDCFLLQTGTSLFAWHGNSSALEQQLSVARIAEFLKPGTLLKAVKEGT

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
197		85		14	0.993533
319	75		25		0.996473
420	66		33		0.997452
585	75		25		0.996473
797	14	85			0.993533
964	85		14		0.993533
1011	12		87		0.992554
1373	16			83	0.994512
1374		16	83		0.994512
1377		83		16	0.994512
1432		25		75	0.996473
1519	33	66			1.0
1544		16		83	0.994512
1675	20		80		0.995493
1774		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain