SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene14227

Length: 1527 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene14227

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cyclin-dependent kinase B1-1 n=2 Tax=Oryza sativa RepID=CKB11_ORYSJ	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Chromosome chr8 scaffold_68, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00033623001;

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G38620.2	" CDKB1;2 cyclin-dependent kinase B1;2 chr2:16152551-16153866 FORWARD LENGTH=311"	75%
RefSeq	Arabidopsis thaliana	NP_001031507.1	cyclin-dependent kinase B1-2 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002336374.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9Y6

Fln msg:

Fln protein: MDKYEKLEKVGEGTYGKVYKARDKMTGQLVALKKTRLEMDEEGVPPSSLREISLLQMLSQSIYVVRLLCVEHVTKKGKPLLYLVFEYLDTDLKKFIDYRRSVNAGPLPQNVIQSFMYQLLKGVAHCHSHGVLHRDLKPQNLLVDKSKGLLKVGDLGLGRAFTVPLKCYTHEVVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMVRRQPLFPGDCEIQQLLHIFTLLGTPTEEMWPGVKRLRDWHEYPQWKPENLARAVPNLSPTGLDLISKMLQCDPAKRISAKAAMNHPYFDDLDKSQF*

Protein Length: 304

Fln nts: AAACAATGCTAGCTGTTGGATGGAGATTGGGTATTTAAATATGAGCCGTCAGATGGGATGGAAAACCACAGCAACGGTTCCATTGAGTTTATTCAGATCCATTCCATTGTCTTAATTTTTTGGGTCAGTGAGGTGGGCAGGGTGTGTATTGTGGGCTCGTTGGTGGGGTGAATTGATTACAGAGGAAGCCCAGGAAGGCACTGGAAGCATTTCAATATAAATAATCTCTGCAATTGATTGAATCGGCCCGCC_-_ATGGACAAGTATGAAAAGCTTGAGAAGGTCGGGGAGGGCACCTATGGGAAGGTGTACAAGGCAAGAGACAAGATGACTGGACAGCTCGTTGCTCTCAAGAAGACTCGCCTTGAGATGGACGAGGAAGGCGTCCCACCCAGTTCTCTTCGTGAAATATCCCTCCTGCAAATGTTGTCTCAGAGCATATATGTTGTTCGGTTGCTTTGTGTGGAGCATGTGACGAAGAAGGGAAAACCACTGCTTTACCTAGTCTTCGAGTACCTTGATACAGATCTGAAGAAATTCATCGACTATCGACGCAGTGTCAATGCTGGTCCTCTGCCGCAAAATGTTATTCAGAGTTTCATGTATCAACTGTTGAAAGGTGTAGCTCATTGTCACAGCCATGGAGTGTTGCACAGGGATTTAAAGCCACAGAATCTATTGGTCGATAAAAGCAAAGGCTTACTTAAAGTTGGAGATCTGGGACTTGGGAGGGCTTTTACTGTGCCTTTAAAGTGTTACACCCATGAGGTTGTCACCCTATGGTACAGAGCTCCAGAGGTGTTGTTGGGATCAACTCACTATTCCACACCTGTGGACATTTGGTCTGTAGGATGTATTTTTGCTGAAATGGTGAGAAGACAACCACTTTTCCCTGGGGATTGTGAAATACAACAGCTGCTTCATATCTTCACGTTGCTTGGAACCCCAACTGAGGAAATGTGGCCTGGAGTAAAACGTCTAAGGGACTGGCATGAGTATCCTCAGTGGAAACCTGAGAACCTTGCTCGGGCAGTTCCAAATCTATCACCAACTGGTCTCGATCTTATCAGTAAAATGCTGCAGTGCGATCCTGCAAAGAGGATTTCAGCAAAGGCAGCTATGAATCACCCTTACTTTGATGATCTGGACAAGTCTCAATTCTGA___AGTATTCAAATTTCACTATTTATGGGTGTTCAAGGATGCCAGAGACTTTTAAGTGATCATATTTATGGAACTGTTCCTGCCAATTCGGAGGTTTAAGCAGCCACTGTAAAATGGTTTTTCTTGCTATAGATTGCAAGTCTCATCTATTGTTTGCAAAAGCAAACAGAAATTCCAATTTTTGCAGTTGATTCTACTCAGCCTTTCATTCATTTGTTCATTAAGTGGTACTGGCAGAGGACATGTCTATTTATACAAGCAAATGGTTCTATTGTCTGTTTAAAACAGTTCTATTTAACTCGATCAAAATCTGACTTATTTTGAAATTCTTCTATCTTTTTCGAAGCGTTTCCTGCAATGCCAGTATTA

Fln Alignment:

Contig14227___MDKYEKLEKVGEGTYGKVYKARDKMTGQLVALKKTRLEMDEEGVPPSSLREISLLQMLSQSIYVVRLLCVEHVTKKGKPLLYLVFEYLDTDLKKFIDYRRSVNAGPLPQNVIQSFMYQLLKGVAHCHSHGVLHRDLKPQNLLVDXXXXXXXXXXXXXXRAFTVPLKCYTHEVVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMVRRQPLFPGDCEIQQLLHIFTLLGTPTEEMWPGVKRLRDWHEYPQWKPENLARAVPNLSPTGLDLIS
D5A9Y6_______________MDKYEKLEKVGEGTYGKVYKARDKITGQLVALKKTRLEMDEEGVPPSSLREISLLQMLSQSIYVVRLLCVEHVSKKGKPLLYLVFEYLDTDLKKFIDSRRSVNAGPLPPNVVQSFMYQLCKGVAHCHSHGVLHRDLKPQNLLVDKSKGLLKVGDLGLGRAFTVPLKCYTHEVVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMVRRQPLFPGDCEIQQLLHIFTLLGTPNEEMWPGVKRLRDWHEYPQWKPENLARAVPNLSPSGLDLLS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
790	71		28		1.0
1365		81	18		0.999994
1426			11	88	0.923564
1446	83			16	0.994512
1466		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain