SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13737

Length: 3300 nt

UniGene Fasta

>sp_v3.0_unigene13737
ATGGGGACATCGTATTGATTTGTTGTTATCGTTCTGCGAGTACTGCGACTCTTTTTTACCTTCTTTGCGGCCCTCTGTCGGGATCGATACCGACTCTTTATCCTTCTAAACCCTCGCCTTCTATTCTTCCACCTCTTTCGCCTTTCTCACTTCTGTTGGAAACTTCGAGGAGGTTTTGCTCGGGATCGATGCTTGTGACTTGCGGGGGCTCGATCGCGGAACCTGTTACGTGCGGCTTCATCTTCAAGCAATTGCTAAAGTTTCTTGAGTCACAAGGGTTGGAAGGCTTCCATTTGTTGTCGACTTGCACCATGTGTTATGGTTATGACCAGTTCCTATCGGAGTTTCTTTCCCCATAAAAATGACCAGGACAGGCTACATCAGATATGATGGACACCAAGGATAAAAAATTGAGGGAACAGTTTTCTGCAATTCCAACTCCTGATGAGTTGTCTGCGTTAAGCCCCGAAAGTGTTAGAGCAGATGCAATTCTTGTAGATGCTGAGAAGGATAAGAGAGTAGCAAAATTGAAGCAATTTACAATCGCATTAGTGAAGGGTTTGAGTTCAAATCCGGCATCAATGATTAAGAAAATCGCTGAAGTGGTTTGTGAGTTTTATGGGGGACCTCTTTGTGATGCAATACCCGCTAAGAATTCAGCTGAAGAGACATCCTTGGCAGACAACCAGGGACTGCAGCTCTTAGGGCAGATTAAAAATGGGTTATGCCGCCCACGGGCAATTTTATTCAAAGTCCTTGCAGATGCTGTGGGACTCAGAAGTAAACTTCTAGTGGGCCTACAACTGTATGATAGGGGAATTGCATATGCAGATGCTTACAAACACATGTCACTGGTAGTTGGATTAAATTCCACGGAGCTGTTAGTTGATGTCATGCGGTCCCCTGGCCAGTTAATACCCTTCTCAATGAAAGCTCTTATCATGTACCATGTTTCTGGGACTGGGGAAAGTGATTCTGCTGAGAATGATTCGTGCGACTCTCCTCTAGAGCCAAATAGTCCAATGTTTGGATTTTCAGATAAAATGGGCAGTGAAAGCCCAGAGCAAGAAGAACATAGCCCACGATATTTATATTTAAGGAAAGGGGAGAATATTTCTACACAAGCAGGTCCATCATTGCCAAACATAAAGCTAAGGCCAGCTGCACGCATTGAGGGGAAATTAAGTCCATCCCGAAGTGAGCCAGATATTGCAAATAGTTTCTGGCGACGTGGCCGCAGGAAAGGCATTGTTGAGCAGCGCACAGCTAGTTCCAGTCCTGAACACCCTTTGCTGAGGCTTTGTGGTCGTTCTATGCTTAGTGGGCACAGACATTACTTTTGGAGAAGATGTTGATTCTGTCAGCGCATCAAGTCCGGACCAGTCTCCACAACATATTGTTTCTGTACGAAGGACTTCGACAGTGGCTAGGCGGAATTCAGTTTACTCTCCCCACAGTAGTGGCGGGATTGAAAGCCCAGATCAGTCTCCGCAACATATTGTTGCTGTAGGAAGGACTTCGACAGTGGCTAGGCGGAATTCAGTTTACTCTCCCCACAGTAGTGGTGGGAATGAAAGGAGAAGAGCAGCAAACCATGGCACATGGTTTGGTGGAGATTTTACTCGGTCAGATCATATTTCAAGTTTAGACCATCGTCGAATAAGGAGAAGAAGTATGAGCATTACACCAGAAATTGGTGATGATATTGTCAGAGCTGTTCGAGCGATGAATGAGGCAATGAAGCAAGAACGCCTTGTAAAAGATGAAGACCATTATGGTGGGGAAAAAAGCGCCACTGCTGATGAGAAAGAACAGGATGTTTCTGACAATCTTTCCAAATATGCAGCACATTTTGCAGTTGGAGATGAAGGAACCGATTCTAGAGGAAGGAAGCCAGAATCCAGCTCTTCAAAAGATCTTAACAAGACCTCTCAAAGCGGTCTTTCAGTACCTTCATGTCCACAAGAATTTCAAACGACAAGTTCTTCAAAATCAATTGAGATGATTAATTCATGGAATCGAGTGCTACAATCTTCAACTCATACATCCAAGCCTCTGTTACCATTCCCAGAATGGAATATCGATTTTTCTGAGTTGAAAATGGGTGTCCGTGTTGGTATTGGTTCCTTTGGAGAAGTTTTTCGAGGCATATGGAGAGGAACAGAAGTTGCTATTAAGGTCTTGCTTGAGCAAGATTTGACTGAGGAGAATATGGAAGACTTCTGCAATGAAATATCATTGCTAAGCCGCATGCGACATCCAAATGTGATCTTATTTCTTGGAGCCTGTACGAAGCCGCCTCATCTTTCAATGGTCACTGAATATATGGAAATGGGTTCTCTGTCTCACTTGATCCATACAAGTGGCCAAGGAAAGAAGCTCAGTTGGAGAAGAAGATTGAAGATGCTTCGTGATATTTGCAGGGGGATGATGTGCATACAGCGGATGAATATAGTGCATCGAGATCTGAAAAGCGCAAATTGTCTTGTTGACAAACATTGGACAGTTAAAATCTGTGACTTTGGTCTTTCCCGGATAATGACAGAGCTCCCCATAAAGGATTCAACCGCTGCTGGAACTCCTGAGTGGATGGCACCAGAACTTTTGCGCAATGAACCGTTTACAGACAAGTGTGATGTGTTCAGTCTTGGGGTGATAATCTGGGAATTGTATACCTTAAAACGTCCTTGGGAAGGTGTGAAACCAATGCAAGTGGTTTATTCTGTTGCACATGAAGGGGCACGGTTGGAGATACCAGAAGGCCCTATTGGCAAATTGATATCAGACTGCTGGGCTTATGCCGATGATAGGCCAAGTTATGAGGAGATTTTCGCCCGCCTACATGATTGTGAGAACTTTTTTGTAAGCTAAAGAGAATTTATATTGGCCATTGTACATACAAAAGGAGGAATGGACCCGTTAAAAGTTATCTGACCTAAAAATTCTCTCCTATATAAGGCCAGTTACAGAACAGATACCAGAAATTTTATGAAATGTATGATAACAAAAGTTTTTTGAGTAGCATGTTACTTCTACTGTAAAATCTAGTGTACCAATTCACGATATTTCACTTTTTTTAAGGTCTTGGCTTCCTTGTCTTCCAACCCCTTGCAGTTTCAAACGGTGGCCATGTGTTAGGGAGAAAAATTACAATAAATATGCTTTAAAGCATTTTGAGTTAACTTTCTGGGCTGCAAGGTTGTACCCAATCACATCTTTAATGATACTGTATCCTGCAATAAAATTTATGTAAATTAACATTTCAAATCCCCACGGTTGCCTATCATGCAGCTTCATCAC

Ace file of the UniGene sp_v3.0_unigene13737

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitogen activated protein kinase kinase kinase-like protein [Arabidopsis thaliana] ref\|NP_850718.1\| Mitogen activated protein kinase kinase kinase-like protein [Arabidopsis thaliana] gb\|AAK83572.1\| AT3g58640/F14P22_230 [Arabidopsis thaliana] gb\|AAM98106.1	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Map3k delta-1 protein kinase, putative	-	-	4.114e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	7.347e-12	-

Source	Gene names
Sma3	AT4g23050; AT4g24480; AT5G03730; At1g18160; At1g67890; At1g73660; At2g31000; At2g31010; At2g42630; At3g06630; At3g58640; At4g23050; At4g24480; At5g03730; At5g11850; At5g49470; B1131G07.13; CHLREDRAFT_102541; CHLREDRAFT_120324; CTR; CTR1; CTR2; CTR3; CTR4;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	gibberellin biosynthetic process	GO:0009686	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	negative regulation of ethylene mediated signaling pathway	GO:0010105	Biological Process	-
Sma3	sugar mediated signaling pathway	GO:0010182	Biological Process	-
Sma3	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3		IPR000173	-	-
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Alkaline phosphatase, active site	IPR018299	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G58640.1	Mitogen activated protein kinase kinase kinase-related chr3:21687153-21692675 REVERSE LENGTH=809	63%
RefSeq	Arabidopsis thaliana	NP_567072.1	Mitogen activated protein kinase kinase kinase-like protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002321072.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8V0

Fln msg: your sequence is longer than subject: 399 - 319

Fln protein: MSITPEIGDDIVRAVRAMNEAMKQERLVKDEDHYGGEKSATADEKEQDVSDNLSKYAAHFAVGDEGTDSRGRKPESSSSKDLNKTSQSGLSVPSCPQEFQTTSSSKSIEMINSWNRVLQSSTHTSKPLLPFPEWNIDFSELKMGVRVGIGSFGEVFRGIWRGTEVAIKVLLEQDLTEENMEDFCNEISLLSRMRHPNVILFLGACTKPPHLSMVTEYMEMGSLSHLIHTSGQGKKLSWRRRLKMLRDICRGMMCIQRMNIVHRDLKSANCLVDKHWTVKICDFGLSRIMTELPIKDSTAAGTPEWMAPELLRNEPFTDKCDVFSLGVIIWELYTLKRPWEGVKPMQVVYSVAHEGARLEIPEGPIGKLISDCWAYADDRPSYEEIFARLHDCENFFVS*

Protein Length: 400

Fln nts: ATGGGGACATCGTATTGATTTGTTGTTATCGTTCTGCGAGTACTGCGACTCTTTTTTACCTTCTTTGCGGCCCTCTGTCGGGATCGATACCGACTCTTTATCCTTCTAAACCCTCGCCTTCTATTCTTCCACCTCTTTCGCCTTTCTCACTTCTGTTGGAAACTTCGAGGAGGTTTTGCTCGGGATCGATGCTTGTGACTTGCGGGGGCTCGATCGCGGAACCTGTTACGTGCGGCTTCATCTTCAAGCAATTGCTAAAGTTTCTTGAGTCACAAGGGTTGGAAGGCTTCCATTTGTTGTCGACTTGCACCATGTGTTATGGTTATGACCAGTTCCTATCGGAGTTTCTTTCCCCATAAAAATGACCAGGACAGGCTACATCAGATATGATGGACACCAAGGATAAAAAATTGAGGGAACAGTTTTCTGCAATTCCAACTCCTGATGAGTTGTCTGCGTTAAGCCCCGAAAGTGTTAGAGCAGATGCAATTCTTGTAGATGCTGAGAAGGATAAGAGAGTAGCAAAATTGAAGCAATTTACAATCGCATTAGTGAAGGGTTTGAGTTCAAATCCGGCATCAATGATTAAGAAAATCGCTGAAGTGGTTTGTGAGTTTTATGGGGGACCTCTTTGTGATGCAATACCCGCTAAGAATTCAGCTGAAGAGACATCCTTGGCAGACAACCAGGGACTGCAGCTCTTAGGGCAGATTAAAAATGGGTTATGCCGCCCACGGGCAATTTTATTCAAAGTCCTTGCAGATGCTGTGGGACTCAGAAGTAAACTTCTAGTGGGCCTACAACTGTATGATAGGGGAATTGCATATGCAGATGCTTACAAACACATGTCACTGGTAGTTGGATTAAATTCCACGGAGCTGTTAGTTGATGTCATGCGGTCCCCTGGCCAGTTAATACCCTTCTCAATGAAAGCTCTTATCATGTACCATGTTTCTGGGACTGGGGAAAGTGATTCTGCTGAGAATGATTCGTGCGACTCTCCTCTAGAGCCAAATAGTCCAATGTTTGGATTTTCAGATAAAATGGGCAGTGAAAGCCCAGAGCAAGAAGAACATAGCCCACGATATTTATATTTAAGGAAAGGGGAGAATATTTCTACACAAGCAGGTCCATCATTGCCAAACATAAAGCTAAGGCCAGCTGCACGCATTGAGGGGAAATTAAGTCCATCCCGAAGTGAGCCAGATATTGCAAATAGTTTCTGGCGACGTGGCCGCAGGAAAGGCATTGTTGAGCAGCGCACAGCTAGTTCCAGTCCTGAACACCCTTTGCTGAGGCTTTGTGGTCGTTCTATGCTTAGTGGGCACAGACATTACTTTTGGAGAAGATGTTGATTCTGTCAGCGCATCAAGTCCGGACCAGTCTCCACAACATATTGTTTCTGTACGAAGGACTTCGACAGTGGCTAGGCGGAATTCAGTTTACTCTCCCCACAGTAGTGGCGGGATTGAAAGCCCAGATCAGTCTCCGCAACATATTGTTGCTGTAGGAAGGACTTCGACAGTGGCTAGGCGGAATTCAGTTTACTCTCCCCACAGTAGTGGTGGGAATGAAAGGAGAAGAGCAGCAAACCATGGCACATGGTTTGGTGGAGATTTTACTCGGTCAGATCATATTTCAAGTTTAGACCATCGTCGAATAAGGAGAAGAAGT_-_ATGAGCATTACACCAGAAATTGGTGATGATATTGTCAGAGCTGTTCGAGCGATGAATGAGGCAATGAAGCAAGAACGCCTTGTAAAAGATGAAGACCATTATGGTGGGGAAAAAAGCGCCACTGCTGATGAGAAAGAACAGGATGTTTCTGACAATCTTTCCAAATATGCAGCACATTTTGCAGTTGGAGATGAAGGAACCGATTCTAGAGGAAGGAAGCCAGAATCCAGCTCTTCAAAAGATCTTAACAAGACCTCTCAAAGCGGTCTTTCAGTACCTTCATGTCCACAAGAATTTCAAACGACAAGTTCTTCAAAATCAATTGAGATGATTAATTCATGGAATCGAGTGCTACAATCTTCAACTCATACATCCAAGCCTCTGTTACCATTCCCAGAATGGAATATCGATTTTTCTGAGTTGAAAATGGGTGTCCGTGTTGGTATTGGTTCCTTTGGAGAAGTTTTTCGAGGCATATGGAGAGGAACAGAAGTTGCTATTAAGGTCTTGCTTGAGCAAGATTTGACTGAGGAGAATATGGAAGACTTCTGCAATGAAATATCATTGCTAAGCCGCATGCGACATCCAAATGTGATCTTATTTCTTGGAGCCTGTACGAAGCCGCCTCATCTTTCAATGGTCACTGAATATATGGAAATGGGTTCTCTGTCTCACTTGATCCATACAAGTGGCCAAGGAAAGAAGCTCAGTTGGAGAAGAAGATTGAAGATGCTTCGTGATATTTGCAGGGGGATGATGTGCATACAGCGGATGAATATAGTGCATCGAGATCTGAAAAGCGCAAATTGTCTTGTTGACAAACATTGGACAGTTAAAATCTGTGACTTTGGTCTTTCCCGGATAATGACAGAGCTCCCCATAAAGGATTCAACCGCTGCTGGAACTCCTGAGTGGATGGCACCAGAACTTTTGCGCAATGAACCGTTTACAGACAAGTGTGATGTGTTCAGTCTTGGGGTGATAATCTGGGAATTGTATACCTTAAAACGTCCTTGGGAAGGTGTGAAACCAATGCAAGTGGTTTATTCTGTTGCACATGAAGGGGCACGGTTGGAGATACCAGAAGGCCCTATTGGCAAATTGATATCAGACTGCTGGGCTTATGCCGATGATAGGCCAAGTTATGAGGAGATTTTCGCCCGCCTACATGATTGTGAGAACTTTTTTGTAAGCTAA___AGAGAATTTATATTGGCCATTGTACATACAAAAGGAGGAATGGACCCGTTAAAAGTTATCTGACCTAAAAATTCTCTCCTATATAAGGCCAGTTACAGAACAGATACCAGAAATTTTATGAAATGTATGATAACAAAAGTTTTTTGAGTAGCATGTTACTTCTACTGTAAAATCTAGTGTACCAATTCACGATATTTCACTTTTTTTAAGGTCTTGGCTTCCTTGTCTTCCAACCCCTTGCAGTTTCAAACGGTGGCCATGTGTTAGGGAGAAAAATTACAATAAATATGCTTTAAAGCATTTTGAGTTAACTTTCTGGGCTGCAAGGTTGTACCCAATCACATCTTTAATGATACTGTATCCTGCAATAAAATTTATGTAAATTAACATTTCAAATCCCCACGGTTGCCTATCATGCAGCTTCATCAC

Fln Alignment:

Contig13737___IDFSELKMGVRVGIGSFGEVFRGIWRGTEVAIKVLLEQDLTEENMEDFCNEISLLSRMRHPNVILFLGACTKPPHLSMVTEYMEMGSLSHLIHTSGQGKKLSWRRRLKMLRDICRGMMCIQRMN--IVHRDLKSANCLVDKHWTVKICDFGLSRIMTELPIKDSTAAGTPEWMAPELLRNEPFTDKCDVFSLGVIIWELYTLKRPWEGVKPMQVVYSVAHEGARLEIPEG---PIGKLISDCWAY-ADDRPSYEEIFARL
D5A8V0_______________IPWSDLVLKERIGAGSFGTVHHADWHGSDVAVKILIEQDFHEERLKEFLREVAIMKRLRHPNVVLFMGAVLSRPNLSIVTEYLPRGSLYRLIHRPGTREILDERRRLRMALDVAKGMNHLHRLNPPIVHRDLKSPNLLVDKTWTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELITLQQPWSGLNAAQVVGAVGFQNRRLQIPKDVKPDIAAIIEACWANDSRKRPSFASIMELL

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
1211	20			80	0.995493
1214		80		20	0.995493
1257	20		80		0.995493
1339	40			60	1.0
1391		83		16	0.994512
1392	83		16		0.994512
1393	83		16		0.994512
1394		83	16		0.994512
1481			85	14	0.993533
1517			16	16	0.988813
1547	14			85	0.993533
1548		14		85	0.993533
1550		85		14	0.993533
1668	83			16	0.994512
1983	85		14		0.993533
2089			22	77	0.999999
2092		77		22	0.999999
2269			11	88	0.923564
2270			88	11	0.923564
2274			11	88	0.923564
2277	11			88	0.923564
2312	87		12		0.992554
2317	12			87	0.992554
2320		87		12	0.992554
2436			11	88	0.923564
2506		88		11	0.923564
2592	88		11		0.923564
2658	87		12		0.992554
2934	20			80	0.995493
2935			80	20	0.995493
2938	25	75			0.996473
2940	75			25	0.996473
2941	75			25	0.996473
2942	75	25			0.996473
2944	75			25	0.996473
2962	20	80			0.995493
2965			80	20	0.995493
3190	20			80	0.995493
3191		20		80	0.995493
3192	20	80			0.995493
3194			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain