SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13549

Length: 606 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene13549 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GAGA-binding transcriptional activator BBR/BPC6-like n=1 Tax=Vitis vinifera RepID=B2Z458_VITVI	-	-	8.00001e-41	56%
FL-Next	tr=GAGA-binding transcriptional activator; Pinus taeda (Loblolly pine).	-	-	0.0	98%
Sma3	GAGA-binding transcriptional activator	-	-	4.2039e-45	-

Source	Gene names
Sma3	AT2G01930; AT2G21240; AT4g38910; At1g14685; At1g68120; At2g01930; At2g21240; At2g35550; At2g35550/T32F12.7; At4g38910; At5g42520; BBR; BBR/BPC1; BBR/BPC2; BBR/BPC3; BBR/BPC6; BPC1; BPC2; BPC3; BPC4; BPC6; F19H22.10; GSVIVT00017893001; GSVIVT00030652001; L

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	specific transcriptional repressor activity	GO:0016566	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	0.0	-
Sma3	GAGA binding-like	IPR010409	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G68120.1	BPC3, ATBPC3 basic pentacysteine 3 chr1:25526296-25527108 REVERSE LENGTH=270	64%
RefSeq	Arabidopsis thaliana	NP_176979.2	basic pentacysteine 3 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002301996.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
392	75		25		0.996473
407		75		25	0.996473
455	80		20		0.995493
478		80		20	0.995493
483		20	80		0.995493
525		25		75	0.996473
526		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain