SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13458

Length: 609 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene13458

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NADH-ubiquinone oxidoreductase chain 6 n=3 Tax=Triticum aestivum RepID=NU6M_WHEAT	-	-	75%
FL-Next	sp=NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). Plastid; Chloroplast.	-	-	29%
Sma3	NADH dehydrogenase subunit 6	-	-	-

Source	Gene names
Sma3	nad6;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6	IPR001457	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	ATMG00270.1	NAD6 NADH dehydrogenase 6 chrM:76642-77259 REVERSE LENGTH=205	83%
RefSeq	Arabidopsis thaliana	NP_085495.1	NADH dehydrogenase subunit 6 (mitochondrion) [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002336100.1	predicted protein, partial [Populus trichocarpa]	85%

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
102	33		66		0.997452
104			33	66	0.997452
105			33	66	0.997452
106		66	33		0.997452
131		33		66	0.997452
144		40		60	1.0
145			40	60	1.0
149		40		60	1.0
151			60	40	1.0
152	60			40	1.0
154		60	40		1.0
159	40		60		1.0
162		40		60	1.0
163	40			60	1.0
194	75	25			1.0
195	62	25		12	1.0
196	62		12	25	1.0
198		60	30	10	1.0
200	70			20	0.999998
205	90			10	0.90298
206		20		80	0.999996
207			10	90	0.90298
209	20	70		10	0.999998
212	10			90	0.90298
213		10		90	0.90298
215		10	90		0.90298
216	10			90	0.90298
224		70		30	1.0
309		10	90		0.90298
324		18		72	0.999994
444		33		66	1.0
550		25		75	0.996473
559		25		75	0.996473
560	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain