SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13336

Length: 819 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene13336

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glyoxal oxidase-related protein [Arabidopsis thaliana] gb\|AAL24259.1\| At1g19900/F6F9_4 [Arabidopsis thaliana] gb\|AEE29911.1\| glyoxal oxidase-related protein [Arabidopsis thaliana]	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	60%
Sma3	Glyoxal oxidase	-	-	2.067e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Galactose oxidase.	EC:1.1.3.9	-	4.381e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		4.381e-19	%

Source	Gene names
Sma3	At1g19900; At1g67290; At1g75620; At3g53950; At3g53950/F5K20_250; At3g57620; At5g19580; B1144G04.6; F14L17.20; F15B8.190; F5K20_250; F6F9.4; GSVIVT00000516001; GSVIVT00014487001; GSVIVT00015939001; GSVIVT00016700001; GSVIVT00021405001; GSVIVT00028985001; G

Source	GOs	Term	Type	e value	Identity
Sma3	galactose oxidase activity	GO:0045480	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Glyoxal oxidase, N-terminal	IPR009880	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G19900.1	glyoxal oxidase-related protein chr1:6907038-6908684 REVERSE LENGTH=548	54%
RefSeq	Arabidopsis thaliana	NP_173419.1	glyoxal oxidase-related protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002319613.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
23		75		25	0.996473
57		25		75	0.996473
74	25		75		0.996473
82	25		75		0.996473
93		75	25		0.996473
112		25	75		0.996473
134	25		75		0.996473
182	10			90	0.90298
213	80		20		0.999996
227		90		10	0.90298
237	10		90		0.90298
248	10			90	0.90298
323		12		87	0.992554
329	87	12			0.992554
346	12		87		0.992554
350		87		12	0.992554
353	12			87	0.992554
533	75			25	0.996473
534	25	75			0.996473
546		75		25	0.996473
570		25		75	0.996473
612		66		33	0.997452
619	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain