SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13170

Length: 1294 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene13170 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid transporter n=2 Tax=Solanum RepID=Q8GZV3_SOLLC	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Sma3	Amino acid permease	-	-	-

Source	Gene names
Sma3	24K23.18; AAP; AAP1; AAP2; AAP3; AAP4; AAP5; AAP6; AAPA; AAPB; AAPC; AT5G23810; At1g10010; At1g44100; At1g58360; At1g77380; At5g09220; At5g23810; At5g49630; At5g63850; B1065E10.27; B1370C05.25; F19C14.3; F2P24.9; GSVIVT00008237001; GSVIVT00012093001; GSVI

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	-
Sma3	acidic amino acid transmembrane transporter activity	GO:0015172	Molecular Function	-
Sma3	neutral amino acid transmembrane transporter activity	GO:0015175	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	amino acid transport	GO:0006865	Biological Process	-
Sma3	acidic amino acid transport	GO:0015800	Biological Process	-
Sma3	basic amino acid transport	GO:0015802	Biological Process	-
Sma3	neutral amino acid transport	GO:0015804	Biological Process	-
Sma3	aspartate transport	GO:0015810	Biological Process	-
Sma3	tryptophan transport	GO:0015827	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G77380.1	AAP3, ATAAP3 amino acid permease 3 chr1:29075201-29077252 REVERSE LENGTH=476	72%
RefSeq	Arabidopsis thaliana	NP_177862.1	amino acid permease 3 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002302223.1	amino acid permease [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQS2

Fln msg: Distance to subject end: 16 aas, your sequence is shorter than subject: 430 - 492

Fln protein: RKGTIWTASAHIITAIIGSGVLSLAWATAQLGWIAGPAAMLAFSFVTYYTSCLLSDCYRSPDPVTGKRNYTYIDAVRANLDGFQARICGFAQYANLFGTAIGYTIAASISMTAIQRSNCFSANGHDDPCQVSSNPYMIAFGVVEILLSQIPDFDQISWLSIVAAVMSFTYSTIGLGLGIAKVVEVGHFRGSFTGAAIGTVTKSEKIWNTFQALGNIAFAYSYSLILIEIQDTIKSPPAENKTMKKATLLGVATTTVFYMLCGCMGYAAFGDNAPGNLLTGFGFYNPFWLIDIANAAIVIHLVGAYQVYCQPLFAFIEGWAGKKWQDSDFINKEYALVVPFYGRFNVNLFRLVWRTAFVVTTTLISMLLPFFNNVVGLLGALAFWPLTVYFPVTMYIAQNKIPRWSSRWVAMQILSGVCLVVSVAAASGSI

Protein Length: 431

Fln nts: AACGCAAAGGCACAATATGGACAGCAAGTGCGCATATTATCACAGCAATCATAGGGTCTGGAGTGCTGTCATTGGCATGGGCAACAGCTCAATTAGGATGGATTGCCGGACCCGCAGCCATGCTTGCCTTCTCCTTTGTCACATATTATACGTCCTGCCTGCTTTCGGACTGCTACAGGTCTCCGGATCCAGTCACTGGAAAGCGAAATTATACTTATATTGATGCTGTGAGAGCCAATCTAGATGGCTTCCAGGCCCGGATATGCGGTTTCGCTCAGTATGCTAACCTATTCGGAACTGCAATTGGCTATACAATAGCTGCATCCATCAGTATGACCGCAATTCAGAGGTCCAATTGCTTCAGCGCTAATGGACATGATGACCCATGCCAGGTGTCCAGTAATCCATATATGATAGCCTTTGGCGTAGTAGAGATTCTACTTTCTCAGATACCCGACTTCGACCAAATATCGTGGCTCTCTATCGTTGCTGCAGTCATGTCATTCACCTATTCCACCATCGGGCTTGGCCTCGGTATCGCCAAAGTAGTAGAAGTGGGACACTTCAGGGGGAGCTTCACAGGAGCAGCCATTGGTACTGTGACTAAATCTGAGAAAATATGGAATACGTTCCAAGCTCTCGGCAACATTGCATTCGCTTACTCCTATTCATTGATTCTCATTGAAATTCAGGACACAATAAAATCGCCTCCAGCAGAGAACAAGACGATGAAGAAGGCAACGCTATTGGGTGTGGCAACGACAACGGTGTTCTACATGCTGTGTGGTTGCATGGGCTACGCAGCCTTTGGTGACAATGCACCGGGAAACCTGTTGACAGGCTTTGGTTTTTACAATCCCTTTTGGTTGATTGACATTGCCAACGCCGCCATTGTCATCCACTTGGTCGGTGCATATCAAGTTTACTGCCAACCACTGTTCGCATTTATTGAAGGGTGGGCCGGCAAAAAGTGGCAAGATAGTGACTTCATCAACAAGGAATACGCTCTGGTAGTACCCTTTTATGGGCGATTCAACGTGAATCTCTTCAGGCTTGTGTGGAGGACAGCCTTTGTAGTGACCACCACACTGATTTCCATGTTGCTTCCATTCTTCAACAATGTTGTGGGGCTTCTGGGGGCGTTGGCATTCTGGCCATTGACAGTATACTTTCCAGTGACTATGTATATTGCACAGAATAAAATCCCGCGCTGGTCTTCTAGGTGGGTTGCTATGCAAATACTGAGTGGAGTTTGTCTGGTTGTTTCAGTAGCAGCTGCCAGTGGATCCATAGT

Fln Alignment:

Contig13170___RKGTIWTASAHIITAIIGSGVLSLAWATAQLGWIAGPAAMLAFSFVTYYTSCLLSDCYRSPDPVTGKRNYTYIDAVRANLDGFQARICGFAQYANLFGTAIGYTIAASISMTAIQRSNCFSANGHDDPCQVSSNPYMIAFGVVEILLSQIPDFDQISWLSIVAAVMSFTYSTIGLGLGIAKVVEVGHFRGSFTGAAIGTVTKSEKIWNTFQALGNIAFAYSYSLILIEIQDTIKSPPAENKTMKKATLLGVATTTVFYMLCGCMGYAAFGDNAPGNLLTGFGFYNPFWLIDIANAAIVIHLVGAYQVYCQPLFAFIEGWAGKKWQDSDFINKEYALVVPFYGRFNVNLFRLVWRTAFVVTTTLISMLLPFFNNVVGLLGALAFWPLTVYFPVTMYIAQNKIPRWSSRWVAMQILSGVCLVVSVAAASGSI
B8LQS2_______________RTGTLWTASAHIITAVIGSGVLSLAWSMAQLGWIAGPAVLIAFSFITLYTSALLADCYRSLDPVNGKRNYNYMAAVKANLGGLQTWLCGFTQYSNLYGTAIGYTITASTSMAAINRSDCFHSKGKNYPCHPSNNPFMIMFGIVQLILSQIPDFDQLWWLSIVAAVMSFSYSSIGLGLSIGKVAE-GNFHGTLTGVTVGTITGAQKVWQTFQALGDIAFAYSYSMILIEIQDTLRSPPAENKTMKKATVLGVSVTTLFYTLSGCFGYAAFGNSAPGNLLTGFGFYNPFWLVDFANACVVVHLVGAYQVFVQPLFAFIEEWCSHKWPRSQFIHKSYNINIPGYGLYKANLFRLVWRTCFVISTTLISMLLPFFNDVVGILGAVGFWPLTVYFPVEMYIAQKKIRRFTTKWMLLQTLSVVSFIVSLAAAAGSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain