SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene13009

Length: 1501 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene13009

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S0D8_RICCO	-	-	3.0e-21	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Zinc finger protein, putative	-	-	4.554e-08	-

Source	Gene names
Sma3	At5g18650; At5g25560; GSVIVT00000606001; GSVIVT00019811001; GSVIVT00022148001; LOC_Os03g05270; LOC_Os10g31850; Os03g0145900; Os10g0456800; OsI_10008; OsI_33881; OsJ_31771; PGPD14; PHYPADRAFT_123633; PHYPADRAFT_147519; POPTRDRAFT_558319; POPTRDRAFT_565361;

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CHY-type	IPR008913	-	-
Sma3	Zinc finger, CTCHY-type	IPR017921	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G22920.1	CHY-type/CTCHY-type/RING-type Zinc finger protein chr5:7665143-7667031 FORWARD LENGTH=291	5.0e-20	55%
RefSeq	Arabidopsis thaliana	NP_001190397.1	CHY and CTCHY and RING-type zinc finger protein [Arabidopsis thaliana]	3.0e-21	68%
RefSeq	Populus trichocarpa	XP_002314304.1	predicted protein [Populus trichocarpa]	2.0e-25	60%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADR4

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 68 - 94

Fln protein: VWEKLDEEVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQTRGCHTTDTCRQ*

Protein Length: 69

Fln nts: TTTTTTCGTTTTCAATTATTCAGCCTGTTCGTGTTTTTATTTGAAATACCATGAAACAACACTTCCAGAATCCCAAGATTACAATTACATGTACAGCGAGAGGAATAAAAACTAGGATCAGAGCTGAGGCACAAATTAACTAAATTAAAGGAAGACTGGTTATCACAAAATATATCAGCTTCATTGACGAGTTTTAAATTTTCCATATTGTTTCAAAAATCCAGAATTTTTTTGGCAAATTCTCTGAAGTTTAGACAAGAAACTCGAGATAATAGAAATGGCATAACTACTGGTCCCCGTACACCCCAGTCTATTCCAAAAGGCGCTAAAATGATTTTTTCTTCAATTTTGACATGCACCAAGCTAGCCGCTGCTCTATCCGGCCTTTGCTTGTGTGCTTTCTGACCTGCCCCTGCCAAATCCATTGAAAGCTATCCTAGCAGGTCGAGCAAATGGCAACAAACTGCAATGCATAACTTTCAGAGCCACTCAGGCAGGACAGGTATTTATTCACTGCAGTAAAATTATAACATGATAGTACAGCCACTTTCATACAATCCAGAGGATATTTGATGCTTGTGAGGTATAATGAATCTTCATTGCAAGATCGTCTTCATGGCCGCAGCAGCTTTTACGATTGCTCATCAGAAACTTCAGTTAGACATCACAACGGCAACAGTTATCCCAGACAAGTGTCTGTGGTGTGACATCCTCTGGTCTGTCGGGTGTTATACGAATTGCAGTTCAGGCACTAATGTAGGTTTGGGAGAAACTTGACGAAGAGGTTGCTTTGACACCAATGCCCGAGTCCTACCAGAACAAGAAGATCTGGATTTTATGCAATGATTGTAATGCAACTTCAGAAGTACCGTTTCACATTGTCGCACAAAAGTGCCTGAACTGCAATTCGTATAACACCCGACAGACCAGAGGATGTCACACCACAGACACTTGTCGACAATAA___CTGTTGCCGTTGTGATGTCTAACTGAAGGTTCTGATGAGCAATCGTAAAAGCTGCTGCGGCCATGAAGACGATCTTGCAATGAAGATTCATTATACCTCACAAGCATCAAATATCCTCTGGATTGTATGAAAGTGGCTGTACTATCATGTTATAATTTTACTGCAGTGAATAAATACCTGTCCTGCCTGAGTGGCTCTGAAAGTTATGCATTGCAGTTTGTTGCCATTTGCTCGACCTGCTAGGATAGCTTTCAATGGATTTGGCAGGGGCAGATCAGAAAGCACACAAGCAAAGGCCGGATAGAGCAGCGGCTAGCTTGGTGCATGTCAAAATTGAAGAAAAAATCATTTTAGCGCCTTTTGGAATAGACTGGGGTGTACGGGGACCAGTAGTTATGCCATTTCTATTATCTCGAGTTTCTTGTCTAAACTTCAGAGAATTTGCCAAAAAAATTCTGGATTTTTGAAACAATATAGAAATGGCTTTCCAGTTCTTGGAAAATTTAAAACTCGTCAATGAAGCTGATATATTTTGTG

Fln Alignment:

Contig13009___VWEKLDEEVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQTRGCHTTDTCR
D5ADR4_______________VWEKLDEEVAATPMPESYQSKKIWILCNDCNATSEVLFHIVAQKCLNCNSYNTRQTRGCHTTNTCR

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
162			66	33	0.997452
300		85		14	0.993533
458			88	11	0.923564
463		87	12		0.992554
464	87			12	0.992554
465	87		12		0.992554
473			14	85	0.993533
477		14		85	0.993533
478	85		14		0.993533
481			14	85	0.993533
501	14		85		0.993533
537			83	16	0.994512
538	83		16		0.994512
550	16	83			0.994512
551			16	83	0.994512
552			16	83	0.994512
556		16		83	0.994512
559	83		16		0.994512
562		80		20	0.995493
563		80	20		0.995493
566	80			20	0.995493
570		20		80	0.995493
572			20	80	0.995493
573		20		60	0.99255
574		20		80	0.995493
575	20		80		0.995493
577			20	80	0.995493
581		20		80	0.995493
582	20		80		0.995493
583		20		80	0.995493
586		20	80		0.995493
596	75			25	0.996473
597			25	75	0.996473
598	25	75			0.996473
599			25	75	0.996473
601		75	25		0.996473
603		25		75	0.996473
604	25			75	0.996473
610	75		25		0.996473
613	25		75		0.996473
616			25	75	0.996473
617	25			75	0.996473
619	66		33		0.997452
1286		12		87	0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain