SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12957

Length: 3465 nt

UniGene Fasta

>sp_v3.0_unigene12957
ATGGGGAGACATGGGGATTCTGACCGTCTCCGACACGGATCCCCGCATAGACCCTCCAGAGTTCATGTAATAAGCGGGGATCGCAATAATGGAGCTCACAGGCGAATTCGTTGGTTCTCGGACTGCATTTTTGTGCCAATTTTAGGGCGAATGGCTGAATATAAGGTAAAAAACTGGCATCTGAAAATTCTACCGGTGAAACGCAGCGGTTGGTGGTTCTTCCCTGGCTTTTGCACAGAAACGGTTTAAGGTTTCATCGAATGTGGGAAATCCTCACGGAATTGCTTCAAATTTGTGGTTGGACGAGTGTTAGCTGTAGAGAATCGTTTTGTTTGGCGTATTCGTTGGGCGCAGTCGGATAATATTGCAACTTGTCCTTATATACTTCGCACAGAGCGGAATAATATATCATTTTTCAAGCTGAGCACAAAACAGGAGTTCTGCACTAGGAATGCCCTGAATAGAAGAGTTCGAGGCGAGTTTTGAACCGGGAAAGTTCTTTGATGTACTAAAGCACGGGTTTTTAATGAAGTATAGCTCAGAGGCTGGCTGAGAAGGAAAGCACTGACTGGACATTAGATCGACCGGCATCCATGGGGCCCTTGTATCGTTTCCGTCGCGTTCTTCGTATTTACGACTCACCCTCACGGCTCTTCCTCCGATTATGCCATTGTGGCATCTTGGTATTATCCGTTAAATCCTTTTTTAGATGAATTATTGGAGCTGGGCCAATCAGATACGTACCTCCGGATCCTCAAAATCCTGCCATAGTCAAGATGGAAGATTACGAGTATTCATATTCTGATAATAACAGAAGAATGAATTATAGTTTCCTGAAAAACTTCGGAGCAATGAATCTCGATCCAAATGTATCACCCAAGCTTTCGGCCCGTAATTCATACACAGGAGATTCGGCCGACGATTACAACGATGTGTTTGGAGGCCCCCCAAGGTATATCTCTTTTATGCAATCTCCCAAAGAGCATGGAGAAGGGCGTTTGTTGTTAGCACCTTCCAGTGGGTTTTCACGTTTACGACTGTTTGACGAGATTCCTGTATTTGGAGAAACAAGGAAGAAATATGTTAACGATGAATTTTACAACGATATCTTCAATCCAGATCCAGTTTTTAGTGCAGGAGAAACATCTGATAAGTGTTCAGTAACTTCCAGATCCACGCCCAGAAACCTCAGCCCTCCTCGGACTCCTTTATCCAGAATTGCTGAGAACAAAGCCTTCGGTACTGGATCTCCATTTGTAAATCTCAGGCAGTCTGGAATCTCTTCAAAGCAAACAGAGTATCCTCTCTTTGGCACCTCTCCTCACCATGGGCCGAACAAATGTTCGGATCTTACATTTGTATCTAGCGCTCAGTCTTCCCCACAGTCTGAGGCTTCCCCACATGCTCACTCTTCAGATTTACTGGAAATGCCTTTTGGAAGCTCTAGTAAAGCCAAAAAAATATTGCAGGGGCTTAAAAGGAATCAGGACCTTAGTGGGTTGCCTCCACGGACCTCTAATTCTCGTTTCCAATCGTTCCTTGAAACCAGGGAAACTATTTTACAAAGCCCAGTTCGATTGAACAATGAGAAGCTGTATTCTACTCCTCAAATTCCGTCTTGCAGCAATACGTCAGATGACGAGTGGGGAAACAGCATCCACAGATTGCATACGCGTATAAACAGGGGAGCTTCTAAACCGGTTATAAAAAGGCATAGCTCCTCCGACACTGCCAAGTCGGTCAATTCAATAGAAATGGCGGATGATGGTTTTGAAAAGGCACGTTTGTCATCAGCTAGTGATGTGCCTTTTACGGAACACAGACGCCTAGTGGTTTCCTCTCCTTCTCGGGCTCTGCATGCACAAGCCAAGTTAAAGAGTTGGAGAGATTGGGTTCCGGAGTCCAAAGTGGGGTTGCATTCAAATCAGGAGAGCGAATCGCCTTCCGTGGTTTCATCAGAGATTTCCTCAGCAAAGGAAATTCATACTAATGCCGGGGCCTTCGTTGCACAGGAAGCAAGCCAAGACATTGGATCGGAACCACCTGTTGACAGTGGGGAAGAATCGGATGATCTTGGATCATATGTTATTGAAATTAATGCCCAGAAAGGGGAGACCTTTGCTTTTCTTCCAGAGAAGGACATTCAAGTAGATACTAGCAATGCATCTGATCCTGAAACAATGGAATGGGCAAATGAGAAATTCTTAACAAGAAGGATAGCAGAAGGATTGGCTCATCATGCCAAAGGGGGTAAATTAAAAAGACAAGATAATGATGTTGATACTTTACGGTATGTAGAAGCCAGGATGCAAATTACTAAAGAAATTGTCAAAAAGAAAGCGTCCAGTAAAAGGTCTACTGACCAACAGACTACTGAAAGATCTACAAGTTCAAATCCAGTTACAGAGGTCATTTGCAGCAAGATAACCATGGAACAAAATATTTATTCGGCCGCCTCTCCTACAGTTCCTAAGGAAAAGTTGATAAATGACGTCCGAAGGGAAACTCTGGCGAATCCTTATTCAATTGACATCCCAAGCATGGTTCAGGAAGTCTCTCAAAGGATAGAGAGATGGCAGTGTGAGAAACCTGTAGTTTTCCGTGAAATTTCAGTAGCACCGGAAAGGAAAAACAGCTTAGAATCATTTTCTGATGGAGCAACTGCGAGGAAGACTCCTGAAATTATGAGAAAAGGACCGGAGATAGAACGCCGGCACCAAAGTGGTGAGCGTTTGCTGCAGTCAAAAAGCGTGGTCGAAAAGAAGCAAAATGATTTAGAAGCAGAACGAGAACAATCAGAGAAAATTAAAAGCCCAGAAACACTGGATAGCGAGATAAAACGCTGGTCAGCGGGCAAGGAAGGCAATATTCGTTCCTTGCTATCAACGATGCAATATGTACTTTGGCCAGAGAGTGGATGGAAGCCAGTTCCCTTAATTGAGATTATTGAAGGGGTTGCTGTGAAGAAAGCCTATCAAAGGGCAAGGCTCTGTGTACATCCAGATAAATTGCAACAAAAAGGTGCAACCTTTCAGCAAAAGTACATTGCTAAGAGGGTCTTTGACATTCTACAGGAAGCGTGGACGATCTTTAATTCATTAGATCCCTTCTAATGTTTCAACAGCATGGATGATGAAGCATAACAGCTGTGGCGGGATTCAATATTTTATTTTGTGAATAACATTAGCAGTTTTCTTACTCCCTCCGAAATCTTCATATCCTATTTGCATTTCCTTAGTGCATAAATATGGTTCAGTGTTTGTATGGTGGGAAGCGGACTGCTTTGGTGTATATAAAAAAAAAGGTCATTTTATACCATGCCTTTGTAACTTGGTCACATAAGGCTGAATTTTTCAAAAGATAACTTCATTTTGCTTTGATCTGGATTGAAACTGTACGAGTGTAGAGTTTTGTAATCTGAAAAACCATAAACCATTTTCTTTGCCGAAATTAATCTTCTGTTAT

Ace file of the UniGene sp_v3.0_unigene12957

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxilin, putative n=1 Tax=Ricinus communis RepID=B9SF05_RICCO	-	-	1.00053e-42	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Auxilin-like protein	-	-	1.031e-19	-

Source	Gene names
Sma3	AT1G21660; AT4g12770; AT4g12780; AT4g36520; At1g30280; At1g75100; At4g12770; At4g12780; At4g36520; B1157F09.8; C7A10.840; F12P21.7; F1B16.14; F9E10.5; GSVIVT00004408001; GSVIVT00008238001; GSVIVT00019313001; GSVIVT00024899001; JAC1; LOC_Os11g43950; LOC_Os

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	chloroplast accumulation movement	GO:0009904	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Lipid-binding START	IPR002913	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002301577.1	predicted protein, partial [Populus trichocarpa]	0.0	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAW0

Fln msg: your sequence is longer than subject: 779 - 112

Fln protein: MEDYEYSYSDNNRRMNYSFLKNFGAMNLDPNVSPKLSARNSYTGDSADDYNDVFGGPPRYISFMQSPKEHGEGRLLLAPSSGFSRLRLFDEIPVFGETRKKYVNDEFYNDIFNPDPVFSAGETSDKCSVTSRSTPRNLSPPRTPLSRIAENKAFGTGSPFVNLRQSGISSKQTEYPLFGTSPHHGPNKCSDLTFVSSAQSSPQSEASPHAHSSDLLEMPFGSSSKAKKILQGLKRNQDLSGLPPRTSNSRFQSFLETRETILQSPVRLNNEKLYSTPQIPSCSNTSDDEWGNSIHRLHTRINRGASKPVIKRHSSSDTAKSVNSIEMADDGFEKARLSSASDVPFTEHRRLVVSSPSRALHAQAKLKSWRDWVPESKVGLHSNQESESPSVVSSEISSAKEIHTNAGAFVAQEASQDIGSEPPVDSGEESDDLGSYVIEINAQKGETFAFLPEKDIQVDTSNASDPETMEWANEKFLTRRIAEGLAHHAKGGKLKRQDNDVDTLRYVEARMQITKEIVKKKASSKRSTDQQTTERSTSSNPVTEVICSKITMEQNIYSAASPTVPKEKLINDVRRETLANPYSIDIPSMVQEVSQRIERWQCEKPVVFREISVAPERKNSLESFSDGATARKTPEIMRKGPEIERRHQSGERLLQSKSVVEKKQNDLEAEREQSEKIKSPETLDSEIKRWSAGKEGNIRSLLSTMQYVLWPESGWKPVPLIEIIEGVAVKKAYQRARLCVHPDKLQQKGATFQQKYIAKRVFDILQEAWTIFNSLDPF*

Protein Length: 780

Fln nts: ATGGGGAGACATGGGGATTCTGACCGTCTCCGACACGGATCCCCGCATAGACCCTCCAGAGTTCATGTAATAAGCGGGGATCGCAATAATGGAGCTCACAGGCGAATTCGTTGGTTCTCGGACTGCATTTTTGTGCCAATTTTAGGGCGAATGGCTGAATATAAGGTAAAAAACTGGCATCTGAAAATTCTACCGGTGAAACGCAGCGGTTGGTGGTTCTTCCCTGGCTTTTGCACAGAAACGGTTTAAGGTTTCATCGAATGTGGGAAATCCTCACGGAATTGCTTCAAATTTGTGGTTGGACGAGTGTTAGCTGTAGAGAATCGTTTTGTTTGGCGTATTCGTTGGGCGCAGTCGGATAATATTGCAACTTGTCCTTATATACTTCGCACAGAGCGGAATAATATATCATTTTTCAAGCTGAGCACAAAACAGGAGTTCTGCACTAGGAATGCCCTGAATAGAAGAGTTCGAGGCGAGTTTTGAACCGGGAAAGTTCTTTGATGTACTAAAGCACGGGTTTTTAATGAAGTATAGCTCAGAGGCTGGCTGAGAAGGAAAGCACTGACTGGACATTAGATCGACCGGCATCCATGGGGCCCTTGTATCGTTTCCGTCGCGTTCTTCGTATTTACGACTCACCCTCACGGCTCTTCCTCCGATTATGCCATTGTGGCATCTTGGTATTATCCGTTAAATCCTTTTTTAGATGAATTATTGGAGCTGGGCCAATCAGATACGTACCTCCGGATCCTCAAAATCCTGCCATAGTCAAG_-_ATGGAAGATTACGAGTATTCATATTCTGATAATAACAGAAGAATGAATTATAGTTTCCTGAAAAACTTCGGAGCAATGAATCTCGATCCAAATGTATCACCCAAGCTTTCGGCCCGTAATTCATACACAGGAGATTCGGCCGACGATTACAACGATGTGTTTGGAGGCCCCCCAAGGTATATCTCTTTTATGCAATCTCCCAAAGAGCATGGAGAAGGGCGTTTGTTGTTAGCACCTTCCAGTGGGTTTTCACGTTTACGACTGTTTGACGAGATTCCTGTATTTGGAGAAACAAGGAAGAAATATGTTAACGATGAATTTTACAACGATATCTTCAATCCAGATCCAGTTTTTAGTGCAGGAGAAACATCTGATAAGTGTTCAGTAACTTCCAGATCCACGCCCAGAAACCTCAGCCCTCCTCGGACTCCTTTATCCAGAATTGCTGAGAACAAAGCCTTCGGTACTGGATCTCCATTTGTAAATCTCAGGCAGTCTGGAATCTCTTCAAAGCAAACAGAGTATCCTCTCTTTGGCACCTCTCCTCACCATGGGCCGAACAAATGTTCGGATCTTACATTTGTATCTAGCGCTCAGTCTTCCCCACAGTCTGAGGCTTCCCCACATGCTCACTCTTCAGATTTACTGGAAATGCCTTTTGGAAGCTCTAGTAAAGCCAAAAAAATATTGCAGGGGCTTAAAAGGAATCAGGACCTTAGTGGGTTGCCTCCACGGACCTCTAATTCTCGTTTCCAATCGTTCCTTGAAACCAGGGAAACTATTTTACAAAGCCCAGTTCGATTGAACAATGAGAAGCTGTATTCTACTCCTCAAATTCCGTCTTGCAGCAATACGTCAGATGACGAGTGGGGAAACAGCATCCACAGATTGCATACGCGTATAAACAGGGGAGCTTCTAAACCGGTTATAAAAAGGCATAGCTCCTCCGACACTGCCAAGTCGGTCAATTCAATAGAAATGGCGGATGATGGTTTTGAAAAGGCACGTTTGTCATCAGCTAGTGATGTGCCTTTTACGGAACACAGACGCCTAGTGGTTTCCTCTCCTTCTCGGGCTCTGCATGCACAAGCCAAGTTAAAGAGTTGGAGAGATTGGGTTCCGGAGTCCAAAGTGGGGTTGCATTCAAATCAGGAGAGCGAATCGCCTTCCGTGGTTTCATCAGAGATTTCCTCAGCAAAGGAAATTCATACTAATGCCGGGGCCTTCGTTGCACAGGAAGCAAGCCAAGACATTGGATCGGAACCACCTGTTGACAGTGGGGAAGAATCGGATGATCTTGGATCATATGTTATTGAAATTAATGCCCAGAAAGGGGAGACCTTTGCTTTTCTTCCAGAGAAGGACATTCAAGTAGATACTAGCAATGCATCTGATCCTGAAACAATGGAATGGGCAAATGAGAAATTCTTAACAAGAAGGATAGCAGAAGGATTGGCTCATCATGCCAAAGGGGGTAAATTAAAAAGACAAGATAATGATGTTGATACTTTACGGTATGTAGAAGCCAGGATGCAAATTACTAAAGAAATTGTCAAAAAGAAAGCGTCCAGTAAAAGGTCTACTGACCAACAGACTACTGAAAGATCTACAAGTTCAAATCCAGTTACAGAGGTCATTTGCAGCAAGATAACCATGGAACAAAATATTTATTCGGCCGCCTCTCCTACAGTTCCTAAGGAAAAGTTGATAAATGACGTCCGAAGGGAAACTCTGGCGAATCCTTATTCAATTGACATCCCAAGCATGGTTCAGGAAGTCTCTCAAAGGATAGAGAGATGGCAGTGTGAGAAACCTGTAGTTTTCCGTGAAATTTCAGTAGCACCGGAAAGGAAAAACAGCTTAGAATCATTTTCTGATGGAGCAACTGCGAGGAAGACTCCTGAAATTATGAGAAAAGGACCGGAGATAGAACGCCGGCACCAAAGTGGTGAGCGTTTGCTGCAGTCAAAAAGCGTGGTCGAAAAGAAGCAAAATGATTTAGAAGCAGAACGAGAACAATCAGAGAAAATTAAAAGCCCAGAAACACTGGATAGCGAGATAAAACGCTGGTCAGCGGGCAAGGAAGGCAATATTCGTTCCTTGCTATCAACGATGCAATATGTACTTTGGCCAGAGAGTGGATGGAAGCCAGTTCCCTTAATTGAGATTATTGAAGGGGTTGCTGTGAAGAAAGCCTATCAAAGGGCAAGGCTCTGTGTACATCCAGATAAATTGCAACAAAAAGGTGCAACCTTTCAGCAAAAGTACATTGCTAAGAGGGTCTTTGACATTCTACAGGAAGCGTGGACGATCTTTAATTCATTAGATCCCTTCTAA___TGTTTCAACAGCATGGATGATGAAGCATAACAGCTGTGGCGGGATTCAATATTTTATTTTGTGAATAACATTAGCAGTTTTCTTACTCCCTCCGAAATCTTCATATCCTATTTGCATTTCCTTAGTGCATAAATATGGTTCAGTGTTTGTATGGTGGGAAGCGGACTGCTTTGGTGTATATAAAAAAAAAGGTCATTTTATACCATGCCTTTGTAACTTGGTCACATAAGGCTGAATTTTTCAAAAGATAACTTCATTTTGCTTTGATCTGGATTGAAACTGTACGAGTGTAGAGTTTTGTAATCTGAAAAACCATAAACCATTTTCTTTGCCGAAATTAATCTTCTGTTAT

Fln Alignment:

Contig12957___LEAEREQSEKIKSPETLDSEIKRWSAGKEGNIRSLLSTMQYVLWPESGWKPVPLIEIIEGVAVKKAYQRARLCVHPDKLQQKGATFQQKYIAKRVFDILQEAWTIFNSLDPF
D5AAW0_______________MQAQRDQAERHRFAETLDAEIKRWAAGKEGNLRALLSTLQYVLWPESGWQAVSLTDIIIGSSVKKVYRKATLCVHPDKVQQKGATIQQKYIAEKVFDLLKEAWNKFNSEELF

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
95		75	25		0.996473
97		75	25		0.996473
100	75	25			0.996473
101			75	25	0.996473
102			75	25	0.996473
103		75	25		0.996473
105	75	25			0.996473
106	75			25	0.996473
107			25	75	0.996473
110	25		50		0.995533
111		25		75	0.996473
114		25	75		0.996473
115	25			75	0.996473
164	75	25			0.996473
526	25	25		50	0.995533
527	25		25	50	0.995533
530		25		75	0.996473
626		33		66	0.997452
1003	20			80	0.995493
1004	20			80	0.995493
1033	80			20	0.995493
1398	25		75		0.996473
1400		25		75	0.996473
1627	16			83	0.994512
1630		83	16		0.994512
1631	83		16		0.994512
2073		85	14		0.993533
2678		25	75		0.996473
2679	25		75		0.996473
2680	75			25	0.996473
2681	75			25	0.996473
2746		33	66		1.0
2748	33		66		1.0
2750	33	66			1.0
2751	33		66		1.0
2842	16		83		0.994512
2926	11		88		0.923564
2972		14		85	0.993533
3204		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain