SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12911

Length: 3213 nt

UniGene Fasta

>sp_v3.0_unigene12911
AATGTAAGCAGTGTTAGCAACGCAGAGTACGATGGGGACTCCTTACTCGAGCTGTTGCCACATCCTGCAATGTTGAGCTCTTATTTTCATTGAAGGTGTTTCTGTTAATTCGTCTATCTCTTTAGAAGTTTCCTGCCTCTGTATTTCACAAAAGTTTCAGGAGTGTCTGTGTTGTAATTCCAGTGGGGACAGAATTGAATTCTGTTATCAGAGGATCCATCAGCATTGTAGGAGGGCCAGTAGGCAACAGCAAATAACAGTTAATTTCTCCTTTTAATTGTTGGTATTGGCATCCATATAAAAGCAAAGGAAAATATGGTTGCTGCAGCGCTCACCCATGCACTGACTTCACGAGAGCGTGTTGAGGACATGCTCTCTGAACACCGCAATGAAATAGTTTCTCTGCTTTCAAGATATGTAGCAGAAGGGAAGAAGATTTTGCAGCCTCATCAACTATTAGATGGACTAGAAGAGGTCATAGGAAAGAATGTTGAGCTTGAAAGCCTCCGACATGGCCTATTTGGAGATGTGTTGAGGTCTACCCAGGAGGCAATTGTTCTTCCACCATGGATTGCTCTTGCGGTACGGCCAAGACCTGGTGTGTGGGAATATGTTCGAGTCAATGTTGATGAACTTGCTGTTGAACAGCTTTCTGTTGCTGAATATTTGGAATTCAAGGAGCACCTTGTGAATGGAAGCGTCAAGGATGACTACGTCCTGGAGCTAGACTTTGAACCTTTCAATGCATCCTTTCCGCGCCCAACAAGGCCATCCTCCATTGGTAGTGGAGTTCAATTTTTGAACCGACATTTATCCTCGAGACTATTCCGTGACAAAGAAAGCATGCAGCCGTTGCTAGATTTCCTTCGAGTGCACAAATACCGAGGCCAGAAGCTGATGCTCAATGAGAGGATACAGAGTTTGCCTGGGCTACGCTCAGCCTTGGTAAAAACAGAAGAGCATCTCAAAAAGTTCCCCAAGGATACGCCATATGCAGAGTTTGAATACAAGTTACAAGAAATGGGATTGGAAAAAGGATGGGGAGAGAATGCAGAACATGTCTTGGATACGATTCATTTGCTCTTGGAGATCCTTCAGGCACCTGATCCATCAAATTTAGAAACTTTTCTAGGAAGGGTTCCTATGGTCTTTAATGTTGTGATTCTTTCACCTCATGGTTATTTTGGCCAAGCAAATGTTTTAGGAATGCCCGACACCGGTGGACAGGTTGTGTATATACTTGATCAATGTCGCGCCTTGGAGAATGAAATGCTATTGAGAATAAAACAACAAGGATTGGACATTACGCCTGAGATTATTGTGGTGACTCGGCTGATCCCTGAGGCTCACGGGACAACATGCAATCAACGACTTGAAAAAATTAGTGGAACACAACATTCACGGATCCTACGGGTGCCCTTCAGAACAGAAAAAGGAGTTGTGCGCGACTGGGTTTCTCGATTTGATGTGTGGCCTTACTTGGAAAGATTTTCGGAGGATGTAACAAATGAAATAGCCGTGGAGCTGAAAGGTCAACCTGATCTGATTATTGGCAATTACAGTGATGGAAATTTAGTCGCATCTTTGATGGCACATAAACAAGGAATCACTCAGTGCAACATAGCCCATGCTTTGGAGAAGACCAAATACCCCAGATTCGGACATATATTGGAAGAATTTTGAAGAAAAATACCATTTCTCTTGTCAGTTTACTGCAGATCTAATCGCAATGAACCATGCGGATTTCATTATCACTAGCACATATCAAGAGATTGCAGGGAGCAAGGATACTGTTGGACAGTACGAAAGCCACACTGCTTTCACCCTTCCTGGTCTCTACCGTGTGGTACATGGAATTGATGTTTTTGATCCCAAGTTCAACATTGTTTCTCCTGGAGCAGACATGCAGATTTATTTCCCTTATACAGACAAGCAGCATCGCCTTACTGCTTTACATGGTACAATTGAGGAACTCTTGTTCAATCCTGAACAGACAGCTGAACATATGTGTGCCTTGAATGACCGTAAAAAGCCCATTATCTTTTCTATGGCAAGACTCGACCGGGTTAAAAATATGACAGGATTGGTTGAATGGTTTGCAAAAAGCAAACGCTTGAGGGAGTTGGTTAACCTTGTCGTGGTTGCTGGTGATATTGACCCATCAAAGTCCAAAGACAGAGAAGAAGTGGCCGAAATTGAAAAAATGCATCGACTAGTTAAAGAGTATAACCTGAATGGTCAGTTCAGATGGATATGTGCACAAAAGAATAGAGTCCGGAACGGTGAGCTTTACCGCTACATCTGTGACACCAGGGGTGCCTTTGTACAGCCTGCACTTTATGAAGCTTTTGGGCTTACTGTTGTTGAAGCAATGACATGTGGTCTTCCTACATTCGCAACCTGTAATGGGGGTCCTGCTGAAATTATTGTCGATGGGGTGTCCGGATTTCATATTGATCCCTACCATGGCGTTTCTGCAACTGAACGCATTGCTGATTTTTTCGAGAAGTGCAAGACAGATCCCAGTCATTGGGAGAAGATCTCTAATGGTGGTCTACAGCGTATCTATGAAAAGTATACATGGCAGATTTATGCCGACAGATTAATGACGCTGTCTGGAGTTTATGGGTTTTGGAAGTATGTATCAAAACTTGAAAGGCGAGAGACACGCCGCTATCTGGAGATGTTTTACAGCTTAAAGTACAGAAATCTGGTTAAAACTGTCCCATTAGCTGTTGAAGAAAGTGCCAATGGGATTGAAGAGAAGAGTACAGAATTGCTTGCAACCAACGGAACCTTGGTTCATAATCATTGAGTGCCACAGCTCCTCTCCTGGTTAATAAGCACTGAGTGGCAGAATAAGTGTCAAGAAGAGGCTGTTTCATTATTCAACTTTCAGAGTATGTGAGAGGGGTTTGGTAATTTTGTGTTTGAGTTTTTATGTATTCGTATTTTCTATGGAGGGTCTGGCATTCTTCTAATGGAAAATCATGGTGCAGTCGATGAACTGCTCATGACTCCGAGGTGCCTGACACCATGACAAATAATTTTATTCATTCATTTTCAACGGGATGAGCAAAGATAGAATCAGAATTCAGAATATCTGAAGTTGTGAGTGCCATACACTTGCTACCGTGCTGTAGCAGTGGTTGTTCAAGAAACTGGAAATAAATGAAATAAAAAAAGTGCCCATTGGAGTGTTTTGAGTTCTAC

Ace file of the UniGene sp_v3.0_unigene12911

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sucrose synthase n=1 Tax=Pinus taeda RepID=A6N837_PINTA	-	-	95%
FL-Next	tr=Sucrose synthase; Pinus taeda (Loblolly pine).	-	-	95%
Sma3	Sucrose synthase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sucrose synthase.	EC:2.4.1.13	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	At1g73370; At3g43190; At4g02280; At5g20830; At5g49190; B1056G08.118; BoSS; CSS1; CitSS2; CitSUS1; CitSUS1-2; CitSUSA; CitSUSA-2; F7K15_40; FaSS; GSVIVT00000882001; GSVIVT00003157001; GSVIVT00016378001; GSVIVT00023450001; GSVIVT00026116001; GSVIVT000280360

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	sucrose synthase activity	GO:0016157	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	sucrose-phosphate synthase activity	GO:0046524	Molecular Function	-
Sma3	response to hypoxia	GO:0001666	Biological Process	-
Sma3	sucrose metabolic process	GO:0005985	Biological Process	-
Sma3	trehalose biosynthetic process	GO:0005992	Biological Process	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to flooding	GO:0009413	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sucrose synthase	IPR000368	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	Sucrose synthase, plant/cyanobacteria	IPR012820	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G49190.1	SUS2, SSA, ATSUS2 sucrose synthase 2 chr5:19943369-19947189 REVERSE LENGTH=807	69%
RefSeq	Arabidopsis thaliana	NP_199730.1	sucrose synthase 2 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002302727.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A6N837

Fln msg: Overlapping hits, possible frame ERROR between 1653 and 1652,

Fln protein: MVAAALTHALTSRERVEDMLSEHRNEIVSLLSRYVAEGKKILQPHQLLDGLEEVIGKNVELESLRHGLFGDVLRSTQEAIVLPPWIALAVRPRPGVWEYVRVNVDELAVEQLSVAEYLEFKEHLVNGSVKDDYVLELDFEPFNASFPRPTRPSSIGSGVQFLNRHLSSRLFRDKESMQPLLDFLRVHKYRGQKLMLNERIQSLPGLRSALVKTEEHLKKFPKDTPYAEFEYKLQEMGLEKGWGENAEHVLDTIHLLLEILQAPDPSNLETFLGRVPMVFNVVILSPHGYFGQANVLGMPDTGGQVVYILDQCRALENEMLLRIKQQGLDITPEIIVVTRLIPEAHGTTCNQRLEKISGTQHSRILRVPFRTEKGVVRDWVSRFDVWPYLERFSEDVTNEIAVELKGQPDLIIGNYSDGNLVASLMAHKQGITQCNIAHALEKTKYxxDSDIYWKNFEEKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMQIYFPYTDKQHRLTALHGTIEELLFNPEQTAEHMCALNDRKKPIIFSMARLDRVKNMTGLVEWFAKSKRLRELVNLVVVAGDIDPSKSKDREEVAEIEKMHRLVKEYNLNGQFRWICAQKNRVRNGELYRYICDTRGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVDGVSGFHIDPYHGVSATERIADFFEKCKTDPSHWEKISNGGLQRIYEKYTWQIYADRLMTLSGVYGFWKYVSKLERRETRRYLEMFYSLKYRNLVKTVPLAVEESANGIEEKSTELLATNGTLVHNH*

Protein Length: 835

Fln nts: AATGTAAGCAGTGTTAGCAACGCAGAGTACGATGGGGACTCCTTACTCGAGCTGTTGCCACATCCTGCAATGTTGAGCTCTTATTTTCATTGAAGGTGTTTCTGTTAATTCGTCTATCTCTTTAGAAGTTTCCTGCCTCTGTATTTCACAAAAGTTTCAGGAGTGTCTGTGTTGTAATTCCAGTGGGGACAGAATTGAATTCTGTTATCAGAGGATCCATCAGCATTGTAGGAGGGCCAGTAGGCAACAGCAAATAACAGTTAATTTCTCCTTTTAATTGTTGGTATTGGCATCCATATAAAAGCAAAGGAAAAT_-_ATGGTTGCTGCAGCGCTCACCCATGCACTGACTTCACGAGAGCGTGTTGAGGACATGCTCTCTGAACACCGCAATGAAATAGTTTCTCTGCTTTCAAGATATGTAGCAGAAGGGAAGAAGATTTTGCAGCCTCATCAACTATTAGATGGACTAGAAGAGGTCATAGGAAAGAATGTTGAGCTTGAAAGCCTCCGACATGGCCTATTTGGAGATGTGTTGAGGTCTACCCAGGAGGCAATTGTTCTTCCACCATGGATTGCTCTTGCGGTACGGCCAAGACCTGGTGTGTGGGAATATGTTCGAGTCAATGTTGATGAACTTGCTGTTGAACAGCTTTCTGTTGCTGAATATTTGGAATTCAAGGAGCACCTTGTGAATGGAAGCGTCAAGGATGACTACGTCCTGGAGCTAGACTTTGAACCTTTCAATGCATCCTTTCCGCGCCCAACAAGGCCATCCTCCATTGGTAGTGGAGTTCAATTTTTGAACCGACATTTATCCTCGAGACTATTCCGTGACAAAGAAAGCATGCAGCCGTTGCTAGATTTCCTTCGAGTGCACAAATACCGAGGCCAGAAGCTGATGCTCAATGAGAGGATACAGAGTTTGCCTGGGCTACGCTCAGCCTTGGTAAAAACAGAAGAGCATCTCAAAAAGTTCCCCAAGGATACGCCATATGCAGAGTTTGAATACAAGTTACAAGAAATGGGATTGGAAAAAGGATGGGGAGAGAATGCAGAACATGTCTTGGATACGATTCATTTGCTCTTGGAGATCCTTCAGGCACCTGATCCATCAAATTTAGAAACTTTTCTAGGAAGGGTTCCTATGGTCTTTAATGTTGTGATTCTTTCACCTCATGGTTATTTTGGCCAAGCAAATGTTTTAGGAATGCCCGACACCGGTGGACAGGTTGTGTATATACTTGATCAATGTCGCGCCTTGGAGAATGAAATGCTATTGAGAATAAAACAACAAGGATTGGACATTACGCCTGAGATTATTGTGGTGACTCGGCTGATCCCTGAGGCTCACGGGACAACATGCAATCAACGACTTGAAAAAATTAGTGGAACACAACATTCACGGATCCTACGGGTGCCCTTCAGAACAGAAAAAGGAGTTGTGCGCGACTGGGTTTCTCGATTTGATGTGTGGCCTTACTTGGAAAGATTTTCGGAGGATGTAACAAATGAAATAGCCGTGGAGCTGAAAGGTCAACCTGATCTGATTATTGGCAATTACAGTGATGGAAATTTAGTCGCATCTTTGATGGCACATAAACAAGGAATCACTCAGTGCAACATAGCCCATGCTTTGGAGAAGACCAAATACxxxxxxGATTCGGACATATATTGGAAGAATTTTGAAGAAAAATACCATTTCTCTTGTCAGTTTACTGCAGATCTAATCGCAATGAACCATGCGGATTTCATTATCACTAGCACATATCAAGAGATTGCAGGGAGCAAGGATACTGTTGGACAGTACGAAAGCCACACTGCTTTCACCCTTCCTGGTCTCTACCGTGTGGTACATGGAATTGATGTTTTTGATCCCAAGTTCAACATTGTTTCTCCTGGAGCAGACATGCAGATTTATTTCCCTTATACAGACAAGCAGCATCGCCTTACTGCTTTACATGGTACAATTGAGGAACTCTTGTTCAATCCTGAACAGACAGCTGAACATATGTGTGCCTTGAATGACCGTAAAAAGCCCATTATCTTTTCTATGGCAAGACTCGACCGGGTTAAAAATATGACAGGATTGGTTGAATGGTTTGCAAAAAGCAAACGCTTGAGGGAGTTGGTTAACCTTGTCGTGGTTGCTGGTGATATTGACCCATCAAAGTCCAAAGACAGAGAAGAAGTGGCCGAAATTGAAAAAATGCATCGACTAGTTAAAGAGTATAACCTGAATGGTCAGTTCAGATGGATATGTGCACAAAAGAATAGAGTCCGGAACGGTGAGCTTTACCGCTACATCTGTGACACCAGGGGTGCCTTTGTACAGCCTGCACTTTATGAAGCTTTTGGGCTTACTGTTGTTGAAGCAATGACATGTGGTCTTCCTACATTCGCAACCTGTAATGGGGGTCCTGCTGAAATTATTGTCGATGGGGTGTCCGGATTTCATATTGATCCCTACCATGGCGTTTCTGCAACTGAACGCATTGCTGATTTTTTCGAGAAGTGCAAGACAGATCCCAGTCATTGGGAGAAGATCTCTAATGGTGGTCTACAGCGTATCTATGAAAAGTATACATGGCAGATTTATGCCGACAGATTAATGACGCTGTCTGGAGTTTATGGGTTTTGGAAGTATGTATCAAAACTTGAAAGGCGAGAGACACGCCGCTATCTGGAGATGTTTTACAGCTTAAAGTACAGAAATCTGGTTAAAACTGTCCCATTAGCTGTTGAAGAAAGTGCCAATGGGATTGAAGAGAAGAGTACAGAATTGCTTGCAACCAACGGAACCTTGGTTCATAATCATTGA___GTGCCACAGCTCCTCTCCTGGTTAATAAGCACTGAGTGGCAGAATAAGTGTCAAGAAGAGGCTGTTTCATTATTCAACTTTCAGAGTATGTGAGAGGGGTTTGGTAATTTTGTGTTTGAGTTTTTATGTATTCGTATTTTCTATGGAGGGTCTGGCATTCTTCTAATGGAAAATCATGGTGCAGTCGATGAACTGCTCATGACTCCGAGGTGCCTGACACCATGACAAATAATTTTATTCATTCATTTTCAACGGGATGAGCAAAGATAGAATCAGAATTCAGAATATCTGAAGTTGTGAGTGCCATACACTTGCTACCGTGCTGTAGCAGTGGTTGTTCAAGAAACTGGAAATAAATGAAATAAAAAAAGTGCCCATTGGAGTGTTTTGAGTTCTAC

Fln Alignment:

Contig12911___MVAAALTHALTSRERVEDMLSEHRNEIVSLLSRYVAEGKKILQPHQLLDGLEEVIGKNVELESLRHGLFGDVLRSTQEAIVLPPWIALAVRPRPGVWEYVRVNVDELAVEQLSVAEYLEFKEHLVNGSVKDDYVLELDFEPFNASFPRPTRPSSIGSGVQFLNRHLSSRLFRDKESMQPLLDFLRVHKYRGQKLMLNERIQSLPGLRSALVKTEEHLKKFPKDTPYAEFEYKLQEMGLEKGWGENAEHVLDTIHLLLEILQAPDPSNLETFLGRVPMVFNVVILSPHGYFGQANVLGMPD--TGGQVVYILDQCRALENEMLLRIKQQGLDITPEIIVVTRLIPEAHGTTCNQRLEKISGTQHSRILRVPFRTEKGVVRDWVSRFDVWPYLERFSEDVTNEIAVELKGQPDLIIGNYSDGNLVASLMAHKQGITQCNIAHALEKTKYxDSDIYWKNFEEKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMQIYFPYTDKQHRLTALHGTIEELLFNPEQTAEHMCALNDRKKPIIFSMARLDRVKNMTGLVEWFAKSKRLRELVNLVVVAGDIDPSKSKDREEVAEIEKMHRLVKEYNLNGQFRWICAQKNRVRNGELYRYICDTRGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVDGVSGFHIDPYHGVSATERIADFFEKCKTDPSHWEKISNGGLQRIYEKYTWQIYADRLMTLSGVYGFWKYVSKLERRETRRYLEMFYSLKYRNLVKTVPLAVEESANGIEEKSTELLATNGTLVHNH
A6N837_______________MVAAAITHALSSRERVEDMLSEHRNEIVSLLSRYVAEGKKILQPHQLLDGLEEVIGKNVELESLRHGLFGEVLRSTQEAIVLPPWIALAVRPRPGVWEYVRVNVDELAAEQLSVAEYLEFKEHLVNGSVKDDYVLELDFEPFNASFPRPTRPSSIGSGVQFLNRHLSSRLFRDKESMQPLLDFLRAHKYRGQKLMLNERIQSLPGLRSALVKTEEHLKKFPKDTPYAEFEYKLQELGLEKGWGENAEHALDTIHLLLEILQAPDPSNLETFLGRVPMVFNVVILSPHGYFGQANVLGMPDHPVDRLCIYLIN-VAPLENEMLLRIKQQGLDITPEIIVVTRLIPEAHGTTCNQRLEKISGTQHSRILRVPFRTEKGVVRDWVSRFDVWPYLERFSEDVTNEIAVELKGQPDLIIGNYSDGNLVASLMAHKQGITQCNIAHALEKTKYxDSDIYWKNFEEKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHGTIEELLFNPEQTAEHMCALNDRKKPIIFSMARLDRVKNMTGLVEWFAKSKRLRELVNLVVVAGDIDPSKSKDREEVAEIEKMHRLVKEYNLNGQFRWICAQKNRVRNGELYRYICDTRGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVDGVSGFHIDPYHGVSATERIADFFEKCKTDPSHWEKISNGGLQRIYEKYTWQIYADRLMTLSGVYGFWKYVSKLERRETRRYLEMFYSLKYRNLVKTVPLAVEESVNGIEEKSTELLATNGTLVHNH

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
251		83		16	0.994512
516		88	11		0.923564
757		75		25	0.996473
815	12	87			0.992554
816	12	87			0.992554
818		87	12		0.992554
819			87	12	0.992554
1018	88			11	0.923564
1019			88	11	0.923564
1048	16		83		0.994512
1049	83		16		0.994512
1050	83		16		0.994512
1084	14	85			0.993533
1086			14	85	0.993533
1791		90		10	0.999898
1875	86			13	0.999973
1877			13	86	0.999973
1878			13	86	0.999973
1985	20	80			0.999996
2005		11		88	0.923564
2006	88	11			0.923564
2206			88	11	0.923564
2523	5	94			0.998397
2813		2		97	0.917783
2936	3			88	0.999262
2959		16		83	0.999994
2960	18		81		0.999999
2961			81	18	0.999999
2962	81			18	0.999999
2975		33		66	0.99834
3135			81	18	1.0
3179	42		57		1.0
3212	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain