SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12794

Length: 2755 nt

UniGene Fasta

>sp_v3.0_unigene12794
TTGCGTAGTTGACTGTTCGCAAAACGCGCTAGAAAATCTAGTCTCCATGGGCCAGGTCACTGGTATGAAACTTCAAAACCATAAGTCATTCCAAGTCAGGCTCCTGGCTCACGCCATTCAGACGATGCGAGGAGCTGATAACGTCTTGGCTCATAAAACCCTTGCCTGCCGAACTCCTCGCGACCTACGCAGATCCTAAGAGAATAACATCAGGGATCTGGTCCGTGACGGACCCTCCGAATTGAGGAGGAGGGTTTCAAAAAGTATACTTTTAAGAAGCAATGGTCCGCCATCGATCCTCGTACTCTTCTTTTTCCAGATGGCGGTTTCTACATCCCTCGTATTACCTTAAACGGCCCCGTCGGCTGGCCCTCCTATGCATTCTATTCGTGTCCGCAACCTTCCTCGTTTGGGATCGACAAACCCTCGCACGGGAGCATGAGGCTGAAATGGCAAAGCTGATTGAAGAAAAGGATCAGTTACAGAATCAGTTACAGGAGCTTGTGCAGTCCCTGGAAACTAAAGGAAAACACATTGATCATCCAATGAAACAGGAAGGCACTGAGCAGCAGAAAATATTTTATGATGATGCTGTTAATGTCGAAAGACGAAATAAAGTAAAGGCAGCCATGGTACATGCCTGGTCCTCATATGAGAAGTATGCATGGGGCTTTGATGAACTTCAGCCACAGTCAAGGAGTGGAGTGAATAACTTCGGAGGTCTTGGGGCATCCATTATAGATTCTCTGGACACATTGTACATAATGGGATTAGATGAGCAGTTTCAGAAAGCGAAAGGATGGGTCACCGACTCTCTAGACTTCAACAAAGATGTTGTTGCAAGTGTTTTTGAGACTACAATAAGAGTAGTAGGAGGGCTTCTCAGTGCATATGACCTGGCAGGAGATAGTATCTTTCTGGAAAGAGCAAAACAGATTGCAGATAGGTTGCTGCCTGCTTGGAACACACCATCAGGAATACCTTACAACGCAATTAATTTGGTTCATGGAAATGCACATAATCCTGGATGGACAGGGGGGGCAAGTATACTGGCAGACTCTGGAACAGAGCAAGTGGAATTTATTGCCCTTTCCCAAAGAACTGGAGATCCCAAGTACCAGGAAAAGGTTGAAAATGTAATCAAGAGACTGCAGGCAACTTTTCCTGATGATGGATTACTTCCAATATATATAAACCCTAATTCTGGGCATGCTGAAACTTACTCCAAGGTTACTTTTGGTGCTATGGGTGACAGCTTTTATGAGTACTTACTGAAGGTATGGATCCAAGGCAACAAAACGGATGGTGTGAAGCACTACAGAGAGATGTGGGAAAGGTCCATGCAAGGATTAATGAAATTGATTAAGAAATCAAGTCCTTCTTCATACACTTATATTGCAGAGCGGTCTGGTAGTGCCTTGATAGACAAGATGGATGAGCTTGCATGCTTTACTCCTGGTATGCTTGCTCTTGGAGCTTCTACTGATGATACAGATAAAGCAGCAGAGTATCTTTCCCTTGCAGAGGAGCTTACTTGGACATGCTATAACTTTTATAACTCAACTCGGACAAAGCTGGCTGGAGAAAACTACATTTTCCATGAAGGAGAGGATATGGTGGTTGGCACATCCTGGAACATTATGAGGCCTGAAACTATTGAGTCACTCATGTACCTTTGGCGAATTACTGGAAATGAAACATATAGGGAGTGGGGATGGGATATATTTCAAGCATTTGAAAAACAAGTTCGTATCGATTCTGGCTACGTGGGACTTAGAGATGTGAATAGCGGTGAAAAGGATGATATGATGCAAAGCTTTTTTCTTGCCGAAACGTTGAAATACTTGTACCTTCTTTTCTCACCACCATCTGTTATTCCTCTTGATCAGTGGGTTTTTAATACTGAAGCTCATCCGATCAAAATCGTTCCACGATTAGATTCAGTGGCAAATTTTGGGGTTCAACAAGATAGTCAGCAAACAGAACAAGTTAAATCTGACCAGAGTTCACGTCATGGGAGGTTCGAAACAATTGGCAGGATCAAGAACAATATATTGGAAAGGACAAAACACCGGGAGCGGTTATTGGGCAGAAAAGAAGGTCGAATATTAACTTCCACAGATATTTAGGAGCGCTAATTTATTATTATTATCGCACAATATTGGGTCTGGCTACAATATTCAGTCCGGCCTCTGCAATGATACTTGGAAAGGAAAATTAGTTTACTTCCGTCTGAATTTCAAGTTAAAAAAAGGCGACCTTCATACAATGTGACGGAGGTATTGATAAGTTCTCCACAAGGCATATATGGGCAATTGATTTTGCCTAGCCCAAATTCCTATTCAGGCTTGCATATTTCTAAAAGATGCACTATTTTTTGTCCGAGTGTAAGTTTTGAATTCATTGTAACATTCAGCAATATTAATTCAGGGGTAGCATTTCTGGTAGTTTGTGGTGTTTCTAAAATGCATTTATGTTTTTATCATGCGGCCAGATGGTAGAGGCTGAGATTCTAGAAATGCACCCTTTTACACTTGAGTTCCAGTTTAGGATCTTGCTATATTATCTTGGATATTGCGACTTGCAAAGTGATGATTATTCAGTTTGTTCTGAAATATGCTTTGCATATCCTGGAATATATAAAATTTGACTGTATCCTGAGATGATAGACGTTTTAGTGTAGTTCACATGCCAGGTTAAAATCCATGTAATTGATCTTGCCTATCCTGAGGTGCAAAATCATTCATCTTTTTCT

Ace file of the UniGene sp_v3.0_unigene12794

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine max]	-	-	0.0	66%
FL-Next	sp=Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Sma3	Mannosyl-oligosaccharide 1,2-alpha-mannosidase	-	-	7.448e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mannosyl-oligosaccharide 1,2-alpha-mannosidase.	EC:3.2.1.113	-	1.677e-27	-

Source	KEGGs	Term	e value	Identity
Sma3	N-Glycan biosynthesis	00510	1.677e-27	%
Sma3	Various types of N-glycan biosynthesis	00513	1.677e-27	%
Sma3	Metabolic pathways	01100	1.677e-27	%

Source	Gene names
Sma3	At1g30000; At1g30000/T1P2.10; At1g51590; At3g21160; F19C24.18; F5D21.1; GSVIVT00006784001; GSVIVT00008672001; GSVIVT00029548001; GSVIVT00029563001; GSVIVT00029564001; MICPUCDRAFT_18963; MICPUN_109216; Man1; OAM1; OSIGBa0113I13.2; OSJNBa0035M09.7; OSJNBb00

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	GO:0004571	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 47	IPR001382	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G51590.1	MNS1, MANIB alpha-mannosidase 1 chr1:19128315-19132132 REVERSE LENGTH=560	70%
RefSeq	Arabidopsis thaliana	NP_175570.1	mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002310939.1	predicted protein, partial [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9C512

Fln msg: your sequence is longer than subject: 616 - 560

Fln protein: MVRHRSSYSSFSRWRFLHPSYYLKRPRRLALLCILFVSATFLVWDRQTLAREHEAEMAKLIEEKDQLQNQLQELVQSLETKGKHIDHPMKQEGTEQQKIFYDDAVNVERRNKVKAAMVHAWSSYEKYAWGFDELQPQSRSGVNNFGGLGASIIDSLDTLYIMGLDEQFQKAKGWVTDSLDFNKDVVASVFETTIRVVGGLLSAYDLAGDSIFLERAKQIADRLLPAWNTPSGIPYNAINLVHGNAHNPGWTGGASILADSGTEQVEFIALSQRTGDPKYQEKVENVIKRLQATFPDDGLLPIYINPNSGHAETYSKVTFGAMGDSFYEYLLKVWIQGNKTDGVKHYREMWERSMQGLMKLIKKSSPSSYTYIAERSGSALIDKMDELACFTPGMLALGASTDDTDKAAEYLSLAEELTWTCYNFYNSTRTKLAGENYIFHEGEDMVVGTSWNIMRPETIESLMYLWRITGNETYREWGWDIFQAFEKQVRIDSGYVGLRDVNSGEKDDMMQSFFLAETLKYLYLLFSPPSVIPLDQWVFNTEAHPIKIVPRLDSVANFGVQQDSQQTEQVKSDQSSRHGRFETIGRIKNNILERTKHRERLLGRKEGRILTSTDI*

Protein Length: 617

Fln nts: TTGCGTAGTTGACTGTTCGCAAAACGCGCTAGAAAATCTAGTCTCCATGGGCCAGGTCACTGGTATGAAACTTCAAAACCATAAGTCATTCCAAGTCAGGCTCCTGGCTCACGCCATTCAGACGATGCGAGGAGCTGATAACGTCTTGGCTCATAAAACCCTTGCCTGCCGAACTCCTCGCGACCTACGCAGATCCTAAGAGAATAACATCAGGGATCTGGTCCGTGACGGACCCTCCGAATTGAGGAGGAGGGTTTCAAAAAGTATACTTTTAAGAAGCA_-_ATGGTCCGCCATCGATCCTCGTACTCTTCTTTTTCCAGATGGCGGTTTCTACATCCCTCGTATTACCTTAAACGGCCCCGTCGGCTGGCCCTCCTATGCATTCTATTCGTGTCCGCAACCTTCCTCGTTTGGGATCGACAAACCCTCGCACGGGAGCATGAGGCTGAAATGGCAAAGCTGATTGAAGAAAAGGATCAGTTACAGAATCAGTTACAGGAGCTTGTGCAGTCCCTGGAAACTAAAGGAAAACACATTGATCATCCAATGAAACAGGAAGGCACTGAGCAGCAGAAAATATTTTATGATGATGCTGTTAATGTCGAAAGACGAAATAAAGTAAAGGCAGCCATGGTACATGCCTGGTCCTCATATGAGAAGTATGCATGGGGCTTTGATGAACTTCAGCCACAGTCAAGGAGTGGAGTGAATAACTTCGGAGGTCTTGGGGCATCCATTATAGATTCTCTGGACACATTGTACATAATGGGATTAGATGAGCAGTTTCAGAAAGCGAAAGGATGGGTCACCGACTCTCTAGACTTCAACAAAGATGTTGTTGCAAGTGTTTTTGAGACTACAATAAGAGTAGTAGGAGGGCTTCTCAGTGCATATGACCTGGCAGGAGATAGTATCTTTCTGGAAAGAGCAAAACAGATTGCAGATAGGTTGCTGCCTGCTTGGAACACACCATCAGGAATACCTTACAACGCAATTAATTTGGTTCATGGAAATGCACATAATCCTGGATGGACAGGGGGGGCAAGTATACTGGCAGACTCTGGAACAGAGCAAGTGGAATTTATTGCCCTTTCCCAAAGAACTGGAGATCCCAAGTACCAGGAAAAGGTTGAAAATGTAATCAAGAGACTGCAGGCAACTTTTCCTGATGATGGATTACTTCCAATATATATAAACCCTAATTCTGGGCATGCTGAAACTTACTCCAAGGTTACTTTTGGTGCTATGGGTGACAGCTTTTATGAGTACTTACTGAAGGTATGGATCCAAGGCAACAAAACGGATGGTGTGAAGCACTACAGAGAGATGTGGGAAAGGTCCATGCAAGGATTAATGAAATTGATTAAGAAATCAAGTCCTTCTTCATACACTTATATTGCAGAGCGGTCTGGTAGTGCCTTGATAGACAAGATGGATGAGCTTGCATGCTTTACTCCTGGTATGCTTGCTCTTGGAGCTTCTACTGATGATACAGATAAAGCAGCAGAGTATCTTTCCCTTGCAGAGGAGCTTACTTGGACATGCTATAACTTTTATAACTCAACTCGGACAAAGCTGGCTGGAGAAAACTACATTTTCCATGAAGGAGAGGATATGGTGGTTGGCACATCCTGGAACATTATGAGGCCTGAAACTATTGAGTCACTCATGTACCTTTGGCGAATTACTGGAAATGAAACATATAGGGAGTGGGGATGGGATATATTTCAAGCATTTGAAAAACAAGTTCGTATCGATTCTGGCTACGTGGGACTTAGAGATGTGAATAGCGGTGAAAAGGATGATATGATGCAAAGCTTTTTTCTTGCCGAAACGTTGAAATACTTGTACCTTCTTTTCTCACCACCATCTGTTATTCCTCTTGATCAGTGGGTTTTTAATACTGAAGCTCATCCGATCAAAATCGTTCCACGATTAGATTCAGTGGCAAATTTTGGGGTTCAACAAGATAGTCAGCAAACAGAACAAGTTAAATCTGACCAGAGTTCACGTCATGGGAGGTTCGAAACAATTGGCAGGATCAAGAACAATATATTGGAAAGGACAAAACACCGGGAGCGGTTATTGGGCAGAAAAGAAGGTCGAATATTAACTTCCACAGATATTTAG___GAGCGCTAATTTATTATTATTATCGCACAATATTGGGTCTGGCTACAATATTCAGTCCGGCCTCTGCAATGATACTTGGAAAGGAAAATTAGTTTACTTCCGTCTGAATTTCAAGTTAAAAAAAGGCGACCTTCATACAATGTGACGGAGGTATTGATAAGTTCTCCACAAGGCATATATGGGCAATTGATTTTGCCTAGCCCAAATTCCTATTCAGGCTTGCATATTTCTAAAAGATGCACTATTTTTTGTCCGAGTGTAAGTTTTGAATTCATTGTAACATTCAGCAATATTAATTCAGGGGTAGCATTTCTGGTAGTTTGTGGTGTTTCTAAAATGCATTTATGTTTTTATCATGCGGCCAGATGGTAGAGGCTGAGATTCTAGAAATGCACCCTTTTACACTTGAGTTCCAGTTTAGGATCTTGCTATATTATCTTGGATATTGCGACTTGCAAAGTGATGATTATTCAGTTTGTTCTGAAATATGCTTTGCATATCCTGGAATATATAAAATTTGACTGTATCCTGAGATGATAGACGTTTTAGTGTAGTTCACATGCCAGGTTAAAATCCATGTAATTGATCTTGCCTATCCTGAGGTGCAAAATCATTCATCTTTTTCT

Fln Alignment:

Contig12794___FLHPSYYLKRPRRLALLCILFVSATFLVWDRQTLAREHEAEMAKLIEEKDQLQNQLQELVQSLETKGKHIDHPMKQEGTEQQKIFYDDAVNVERRNKVKAAMVHAWSSYEKYAWGFDELQPQSRSGVNNFGGLGASIIDSLDTLYIMGLDEQFQKAKGWVTDSLDFNKDVVASVFETTIRVVGGLLSAYDLAGDSIFLERAKQIADRLLPAWNTPSGIPYNAINLVHGNAHNPGWT-GGASILADSGTEQVEFIALSQRTGDPKYQEKVENVIKRLQATFPDDGLLPIYINPNSGHAETYSKVTFGAMGDSFYEYLLKVWIQGNKTDGVKHYREMWERSMQGLMKLIKKSSPSSYTYIAERSGSALIDKMDELACFTPGMLALGASTDDTDKAAEYLSLAEELTWTCYNFYNSTRTKLAGENYIFHEGEDMVVGTSWNIMRPETIESLMYLWRITGNETYREWGWDIFQAFEKQVRIDSGYVGLRDVNSGEKDDMMQSFFLAETLKYLYLLFSPPSVIPLDQWVFNTEAHPIKIVPRLD
Q9C512_______________YLNPAYYLRRPRRLALLFIVFVSVSMLVWDRINLAREHEVEVFKLNEEVSRLEQMLEELNGGVGNK------PLKT-----LKDAPEDPVDKQRRQKVKEAMIHAWSSYEKYAWGKDELQPRTKDGTDSFGGLGATMVDSLDTLYIMGLDEQFQKAREWVASSLDFDKDYDASMFETTIRVVGGLLSAYDLSGDKMFLEKAKDIADRLLPAWNTPTGIPYNIINLRNGNAHNPSWAAGGDSILADSGTEQLEFIALSQRTGDPKYQQKVEKVITELNKNFPADGLLPIYINPDNANP-SYSTTTFGAMGDSFYEYLLKVWVQGNKTSAVKPYRDMWEKSMKGLLSLVKKSTPSSFTYICEKNGNNLIDKMDELACFAPGMLALGASGYGPDEEKKFLSLAGELAWTCYNFYQSTPTKLAGENYFFTAGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYQEWGWNIFQAFEKNSRVESGYVGLKDVNTGAKDNKMQSFFLAETLKYLYLLFSPSSVISLDEWVFNTEAHPLKIVARND

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
177	33	66			0.997452
179		66	33		0.997452
181		66	33		0.997452
207	87		12		0.992554
208		87		12	0.992554
308		14		85	0.993533
350		16		83	0.994512
506	25		75		0.996473
1396	80			20	0.995493
1430	80		20		0.995493
1740	88			11	0.923564
1741	88		11		0.923564
1742	88		11		0.923564
1743	88		11		0.923564
1819		15		69	0.999985
1945		12	87		0.999964
2006		11	88		0.999952
2166	80		20		0.995493
2385	10		90		0.90298
2396		14		85	0.999981
2660		18		81	0.999994

SSRs (tot: 1)

Start position	End position	Sequence	Length
2140	2152	TTA TTA TTA TTA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain