SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12713

Length: 2505 nt

UniGene Fasta

>sp_v3.0_unigene12713
CGGCGTAACCAGGGCTATCAACGCAGAGTTTTCCGCAGCAATAAATCGTCGTGACTCTTGGCTGTCACTCGGGATTCTCCCAGTCTGCACTCTGAAAAATGATTCTGTCATTTCCCCAATTCTCCATGCCCACAGCTGGATTGACTCGGGATATTAAGTGAATACCTGTGTAAACAGCTGGTACCCACATTCCCCACCAATCACTAATTACGCCACTCCTTCGGCCACCATTACTACTTCCCGTCTCCCACCGTTGTCATCAAATCTATCTATCGCTCTTCACACTGCAATTCCTTGATCTCATACATACTCTTTGGATAATCTGCTACTGTTGGTGATTCTTATGTTTTTCTGTGGATTCAATGCACATAGCCTTTTAATCCCATCCAAGAGAAGTTCAGTCCTAATCAAAAGTCCGTTCTCCATATCCTTAAAAGTCATATGCTCTGCCAGTTTCCTGTTCTAGCAAAAGGGCTAATACCCACTTAATCAGTAGTAGAGTTTCAGTTAAAAAGGCTTCCTATATGGCCCAGAAATCTATTTATTAGAACATATTTGCACCAGGTTGTTACTACATCATATTCTTTTGCAGCCCAAATGCATCCCATGATGTACCAACTAGCATCATTTTTCCTATCTGCATTGCTTCTGGCAGAGGTTTTTTCTTATTCTGCAAGTGCCAAAGAGCATTCACATGACTCTCTGAGGCTCAGGCTTGTTCATAAAAACTCCCCCCATTCTCCCTTGAGGAAAACATTTTCTTCCCGACGAGAGCACCTAGAATACATTCTTCATGAAGATTCGATACGAGCTAAGGGCTTTCAACGAGTCGTGGAACAACATCTCCCTCGACGTCCAGAGTTCGAGGCTTCATCAATAGTCAAACGATCAGCTCATATCCACGGAAAGGTCTACAAGGCCCACGTAATCTCAGGCGCTTCGGCAGGCTCTGGGCAGTACTTTGTGGACTTCTACATTGGCACCCCACCTCAGAAGTTCATGCTGATTGCAGATACGGGCAGTGATCTTCTTTGGGTACGTTGTTCTGCTTGTAGAAAATGTCTTAGAAAGCCTGGATCGGCTTTCCTAGCCAGGCATTCCTCAAGTTTTTCACCAATACATTGTTATGCACCTGCCTGTCAGCTGGTTCCCCCACCCCAAAATTCTTCATGTAGCCTCACACGCCTTCACAGTTCCTGTATGTATGATTATGTTTATGCAGACCTGTCTGATAGCACTGGGATTTTCTCCCATGAGACGGCAACCCTTAACACAAGTTCAGGGTTCACTACCAGAATAAGGAATCTGGCTTTTGGGTGTGGGATTAGAAGCTCAGGGCCTAGTTTTACAGGCCTATCATTCAATGGGGCACATGGGGTGATTGGGTTGGGGAAGGGTGCTACATCGTTCGTTTCACAGATTGGTAGGACCGTTGGAGACAAGTTCTCCTATTGCTTGGTGGACTACACTATTTCCCCACCAAAGACCAGTTATCTTGTGTTGGGGCAGAACCCTGTGAGACCTGCATTGAGGAGAGCCATGAGCTATACGCCCTTTTTGAGGAATAGTTTTGCAGAGACCTTCTATTATGTTGGGATTGAGCAGATTTGGGTTGCAGGAGCACTTCTTCCCATTCGTCCCAAGGTTTGGAATATTGATGCTCAGGGCAATGGGGGCACTGTCATTGATTCCGGTACAACCTTGACCTACTTTGTCCGGCCAGCGTACAAGAAAATCCTGGCAGCATTCCAGAAGGCTGTTGAGTATCCAAGAGTTAGGGCAATGCAGAACTTAGATCTGTGCTTCAATGTCTCAGGTATTGCCATGCCCAAATTACCTAAGCTTACTATTGTTTTGAAGGGCAATGCTCGGTTTGAGCCTCCTCCTCCAAACTATTTCATCGATGTTGTTGACAATGTCAAATGCTTGGCATTACAGGGTGTGAATTCCCCTTCTGCTTTCTCCATTCTAGGTAATCTTTTGCAGCAGGATTTTTATATTCAGTATGATAGAGAGAATTCTGTACTTGGGTTTGCTCATACTGACTGCTCCTTATCCTAGAGCTTTTGTTTCGTAGTGTTCATCTTGTTTGATTTATCCATCTCAATAGTAAAACAAACAAATCTTAGTTTTCTCTGGTGATTCTGGCCATGCTTTATGGTCATACTTCCCTAGCCAAGGAATCTATCAGGCAATAAGTCTGTCTGATTGGCTTATATTGGTTTTACACATTGTTTTGTATTTGAATCTCAATGCTGAATACCAAAGCTGCTATATGGATGTTGATGATGATTGTAACTCCATTGGCCTAATTCGGCATTATATAAAAGTTTTTACGGTGTTTCTGAGTGTAGCAAGATATCTGGCAACTTATGTGATGTCTTGCCATTTGAGTGATGAAGAAAGAATGCAATGTTCTTACTTGCTTTGAAATGCATAGATTGTTTAAGGGCTTGCAATTTGAAATCAATAAAAGCAGGCCTAAGCTCAATTGAACTTCTGAAC

Ace file of the UniGene sp_v3.0_unigene12713

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Basic 7S globulin 2 small subunit, putative n=1 Tax=Ricinus communis RepID=B9SEI2_RICCO	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Sma3	Basic 7S globulin 2 small subunit, putative	-	-	8.559e-08	-

Source	Gene names
Sma3	At2g42980; At3g25700; GSVIVT00030279001; Os02g0314600; OsI_06935; OsJ_06441; P0705A04.34; PHYPADRAFT_121919; PHYPADRAFT_196312; PHYPADRAFT_201465; POPTRDRAFT_564485; RCOM_0705030; RCOM_1192560;

Source	GOs	Term	Type	e value	Identity
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G25700.1	Eukaryotic aspartyl protease family protein chr3:9358937-9360295 FORWARD LENGTH=452	51%
RefSeq	Arabidopsis thaliana	NP_189198.1	aspartyl protease family protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002311432.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXW9

Fln msg:

Fln protein: MHPMMYQLASFFLSALLLAEVFSYSASAKEHSHDSLRLRLVHKNSPHSPLRKTFSSRREHLEYILHEDSIRAKGFQRVVEQHLPRRPEFEASSIVKRSAHIHGKVYKAHVISGASAGSGQYFVDFYIGTPPQKFMLIADTGSDLLWVRCSACRKCLRKPGSAFLARHSSSFSPIHCYAPACQLVPPPQNSSCSLTRLHSSCMYDYVYADLSDSTGIFSHETATLNTSSGFTTRIRNLAFGCGIRSSGPSFTGLSFNGAHGVIGLGKGATSFVSQIGRTVGDKFSYCLVDYTISPPKTSYLVLGQNPVRPALRRAMSYTPFLRNSFAETFYYVGIEQIWVAGALLPIRPKVWNIDAQGNGGTVIDSGTTLTYFVRPAYKKILAAFQKAVEYPRVRAMQNLDLCFNVSGIAMPKLPKLTIVLKGNARFEPPPPNYFIDVVDNVKCLALQGVNSPSAFSILGNLLQQDFYIQYDRENSVLGFAHTDCSLS*

Protein Length: 489

Fln nts: CGGCGTAACCAGGGCTATCAACGCAGAGTTTTCCGCAGCAATAAATCGTCGTGACTCTTGGCTGTCACTCGGGATTCTCCCAGTCTGCACTCTGAAAAATGATTCTGTCATTTCCCCAATTCTCCATGCCCACAGCTGGATTGACTCGGGATATTAAGTGAATACCTGTGTAAACAGCTGGTACCCACATTCCCCACCAATCACTAATTACGCCACTCCTTCGGCCACCATTACTACTTCCCGTCTCCCACCGTTGTCATCAAATCTATCTATCGCTCTTCACACTGCAATTCCTTGATCTCATACATACTCTTTGGATAATCTGCTACTGTTGGTGATTCTTATGTTTTTCTGTGGATTCAATGCACATAGCCTTTTAATCCCATCCAAGAGAAGTTCAGTCCTAATCAAAAGTCCGTTCTCCATATCCTTAAAAGTCATATGCTCTGCCAGTTTCCTGTTCTAGCAAAAGGGCTAATACCCACTTAATCAGTAGTAGAGTTTCAGTTAAAAAGGCTTCCTATATGGCCCAGAAATCTATTTATTAGAACATATTTGCACCAGGTTGTTACTACATCATATTCTTTTGCAGCCCAA_-_ATGCATCCCATGATGTACCAACTAGCATCATTTTTCCTATCTGCATTGCTTCTGGCAGAGGTTTTTTCTTATTCTGCAAGTGCCAAAGAGCATTCACATGACTCTCTGAGGCTCAGGCTTGTTCATAAAAACTCCCCCCATTCTCCCTTGAGGAAAACATTTTCTTCCCGACGAGAGCACCTAGAATACATTCTTCATGAAGATTCGATACGAGCTAAGGGCTTTCAACGAGTCGTGGAACAACATCTCCCTCGACGTCCAGAGTTCGAGGCTTCATCAATAGTCAAACGATCAGCTCATATCCACGGAAAGGTCTACAAGGCCCACGTAATCTCAGGCGCTTCGGCAGGCTCTGGGCAGTACTTTGTGGACTTCTACATTGGCACCCCACCTCAGAAGTTCATGCTGATTGCAGATACGGGCAGTGATCTTCTTTGGGTACGTTGTTCTGCTTGTAGAAAATGTCTTAGAAAGCCTGGATCGGCTTTCCTAGCCAGGCATTCCTCAAGTTTTTCACCAATACATTGTTATGCACCTGCCTGTCAGCTGGTTCCCCCACCCCAAAATTCTTCATGTAGCCTCACACGCCTTCACAGTTCCTGTATGTATGATTATGTTTATGCAGACCTGTCTGATAGCACTGGGATTTTCTCCCATGAGACGGCAACCCTTAACACAAGTTCAGGGTTCACTACCAGAATAAGGAATCTGGCTTTTGGGTGTGGGATTAGAAGCTCAGGGCCTAGTTTTACAGGCCTATCATTCAATGGGGCACATGGGGTGATTGGGTTGGGGAAGGGTGCTACATCGTTCGTTTCACAGATTGGTAGGACCGTTGGAGACAAGTTCTCCTATTGCTTGGTGGACTACACTATTTCCCCACCAAAGACCAGTTATCTTGTGTTGGGGCAGAACCCTGTGAGACCTGCATTGAGGAGAGCCATGAGCTATACGCCCTTTTTGAGGAATAGTTTTGCAGAGACCTTCTATTATGTTGGGATTGAGCAGATTTGGGTTGCAGGAGCACTTCTTCCCATTCGTCCCAAGGTTTGGAATATTGATGCTCAGGGCAATGGGGGCACTGTCATTGATTCCGGTACAACCTTGACCTACTTTGTCCGGCCAGCGTACAAGAAAATCCTGGCAGCATTCCAGAAGGCTGTTGAGTATCCAAGAGTTAGGGCAATGCAGAACTTAGATCTGTGCTTCAATGTCTCAGGTATTGCCATGCCCAAATTACCTAAGCTTACTATTGTTTTGAAGGGCAATGCTCGGTTTGAGCCTCCTCCTCCAAACTATTTCATCGATGTTGTTGACAATGTCAAATGCTTGGCATTACAGGGTGTGAATTCCCCTTCTGCTTTCTCCATTCTAGGTAATCTTTTGCAGCAGGATTTTTATATTCAGTATGATAGAGAGAATTCTGTACTTGGGTTTGCTCATACTGACTGCTCCTTATCCTAG___AGCTTTTGTTTCGTAGTGTTCATCTTGTTTGATTTATCCATCTCAATAGTAAAACAAACAAATCTTAGTTTTCTCTGGTGATTCTGGCCATGCTTTATGGTCATACTTCCCTAGCCAAGGAATCTATCAGGCAATAAGTCTGTCTGATTGGCTTATATTGGTTTTACACATTGTTTTGTATTTGAATCTCAATGCTGAATACCAAAGCTGCTATATGGATGTTGATGATGATTGTAACTCCATTGGCCTAATTCGGCATTATATAAAAGTTTTTACGGTGTTTCTGAGTGTAGCAAGATATCTGGCAACTTATGTGATGTCTTGCCATTTGAGTGATGAAGAAAGAATGCAATGTTCTTACTTGCTTTGAAATGCATAGATTGTTTAAGGGCTTGCAATTTGAAATCAATAAAAGCAGGCCTAAGCTCAATTGAACTTCTGAAC

Fln Alignment:

Contig12713___LRLRLVHKNSPHSPLRKTFSSRREHLEYILHEDSIRAKGFQRVVEQHLPRRPEFEASSIVKRSAHIHGKVYKAHVISGASAGSGQYFVDFYIGTPPQKFMLIADTGSDLLWVRCSACRKCLRKPGSAFLARHSSSFSPIHCYAPACQLVPPPQNSSCSLTRLHSSCMYDYVYADLSDSTGIFSHETATLNTSSGFTTRIRNLAFGCGIRSSGPSFTGLSFNGAHGVIGLGKGATSFVSQIGRTVGDKFSYCLVDYTISPPKTSYLVLGQNPVRPALRRAMSYTPFLRNSFAETFYYVGIEQIWVAGALLPIRPKVWNIDAQGNGGTVIDSGTTLTYFVRPAYKKILAAFQKAVEYPRVRAMQ-NLDLCFN-VSGIAMPKLPKLTIVLKGNARFEPPPPNYFIDVVDNVKCLALQGVNSPSAFSILGNLLQQDFYIQYDRENSVLGFAHTDC
A9NXW9_______________LRIDLVRTDSPLSPFSPGNISSTER--------------FKRAIKRSQDRLEKLQMS--VDEVKAVEAPVY---------AGNGEFLMKMAIGTPSLSFSAILDTGSDLTWTQCKPCTDCYPQPTPIYDPSQSSTYSKVPCSSSMCQALP---MYSCS----GANCEYLYSYGDQSSTQGILSYESFTLTSQS-----LPHIAFGCGQENEGG-----GFSQGGGLVGFGRGPLSLISQLGQSLGNKFSYCLVSITDSPSKTSPLFIGKTASLNA--KTVSSTPLVQSRSRPTFYYLSLEGISVGGQLLDIADGTFDLQLDGTGGVIIDSGTTVTYLEQSGYDVVKKAVISSINLPQVDGSNIGLDLCFEPQSGSSTSHFPTITFHFEG-ADFNLPKENYIYTDSSGIACLAMLPSN---GMSIFGNIQQQNYQILYDNERNVLSFAPTVC

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
719			11	88	0.923564
829	20		80		0.995493
1002	16		83		0.999991
1100	12	87			0.992554
1103		87		12	0.992554
1133	14	85			0.993533
1135			85	14	0.993533
1179	14	85			0.993533
1181		85		14	0.993533
1182	85		14		0.993533
1196	12	87			0.992554
1197	12	87			0.992554
1207	12		87		0.992554
1370	25		75		0.996473
1432		66	33		1.0
1493			85	14	0.993533
1542		57	42		1.0
1737	85		14		0.993533
2130	10			90	0.90298
2275	10		90		0.90298
2277	10			90	0.90298
2278	90			10	0.90298
2302	77	22			0.999999

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain