SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12413

Length: 992 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene12413 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative 1,3-beta glucanase [Oryza sativa Japonica Group] dbj\|BAD10703.1\| putative 1,3-beta glucanase [Oryza sativa Japonica Group]	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Putative Glucan 1,3-beta-glucosidase	-	-	7.91e-09	-

Source	Gene names
Sma3	GSVIVT00011447001; GSVIVT00011902001; GSVIVT00011904001; GSVIVT00015266001; LOC_Os10g22520; LOC_Os10g22570; OJ1003C07.1; OJ1111_H02.28; OJ1208D02.11; OJ1208D02.5; OSJNBa0037H06.1; Os05g0244500; Os08g0484100; Os10g0370500; Os10g0370800; OsI_19136; OsI_1913

Source	GOs	Term	Type	Identity
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ	IPR013114	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002310872.1	predicted protein, partial [Populus trichocarpa]	0.0	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKR6

Fln msg: your sequence is shorter than subject: 230 - 511

Fln protein: IDLHAAPGSQNGDEHSSSRDGYIEWADSQENIDTTLSTIDFLASRYAAHPALLGIELLNEPRSSGISLNTVTAYYTQGYNIVRKYSSSAYVIMCNRIGPADPKELFQINNGLFRTVVDVHYYNLFDDSTFKHMTVQQNIDYIKNTRAQTLQSLVSANGPLIFVGEWVAEWEVQNATQSDYERYGDAQLQVYETASFGWTYWTLRSIGNRHWDFRWMVNNHYLRLPWIKI*

Protein Length: 231

Fln nts: ATCGATCTGCACGCTGCTCCAGGCTCACAAAACGGCGATGAACACAGTAGCAGCAGAGACGGATATATAGAATGGGCTGATTCACAAGAGAACATTGACACCACTTTATCCACCATTGATTTTCTTGCTTCTAGATATGCTGCACACCCTGCCCTTTTGGGCATTGAGCTGCTGAATGAGCCACGGTCCTCTGGAATCAGTTTGAACACTGTGACTGCCTACTATACACAAGGCTACAACATCGTTCGAAAGTATTCCTCCTCGGCCTATGTGATAATGTGCAACAGAATCGGCCCTGCTGATCCAAAAGAGTTGTTTCAAATCAACAATGGGTTATTCCGCACTGTAGTAGACGTGCATTACTACAATCTCTTCGACGATTCCACTTTCAAACATATGACGGTTCAGCAAAATATCGACTATATTAAAAACACGAGAGCTCAAACTCTCCAGAGCCTCGTCTCGGCAAATGGTCCGCTCATCTTTGTTGGGGAATGGGTGGCCGAGTGGGAGGTGCAGAATGCAACACAGTCAGATTATGAAAGGTACGGAGATGCACAGCTCCAAGTATACGAGACAGCTTCCTTCGGATGGACATACTGGACTCTAAGAAGCATCGGTAACAGGCACTGGGATTTTCGGTGGATGGTGAACAATCACTACCTTCGATTGCCATGGATCAAAATTTGA___TTTTTCTGTGTAATACAGCCAATGAATACGTTTCGGTGGGCATAATAATCTTGAACTTTTCTAATGTTTCTGCGCCAGCTTAGCTCAATAAATTTGGAAGGAATAATCTTTTTTATACCACCTTTGAGGTATAAAAGAGTTTGATAACCCAGCTGCCATTTAACTCAAAGCTCTTTATCTGTTATACTCAATCTATCCCGTCAATACTTATGGCGGGAGTACCATATATTTGTGTGTTAGGCCATCGATCTTAAAATAGGATATCATTGATAACGACGGTCACCTCTCCGTTTCACCTAAAA

Fln Alignment:

Contig12413___IDLHAAPGSQNGDEHSSSRDGYIEWADSQENIDTTLSTIDFLASRYAAHPALLGIELLNEPRSS------GISLNTVTAYYTQGYNIVRKYSSSAYVIMCNRIGPADPKELFQINNGLFRTVVDVHYYNLFDDSTFKHMTVQQNIDYIKNTRAQTLQSLVSANGPLIFVGEWVAEWEVQNATQSDYERYGDAQLQVYETASFGWTYWTLRSIGNRHWDFRWMVNNHYLRL
B8LKR6_______________VDLHAVPGSQNGDAHSGTRDGYLEWPNSQDNIDKSISVIDFLAGRYASNSALLGIELLNEPRASTDPNAPGVPLDTLKTYYKRGYDTIRKHSPSAYVIMCNRIGPADAKELFDINNGLTRTVVDVHYYNLYDDSTFKSMSVQQNIDYINNNRAQILQSLTSANGPLIYVGEWTNEWEYQGASMSDYQRFGKAQLQVYGTATFGWSYWTLKNVQN-HWSFEWMVQNNYLQL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
587		20		80	0.995493
603	20			80	0.995493
615		80		20	0.995493
616	20		80		0.995493
666			20	80	0.995493
798	20			80	0.995493
801		80	20		0.995493
805		20	80		0.995493
806		20	80		0.995493
809		80	20		0.995493
813		20	80		0.995493
819			16	83	0.994512
852	50	50			1.0
938	25			75	0.996473
941	25		75		0.996473
947		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain