SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12283

Length: 3129 nt

UniGene Fasta

>sp_v3.0_unigene12283
ATGGGCAACCTCAAAGTCCCCGTTCAGAGAGAGCAGAATCTCGATCTCCACTCGACAGCCTCTCTTCTCATGGCAGTGGTTCTCCTGCATTTAATGCAAGTTCCCTGCGATTGAATTACATGAGATCAGGGTTATGGAGCCGAAGACCTTCAAAGAGCAGCCTCCATCTCCAGAGAGTGGTAGAGTCCAATCATATTCAACTACCCTCGGTATGGAGTGGATCCTGAATCTCCATTCCCTGTCTCTCCTTCCTCATCTCAGAAGTCGATCCCTCCTCCTCCTGCTTCGTCGTCTTCGGCACCTGGAACGATATCATGGGAATTCTTCAACATCTTCTCTCCTCTTGCGGCTCCATATCACTTTTCAGTTGACACAGGAATGAGCCAACCATCGGAAGGAGATTCAATAGATTTAAAACATGCCAGGGACGAAGAGGGCATTCCTGATTTGGAAGATGGTGATCAGGAAGAAGAGTACATACATGATGAAACTAAGGAAGCAAATCATCTTGAGGAAAGTACATCAAAAGCTTCTTTCATTGATTCAGATAAAAGGCACTCTGAAACTGCAGCTATGGATACTGGCTTTTCTGTGGATAAGCATGTTCCAGTTTCAAGGGCCGATGGCATTACTAAAGGTCGCACTGATCCATCTGTGGAAGCAGTGGTTGAGCCAATATGTGAAGACGTTGTGGAGGGAATTAGCTCGAGATATACAGAAGAGGGGAATGAAGAAGCAGCTAAGAATGCAGCTGAGAAAGTCGATGCTTTGATGAAAGACAAACGGTTTGCAAACAAAGAAACCCTTTTAGAAAAGGAAAATCCCACTGAATTTGTTGCTCTCAGGGGTAGAAATTTCTTGAGTAGTCTAAAGAATATTGAAGATCAGTTTATCAAGGCATGCGATTCTGGCAAGGAAGTTTCTAAGATGCTTGAGGCAAATAAAGTGCACTATTATCCAGGCTTCACTGAGAAAAAGGGAAAATCGTGGAAATGCAGATTCGTAGTTCCCTGCGGCTTATCTTGTTGCATGCAACCCACAGTGCTCGAGTCCCATGAACCTCCTTCCAAGGCTCTGACTGTAACAACATGGCATCAATCTACACCATCCCATTCTTCATCATCCAAGACTCCTTTTGCTTCAAGTTCAAAGGATGATATTGATGATAGCAGTAGTGATTTCGTGGAGGACACTTGCATGATTTCCGGCAGCCATTCTTCAACTTTGGACAGACTGTATGCATGGGAGATAAAACTCTATGAGGAGGTCAAGGCAGGAGATGCTATAAGAAGAGTGTATGAAAAGAAGTGTGTTCAACTAAGGCACCAGGAATCCAAGGGAGCATCTTCTGAAGTGATTGATAAGATAAGGGCTACAATAAAAGATCTTTACTCAAGAGTCAGGGTTGCCATCGAGGCAGTTGACTCAGTATCAAAGAGAATACAAAAATTGAGGGATGAGGAACTGCAACCACAACTTATGGAGTTAATACAAGGGTTGATGAAAATGTGGGATAAAATGGGGCAATGCCATGAATTTCAGTATCATATCATCAAAGATGCAAATATTTCTGGCCGCCTTGCTGATAGTGTAATATTCAACGATTCATATCGACAGGCAACCATTCATCTTGAAAAGGAGCTACAAAACTGGCAGTCACGTTTCATGGATTGGATGGGTGCTCAAAAGGCTTATGTCCTTGCACTGCATGGATGGCTTCTGAAGTGCATCAAGCTTCCTGAACCCTCCGCAAGGGGAAGGCCAACGACATTCTCACCCCACAGAGCTGGTGCTCCACTTGTAGTTATTATCTGCAATGATTGGAGTAGAGCATTTGAAAATCTAAAGCAAGAAGTTGATGTTGTTGAGGCAATTAAAACTTTAGTTGGAAATTTACAAGCAATTTCGGCACATTGGGATGAGAATCAGAATGGAAAAGATCTTGACAGGAAGGTATCAATACGGAGGGTGGGGAGTAGGATGCTTGACACCCAAGGTCCACCACTTGATAATAAAAAGTCAAATTCCTCAAGAGCTGGTAATTCCATTGCAGATGACAAAAACTTATCTGATTCACTTAGAAAACAAGCAGAGGCGGGGTATCATAAGGTTATGCAGCAAACTCATGTTGACTACTTGAAGAAATTACAGAAAGGTTTAGAAAAAATATTTGAGCTTTTGTTTGATCTTGCTTGTAAATCCCATGAAATCTGCAAAGGCCTGCACGAAAATAGTGGAAGGGCACATTTTCCATCTGAGAATGGCAGGAGGTCATATAGTTAAGATATTTAAAGGTCATGGCATATCTTTGTAATTGGAATGCTGAAGAGTACTTTATTTGAAAATCTGTACTTTTCTGGATTTCCTTTGTGGAAACCTCAAATATACATAAGAAATTAGAATTGTAATTTGTATTTAGTTCTTAGTACTTACCACTAAGAGAAATGGGGGAGCTATGTGTTTTCCAAGACAAGGCACAGAATGATATAATGGAGGAACTTGAAATTGTACAAAATTTGTGGAAGACACTGAGGTCTGAGATTGCAAATGATGCAAGACGCTGTGGGTTTAAGTTTTGCACAATTCCTTCTTCACCTTCGTACAACAGATGGATTCGCAGGACTATTTCAGCCACATGGCAATATGTCAGAGGTTCAGTGGTTTAGATGTTTGGGCAATGAAATGTAGGAATTTACCTTGAAGCAGATCAAGTCAGTGTGCAAATTGTAAGTAAGAGTGTGGGTTTGTGAAATCTCATGTCAGTCTTATCTGCCTGTTAAAAGATATTCAGCACAAACTAGCAGGCAGGAGAGATTTCCAAGTACTGCTTAGGATCTTGTAGTAAGTAGGATCTATGCCTTTCCTTTGGAATTGGATATTGTTTTCTTTATTCCCCAAGTTCTCGAGCATAAGTAGCAATTTCATCTATGAGCCATAATCAGAGAGTCAATAAAGACTTATAATAAATTTCTTTAGTGCATCATGTCTGAATATTCTCTGCTCATGTAATTCTCAGATAAAGTTCACCCTTAGGTGAAGATTGAGTACAGTTCTCTCCATATTGTAACTTGTGGGCTGTCAGTATTTCAACCAAATTATTCAAATTTGTATGAATAAGCAAATTTTAGT

Ace file of the UniGene sp_v3.0_unigene12283

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF632 domain containing protein	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	27%

Source	Gene names
Sma3	AT4g39790; At4g39790; GSVIVT00005193001; OsI_18639; OsI_19204; OsJ_17299; OsJ_17828; OsJ_27957; POPTRDRAFT_718824; POPTRDRAFT_861927; RCOM_0662400;

Source	InterPros	Term	Type	Identity
Sma3	Pumilio RNA-binding repeat	IPR001313	-	-
Sma3	Domain of unknown function DUF632	IPR006867	-	-
Sma3	Domain of unknown function DUF630	IPR006868	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQT1

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 635 - 724

Fln protein: MSQPSEGDSIDLKHARDEEGIPDLEDGDQEEEYIHDETKEANHLEESTSKASFIDSDKRHSETAAMDTGFSVDKHVPVSRADGITKGRTDPSVEAVVEPICEDVVEGISSRYTEEGNEEAAKNAAEKVDALMKDKRFANKETLLEKENPTEFVALRGRNFLSSLKNIEDQFIKACDSGKEVSKMLEANKVHYYPGFTEKKGKSWKCRFVVPCGLSCCMQPTVLESHEPPSKALTVTTWHQSTPSHSSSSKTPFASSSKDDIDDSSSDFVEDTCMISGSHSSTLDRLYAWEIKLYEEVKAGDAIRRVYEKKCVQLRHQESKGASSEVIDKIRATIKDLYSRVRVAIEAVDSVSKRIQKLRDEELQPQLMELIQGLMKMWDKMGQCHEFQYHIIKDANISGRLADSVIFNDSYRQATIHLEKELQNWQSRFMDWMGAQKAYVLALHGWLLKCIKLPEPSARGRPTTFSPHRAGAPLVVIICNDWSRAFENLKQEVDVVEAIKTLVGNLQAISAHWDENQNGKDLDRKVSIRRVGSRMLDTQGPPLDNKKSNSSRAGNSIADDKNLSDSLRKQAEAGYHKVMQQTHVDYLKKLQKGLEKIFELLFDLACKSHEICKGLHENSGRAHFPSENGRRSYS*

Protein Length: 636

Fln nts: ATGGGCAACCTCAAAGTCCCCGTTCAGAGAGAGCAGAATCTCGATCTCCACTCGACAGCCTCTCTTCTCATGGCAGTGGTTCTCCTGCATTTAATGCAAGTTCCCTGCGATTGAATTACATGAGATCAGGGTTATGGAGCCGAAGACCTTCAAAGAGCAGCCTCCATCTCCAGAGAGTGGTAGAGTCCAATCATATTCAACTACCCTCGGTATGGAGTGGATCCTGAATCTCCATTCCCTGTCTCTCCTTCCTCATCTCAGAAGTCGATCCCTCCTCCTCCTGCTTCGTCGTCTTCGGCACCTGGAACGATATCATGGGAATTCTTCAACATCTTCTCTCCTCTTGCGGCTCCATATCACTTTTCAGTTGACACAGGA_-_ATGAGCCAACCATCGGAAGGAGATTCAATAGATTTAAAACATGCCAGGGACGAAGAGGGCATTCCTGATTTGGAAGATGGTGATCAGGAAGAAGAGTACATACATGATGAAACTAAGGAAGCAAATCATCTTGAGGAAAGTACATCAAAAGCTTCTTTCATTGATTCAGATAAAAGGCACTCTGAAACTGCAGCTATGGATACTGGCTTTTCTGTGGATAAGCATGTTCCAGTTTCAAGGGCCGATGGCATTACTAAAGGTCGCACTGATCCATCTGTGGAAGCAGTGGTTGAGCCAATATGTGAAGACGTTGTGGAGGGAATTAGCTCGAGATATACAGAAGAGGGGAATGAAGAAGCAGCTAAGAATGCAGCTGAGAAAGTCGATGCTTTGATGAAAGACAAACGGTTTGCAAACAAAGAAACCCTTTTAGAAAAGGAAAATCCCACTGAATTTGTTGCTCTCAGGGGTAGAAATTTCTTGAGTAGTCTAAAGAATATTGAAGATCAGTTTATCAAGGCATGCGATTCTGGCAAGGAAGTTTCTAAGATGCTTGAGGCAAATAAAGTGCACTATTATCCAGGCTTCACTGAGAAAAAGGGAAAATCGTGGAAATGCAGATTCGTAGTTCCCTGCGGCTTATCTTGTTGCATGCAACCCACAGTGCTCGAGTCCCATGAACCTCCTTCCAAGGCTCTGACTGTAACAACATGGCATCAATCTACACCATCCCATTCTTCATCATCCAAGACTCCTTTTGCTTCAAGTTCAAAGGATGATATTGATGATAGCAGTAGTGATTTCGTGGAGGACACTTGCATGATTTCCGGCAGCCATTCTTCAACTTTGGACAGACTGTATGCATGGGAGATAAAACTCTATGAGGAGGTCAAGGCAGGAGATGCTATAAGAAGAGTGTATGAAAAGAAGTGTGTTCAACTAAGGCACCAGGAATCCAAGGGAGCATCTTCTGAAGTGATTGATAAGATAAGGGCTACAATAAAAGATCTTTACTCAAGAGTCAGGGTTGCCATCGAGGCAGTTGACTCAGTATCAAAGAGAATACAAAAATTGAGGGATGAGGAACTGCAACCACAACTTATGGAGTTAATACAAGGGTTGATGAAAATGTGGGATAAAATGGGGCAATGCCATGAATTTCAGTATCATATCATCAAAGATGCAAATATTTCTGGCCGCCTTGCTGATAGTGTAATATTCAACGATTCATATCGACAGGCAACCATTCATCTTGAAAAGGAGCTACAAAACTGGCAGTCACGTTTCATGGATTGGATGGGTGCTCAAAAGGCTTATGTCCTTGCACTGCATGGATGGCTTCTGAAGTGCATCAAGCTTCCTGAACCCTCCGCAAGGGGAAGGCCAACGACATTCTCACCCCACAGAGCTGGTGCTCCACTTGTAGTTATTATCTGCAATGATTGGAGTAGAGCATTTGAAAATCTAAAGCAAGAAGTTGATGTTGTTGAGGCAATTAAAACTTTAGTTGGAAATTTACAAGCAATTTCGGCACATTGGGATGAGAATCAGAATGGAAAAGATCTTGACAGGAAGGTATCAATACGGAGGGTGGGGAGTAGGATGCTTGACACCCAAGGTCCACCACTTGATAATAAAAAGTCAAATTCCTCAAGAGCTGGTAATTCCATTGCAGATGACAAAAACTTATCTGATTCACTTAGAAAACAAGCAGAGGCGGGGTATCATAAGGTTATGCAGCAAACTCATGTTGACTACTTGAAGAAATTACAGAAAGGTTTAGAAAAAATATTTGAGCTTTTGTTTGATCTTGCTTGTAAATCCCATGAAATCTGCAAAGGCCTGCACGAAAATAGTGGAAGGGCACATTTTCCATCTGAGAATGGCAGGAGGTCATATAGTTAAGATATTTAAAGGTCATGGCATATCTTTGTAATTGGAATGCTGAAGAGTACTTTATTTGAAAATCTGTACTTTTCTGGATTTCCTTTGTGGAAACCTCAAATATACATAAGAAATTAGAATTGTAATTTGTATTTAGTTCTTAGTACTTACCACTAAGAGAAATGGGGGAGCTATGTGTTTTCCAAGACAAGGCACAGAATGATATAATGGAGGAACTTGAAATTGTACAAAATTTGTGGAAGACACTGAGGTCTGAGATTGCAAATGATGCAAGACGCTGTGGGTTTAAGTTTTGCACAATTCCTTCTTCACCTTCGTACAACAGATGGATTCGCAGGACTATTTCAGCCACATGGCAATATGTCAGAGGTTCAGTGGTTTAGATGTTTGGGCAATGAAATGTAGGAATTTACCTTGAAGCAGATCAAGTCAGTGTGCAAATTGTAAGTAAGAGTGTGGGTTTGTGAAATCTCATGTCAGTCTTATCTGCCTGTTAAAAGATATTCAGCACAAACTAGCAGGCAGGAGAGATTTCCAAGTACTGCTTAGGATCTTGTAGTAAGTAGGATCTATGCCTTTCCTTTGGAATTGGATATTGTTTTCTTTATTCCCCAAGTTCTCGAGCATAAGTAGCAATTTCATCTATGAGCCATAATCAGAGAGTCAATAAAGACTTATAATAAATTTCTTTAGTGCATCATGTCTGAATATTCTCTGCTCATGTAATTCTCAGATAAAGTTCACCCTTAGGTGAAGATTGAGTACAGTTCTCTCCATATTGTAACTTGTGGGCTGTCAGTATTTCAACCAAATTATTCAAATTTGTATGAATAAGCAAATTTTAGT

Fln Alignment:

Contig12283___GRNFLSSLKNIEDQFIKACDSGKEVSKMLEANKVHYYPGFTEKKGKSWKCRFVVPCGLSCCMQPTVLESHEPPSKALTVTTWHQXXXXXXXXXXXXXXXXXXXXXXXXXXXFVEDTCMISGSHSSTLDRLYAWEIKLYEEVKAGDAIRRVYEKKCVQLRHQESKGASSEVIDKIRATIKDLYSRVRVAIEAVDSVSKRIQKLRDEELQPQLMELIQGLMKMWDKMGQCHEFQYHIIKDANISGRLADSVIFNDSYRQATIHLEKELQNWQSRFMDWMGAQKAYVLALHGWLLKCIKLPEPSARGRPTTFSPHRAGAPLVVIICNDWSRAFENLKQEVDVVEAIKTLVGNLQAISAHWDE----NQNGKDLDRKVSIRRVGSRMLDTQGPPLDNKKSNSSRAGNS----------IADDKNLSDSL--RKQAEAGYHKVMQQTHVDY-----------LKKLQKGLEKIFELLFDLACKSHEICKGLH
B8LQT1_______________GKHLLQVLQDIDDQFLVASESGLAVSKMLEANRLHYHSNFADNKG-------------------TINHSEQ----VMRVITWNRSFKGPHGLEDGNDDMQGKEKE----------------THASVLDKLLAWENKLYDEVKAGELMKIEYQKKIASLNKQKKRGRNSEALEKTKAAVKYLHTRYMVDFQAMDSTSSEIQRLRDEQLYPNLVELVEGMEKMWKSMYDCHRRQEEIVKDLRFDNSNAPDET-TKQHHDRTYQLYNVANEWHAQSEKLFIHQKQYIGALNNWLR--LNLIPIESNLKEKVSSPPKAFVPPIHELLQVWHSTLDQLPYAV-ALQGLKSFAAIINRIFTQQQEELKKKKNYEDAQAELERKRKAFNEWALRNPP-ENKGSEESAGGQTENRSSEENAGVQTEINNKDPSMERRHALILLEKRVHEEGVKHKNSCKLTRDLSLKSLETGLPALFQALVGLSRNCFETYKELH

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
959	33			66	0.997452
961	66		33		0.997452
1005	10			90	0.90298
1037	10		90		0.90298
1040	90			10	0.90298
1041		90		10	0.90298
1247	80		20		0.995493
2006	81		18		0.999994
2058		12	87		0.992554
2061			87	12	0.992554
2101		85		14	0.993533
2198		25		75	0.996473
2244	75			25	0.996473
2343	14			85	0.993533
2347	85			14	0.993533
2485		25	75		1.0
2814		10	90		0.999898
2815		10	90		0.999898
2817			89	10	0.999919
2818	89			10	0.999919
2819		10	89		0.999919
2822		21		78	1.0
2983	14			85	0.993533
2985		71		14	0.984337
2986	83		16		0.994512
2989	83		16		0.994512
3030	20			80	0.995493
3033		80		20	0.995493
3034		80		20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
271	282	CCT CCT CCT CCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain