SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12248

Length: 1563 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12248

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative transcriptional adaptor [Oryza sativa Japonica Group] gb\|ABF98901.1\| transcriptional adaptor, putative, expressed [Oryza sativa Japonica Group] gb\|EEC76186.1\| hypothetical protein OsI_13524 [Oryza sativa Indica Group] gb\|EEE59936.1\| hypothetical	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Histone acetyltransferase complex component	-	-	1.369e-19	-

Source	Gene names
Sma3	ADA2; ADA2A; ADA2B; At3g07740; At4g16420; F17A17.8; GSVIVT00004704001; GSVIVT00009957001; GSVIVT00029107001; HAC10; HXA02; HXA2; HXA901; HXA902; HXA903; LOC_Os03g53960; MICPUCDRAFT_63447; MICPUN_82818; MLP3.19; OSJNBa0047E24.21; Os03g0750800; OsI_13524; O

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transcription coactivator activity	GO:0003713	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	cold acclimation	GO:0009631	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	regulation of cell proliferation	GO:0042127	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, ZZ-type	IPR000433	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	SWIRM domain	IPR007526	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Transcriptional adaptor 2	IPR016827	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Arabidopsis thaliana	NP_566317.1	transcriptional adapter ADA2a [Arabidopsis thaliana]	0.0	45%
RefSeq	Populus trichocarpa	XP_002320515.1	histone acetyltransferase complex component [Populus trichocarpa]	0.0	54%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A897

Fln msg: Distance to subject end: 203 aas, your sequence is shorter than subject: 395 - 506

Fln protein: MGRSRGVLAPTEDDPTQRSKRRRVASGGDNLDGGTSGTNEGKRALYHCNYCNKDISGTIRIKCATCPDFDLCVECFSVGAEVTPHKSNHPYRVMDNLSFPLIHPDWNADEEILLLEGVEMYGLGNWAEVADHVGTKTQSQCYDHYMMAYMKSPCYPLPDMSHVIGKTKAELLNMAKVHAEGKKGFSAYGDPSLSKPPKEEPSVSPLRIKAEDVNKDSLAEGRSPSNSIAERENSEKKANNLRGNGTGKKASNAVQVKEGSNGLVAGSPALTEDPLTNRSIGGKKPKTSGEDGSPLLELSGYNPKRQEFDPEYDNDAELPLAEMEFKDNDSETDHELKLRMLRIYLSRLDERKRRKDFILERDLLHSRPLEKMLSKEEKELYQRCRVFMRFHSQEH

Protein Length: 396

Fln nts: ATGGGATCGCAGAGTTCGGTCGGTAGGGTTTCATTGTGGTCGAATTTAATCTCAGAAAGTGTGCCATTTATGTGAAATCTCTGTTGGGCGGACGGCCACCTCTGTAATTCACGCAATGCCTATGAATTTCGGGAAAAGTCTTACTGATTTCCTCCCATCGCGGTTTCGAAGGACTGTTTGAGGGTTTGACGGAAGGTCGAAGAACACTGATAATTTCTATTAAAGTTTAATGCTTTCCGTGTGCCGTTGCCATATATCATTAGATTTGCAGTTTGTGAAATTCTATCATGTCCGGTAATCGGGTTTCGGGAAGGGTTCACCTGTAACCCGGGATGATTTCCAATTGACGGTCTTTTCATTAGCAGAATTCTGTAGTC_-_ATGGGACGCTCAAGGGGTGTCCTGGCCCCTACGGAAGACGATCCCACTCAACGGTCGAAAAGGCGAAGAGTTGCATCAGGTGGCGATAATTTGGATGGTGGAACTTCAGGGACAAATGAAGGAAAAAGGGCACTATACCATTGCAACTACTGTAACAAGGATATTTCAGGGACAATCCGCATCAAATGTGCAACATGTCCGGATTTTGATTTGTGTGTAGAATGCTTTTCTGTAGGTGCTGAGGTTACTCCTCACAAGAGCAATCATCCTTACAGAGTAATGGACAATCTGTCTTTTCCCCTCATTCACCCAGATTGGAATGCAGATGAAGAGATATTGCTCTTAGAGGGAGTTGAAATGTATGGATTAGGAAATTGGGCAGAGGTTGCAGACCATGTTGGCACAAAGACACAATCCCAGTGCTATGATCATTATATGATGGCATACATGAAATCTCCATGCTACCCTTTACCTGATATGTCACATGTTATTGGAAAGACAAAGGCAGAACTTTTAAACATGGCCAAAGTACATGCAGAAGGCAAAAAAGGGTTTTCTGCCTATGGAGATCCGAGTTTATCTAAACCTCCCAAAGAAGAGCCTTCTGTATCTCCTTTAAGGATCAAGGCGGAAGATGTGAATAAAGACTCATTAGCAGAAGGCCGTTCCCCATCAAATTCAATAGCAGAACGAGAAAATTCAGAGAAGAAGGCAAATAACCTTCGTGGTAATGGCACAGGGAAAAAGGCTTCAAATGCAGTGCAAGTCAAGGAGGGGTCCAATGGGCTTGTTGCAGGAAGTCCAGCATTAACTGAAGATCCTTTGACAAATCGGAGTATTGGAGGGAAAAAACCGAAGACATCAGGGGAAGATGGTTCTCCTCTGTTGGAACTAAGTGGTTATAATCCTAAAAGACAAGAGTTTGATCCAGAGTATGACAATGATGCAGAATTGCCTTTGGCAGAGATGGAATTCAAGGATAATGATTCAGAAACAGACCATGAATTGAAGCTACGCATGTTGCGCATATATTTATCTAGGCTTGACGAACGAAAACGGCGAAAAGATTTTATATTGGAAAGAGACCTACTTCATTCTAGGCCCCTGGAGAAAATGCTTTCAAAGGAGGAAAAAGAACTTTACCAGCGTTGTAGGGTGTTCATGCGTTTCCATTCACAAGAACATT

Fln Alignment:

Contig12248___LEGVEMYGLGNWAEVADHVGTKTQSQCYDHYMMAYMKSPCYPLPDMSHVIGKTKAELLNMAKVHAEGKKGFSAYGDXXXXXXXXXXXXXXXXRIKAEDVNKDSLAEGRSPSNSIAERENSEKKANNLRGNGTGKKASNAVQVKEGSNGLVAGSPALTEDPLTNRSIGGKKPKTSGEDGSPLLELSGYNPKRQEFDPEYDNDAELPLAEMEFKDNDSETDHELKLRMLRIYLSRLDERKRRKDFILERDLLHSRPXXXXXXXXXXXXYQRCRVFMRFHSQE
D5A897_______________LQGVEMYGLGNWAEVADHVGTKTKSQCYDHYMMAYMNSPCYPLPDMSHVIGKTKAELLNMAKVHGEGKKGFSAYGDPILSKPPKEEPSISPLRIKVEDVNKDSSAEGRSPSTFIAEGENSENKANNLRGNGTGKKASNAVQVKEGSNGLVAGSPALAEDPLTNRSIGGKKPKASGEDGPPLLELSGYNPKRQEFDPEYDDDAEKPLAEMEFKENDSETDHELKLRMLRIYLSRLNERKRRKDFILERDLLHSRPLDKILSKEEKELYQRCRVFMRFHSQE

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
794	16	83			0.994512
797			83	16	0.994512
846		25		75	0.996473
1068	75		25		0.996473
1069	75		25		0.996473
1070	25	75			0.996473
1071	25		75		0.996473
1073	25		75		0.996473
1075	75		25		0.996473
1076	75		25		0.996473
1077	75	25			0.996473
1086	75			25	0.996473
1088	75	25			0.996473
1096	75		25		0.996473
1098	75	25			0.996473
1101	25	75			0.996473
1102			25	75	0.996473
1103			25	75	0.996473
1104	25	75			0.996473
1106			25	75	0.996473
1119	75			25	0.996473
1154			66	33	0.997452
1254			85	14	0.993533
1255	85		14		0.993533
1256			14	85	0.993533
1308		10	90		0.90298
1309	90	10			0.90298
1310	10			90	0.90298
1311	10	90			0.90298
1366	88		11		0.923564
1419		12		87	0.992554
1420	11	88			0.923564
1422	88			11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain