SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12071

Length: 1142 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12071

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent clp protease ATP-binding subunit clpx, putative n=1 Tax=Ricinus communis RepID=B9S1U1_RICCO	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Sma3	ATP-dependent clp protease ATP-binding subunit clpx, putative	-	-	5.606e-15	-

Source	Gene names
Sma3	At1g33360; At5g49840; At5g53350; CHLREDRAFT_196541; CLPX; ClpX; ClpX1; F10C21.5; GSVIVT00031954001; GSVIVT00035353001; GSVIVT00037259001; GSVIVT00037260001; GSVIVT00038492001; MICPUCDRAFT_29336; MICPUN_61722; OJ1057_D08.26; OSJNBa0053E05.18; OSTLU_23955;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Clp protease, ATP-binding subunit ClpX	IPR004487	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G53350.1	CLPX CLP protease regulatory subunit X chr5:21644060-21647503 FORWARD LENGTH=579	76%
RefSeq	Arabidopsis thaliana	NP_568792.1	CLP protease regulatory subunit X [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002321405.1	predicted protein, partial [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL95

Fln msg: Distance to subject end: 195 aas, your sequence is shorter than subject: 380 - 1036

Fln protein: NLGKDLPTPRKICKGLDKFVVGQERAKKVLAVAVYNHYKRIFHESLQKGGCKGFSSDGLGVSDASPPGEETEESDMVELEKSNVLLLGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADFNVKAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDHIQIDTKDILFICGGAFVDLEKTIAERRQDASIGFGAPVRTNMRSSGLTNATITSSLLELAESSDLVAYGLIPEFVGRFPVFVSISALSEDQLIKVLMEPRNALGRQYRKLFSMDNVKLHFTEGAMRQIAKKALAKNTGARGLRSILENLLTEAMFEIPEATTGQNRIDAVVVDEEV

Protein Length: 381

Fln nts: CAATTTGGGGAAGGATTTGCCGACTCCTCGGAAAATTTGCAAGGGGCTCGACAAGTTTGTTGTCGGACAGGAGCGAGCGAAAAAGGTGCTTGCAGTAGCTGTGTACAATCACTATAAGCGGATTTTCCATGAGTCTTTGCAGAAAGGCGGTTGCAAGGGATTTTCATCGGATGGGCTTGGTGTATCAGACGCGAGTCCTCCCGGAGAAGAAACTGAGGAGAGTGATATGGTGGAACTGGAGAAAAGCAATGTTCTACTCTTGGGTCCTACTGGCTCAGGGAAGACACTACTTGCAAAAACTCTGGCTAGGTTTGTGAATGTGCCCTTTGTTATCGCAGATGCAACAACTTTAACACAGGCAGGATATGTAGGGGAGGATGTGGAGTCTATTTTGTATAAACTACTCATGGTTGCCGATTTCAATGTTAAAGCAGCTCAGCAAGGCATTGTTTATATTGATGAAGTTGATAAAATCACTAAGAAGGCTGAAAGCCTCAATATTAGCAGGGATGTGTCAGGGGAGGGTGTTCAGCAGGCATTACTTAAAATGCTAGAAGGAACAGTTGTAAATGTTCCAGAAAAGGGAGCTCGCAAACATCCTCGTGGTGATCATATTCAGATCGATACAAAGGATATTCTCTTTATATGTGGTGGGGCATTTGTGGACCTGGAGAAAACAATTGCAGAAAGACGACAAGATGCTTCAATTGGCTTTGGAGCACCTGTACGTACAAATATGAGGTCGAGTGGCCTAACAAATGCAACAATTACATCATCATTACTGGAATTGGCTGAGAGTAGTGACTTGGTTGCTTATGGCTTGATACCAGAGTTTGTTGGTCGGTTTCCTGTTTTTGTGAGCATTTCAGCTTTAAGTGAAGACCAACTTATTAAGGTTCTCATGGAGCCTAGAAATGCACTTGGCAGGCAGTATAGAAAATTGTTTTCTATGGACAATGTTAAGTTGCACTTCACAGAAGGAGCAATGCGACAGATTGCAAAGAAAGCATTGGCTAAGAATACTGGAGCCCGTGGTTTACGTTCCATCCTTGAAAACCTTTTGACTGAAGCCATGTTTGAGATTCCAGAGGCAACAACAGGACAAAATAGAATTGATGCCGTTGTCGTTGATGAAGAGGTGC

Fln Alignment:

Contig12071___VLLLGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADFNVKAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV
B8LL95_______________ILLSGPPGTGKTLLARAIARECGLPFVFASGAEFSESG--PRSGSEKIFELF----FTARANAPSFVFIDEIDALAGK----NVNDDRERTSTFEQLLSQLDGDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain