SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12032

Length: 1710 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12032

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SufE/NifU family protein [Arabidopsis thaliana] gb\|AAK32747.1\|AF361579_1 AT4g22220/T10I14_50 [Arabidopsis thaliana] emb\|CAA16772.1\| nifU-like protein [Arabidopsis thaliana] emb\|CAB79177.1\| nifU-like protein [Arabidopsis thaliana] gb\|AAL87374.1\| AT4g22220/	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	iron-sulfur cluster assembly	GO:0016226	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ISC system FeS cluster assembly, IscU scaffold	IPR011339	-	0.0	-
Sma3	NIF system FeS cluster assembly, NifU, N-terminal	IPR002871	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G22220.1	ISU1, ATISU1 SufE/NifU family protein chr4:11759444-11760881 REVERSE LENGTH=167	83%
RefSeq	Arabidopsis thaliana	NP_193953.1	SufE/NifU family protein [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002322168.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKA0

Fln msg:

Fln protein: MLRKAGASVTSAARAAHASAMGGVRAYHERVVDHYNNPRNVGSFDKNDPDVGTGLVGAPACGDVMKLQIKVDSETGKIVDSCFKTFGCGSAIASSSVATEWIKGKPMEEVVSIKNSDIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKDTEVKQEEKVAEA*

Protein Length: 167

Fln nts: TTTTTTCATGCTCATCCAAATAAAAATCTAATCCACTTTATTCGTAATAAATTCTGAAATAGTTCATTGACATAATCAATCCTAATTAAAGTCCGTGAGAATCTTCACATGGCCTTATCATTGCCTTATCATTCACATGGCCTTATCATTGCCTTATCATCCCTAGCAAGTCCAATCCAGTCCCCATTACCCAGGCTAATTCACTCTAGAGTCTATGCTTCCTAATTAAGATCTAATTCACCCCACTTGACATTGATATTCTTGACATAATCCCTCCTAATAAAAAGCTAATCCAACCCACTGTATTACTAGAGTATATCAAGCTCTAATAACACCAATAATATCAGCTCTAATAACACCAATAATATCCTTATTGAGGCCATCCAATCCCACAGAGTATCCATAGCTATCTATAATCACCATTTCAGTTTGGAAGAGATGTAGTCACCATCTCAATTTGGAGGGGAAGTACTTGTCGATAAGTGATTGGTAATATGGCTTCACGGCCTCCACATCAATTCTGACCTTACTCTTACTGTACAAGTCATATTTATTGAATATTTTAACCCACTCGAGCATCTCCTTGTATGAAACATTAAGCAAGTCCATCCAAGCACGCAAGAAGATTCGGAGCCTCGCAATCAAGCTTTACGGCCAGGTTGCACTCTGTCCACAAACAAGAACTCGAAAACCCAACGTCTCGAGATCGAATCTTTAGAGCGTCACAGGCCATTAGTAGCAAGGAGTCCAAGTATTCTGAAGGATATTGAAGCTTTCGACCAGGAATTATCTTCCCGCTGATAATCGGCAAAT_-_ATGTTGAGGAAAGCCGGAGCTAGCGTAACCAGTGCTGCCCGCGCAGCTCATGCGTCGGCTATGGGCGGCGTGAGGGCTTATCACGAGAGAGTGGTCGACCATTACAATAACCCTCGGAATGTTGGATCCTTCGACAAGAACGATCCTGACGTCGGCACAGGTCTGGTTGGTGCTCCCGCCTGTGGCGATGTCATGAAATTGCAGATAAAGGTCGACTCGGAGACCGGAAAGATTGTGGATTCATGCTTTAAGACCTTCGGCTGTGGCTCTGCTATTGCTTCGTCTTCTGTCGCAACTGAATGGATTAAGGGGAAGCCAATGGAGGAAGTTGTGTCTATAAAAAATAGTGACATAGCAAAGCATCTTTCACTTCCACCAGTGAAGCTTCATTGCAGCATGCTTGCTGAGGATGCTATCAAGGCAGCTGTTAAAGACTACGAAGCAAAGAGAGCTAAGGACACCGAGGTTAAACAGGAGGAGAAAGTTGCTGAAGCCTAA___AACCAATCTGCTCAACAGAGTTTTTTGGTTGGTTGTAATAAGTGTTCAGTGGGATGTTTGTATTTTTCATAAATGTATACAAGTATGTCAAGATTGCTGAGTAGCTGCTATTGATGCCAACTTGTGAACATGTCTATTTAGTGTCTGTATATTTTTGTGCTTATTGTGCATCATGTTTTTAAATTTGAGAAAACACGATCTAGTAAGTTATGCTAGGTTTTGATCTTATGACTGTTGTTTTGTTACAATTTTGTGGTTTTTTTCACTTACTGCTCTAGTCTGCTTAATAGCAGGCCACATCTTCGATGGTTCGTTTCATTTTTTTATCTTCTGGACATGACAATGTTAAAACTTTGAGATTGCGAGGTCCCATACATCTCGTTTGTTATAGTAGTTTGA

Fln Alignment:

Contig12032___VRAYHERVVDHYNNPRNVGSFDKNDPDVGTGLVGAPACGDVMKLQIKVDSETGKIVDSCFKTFGCGSAIASSSVATEWIKGKPMEEVVSIKNSDIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKDT
B8LKA0_______________VRAYHERVVDHYNNPRNVGSFDKNDPDVGTGLVGAPACGDVMKLQIKVDSETGKIVDSCFKTFGCGSAIASSSVATEWIKGKPMEEVVSIKNSDIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKNT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1598	81	18			0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain