SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12007

Length: 1809 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12007

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine carboxypeptidase-like 26 [Arabidopsis thaliana] sp\|Q9ZQQ0.1\|SCP26_ARATH RecName: Full=Serine carboxypeptidase-like 26; Flags: Precursor gb\|AAD21479.1\| putative serine carboxypeptidase II [Arabidopsis thaliana] gb\|AAM15111.1\| putative serine carboxy	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G35780.1	scpl26 serine carboxypeptidase-like 26 chr2:15037733-15040104 REVERSE LENGTH=452	64%
RefSeq	Arabidopsis thaliana	NP_181121.1	serine carboxypeptidase-like 26 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002312024.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUH4

Fln msg: your sequence is longer than subject: 482 - 450

Fln protein: MSRGAMAEQFYMTFVLLLFLVSFQSTATSSWKDSNEGDWRNEQDRDRITQLPGQPSNVNFDQYSGYITVDSNAGRALFYWLVEATGNPSSKPLVLWLNGGPGCSSVAYGEAEELGPFHINADGKSLYLNPYSWNKLANILFLDSPAGVGFSYTNTSSDISLSGDKRTAEDSYSFLLNWLERFPQYKHREFYIAGESYGGHYVPQLAQVIYRHNKDLENPAINLKGYMVGNALTDDFHDLVGIFEFLWSHGLISDNTYRLLNILCDFSSLVHPSALCDMVLDRADVEMGKIDPYSIYTPPCLNSTGIYRKQQRKRYPWRHLFGEYDPCTEKHSEIYFNLPEVQKALHANVTGIPYSWTTCSDEVSEHWGDSPRSMLPIYQELINAGLRIWMFSGDTDSVIPVTSTRHTINALKLRTVTQWHPWYDNDQVGGWTQVYEGLTFVTVRGAGHEVPLHEPRKAFTVFKSFLEGKPMPVLPKLVDTL*

Protein Length: 483

Fln nts: ACGTCGTGACCTTGGCTGTCACTCAAATATCACAACTTTACTATTCCTGGAGGCCCGAGGGCATGTATGTCTTCTGCCCTCAAGGTCACAATTAATACTTTCCAAACGGCCTATTAATTGGCTGTAGGTGTATGAAAAACCGTTAGGTCGATTTGGATTGTTATCAGCGATAGCAGCAAAAGAACTTG_-_ATGAGCAGAGGCGCAATGGCAGAACAGTTTTATATGACGTTTGTTCTTCTTCTGTTTCTTGTTTCGTTTCAATCCACAGCCACATCCTCATGGAAAGACAGTAATGAGGGTGATTGGAGAAATGAGCAGGACAGGGACAGAATCACTCAACTTCCTGGTCAGCCCTCAAATGTGAACTTTGACCAATATTCTGGCTATATAACCGTAGACAGCAACGCCGGTAGAGCTCTCTTCTACTGGCTCGTTGAAGCCACAGGAAACCCATCTTCCAAGCCTCTGGTTCTATGGTTGAATGGAGGTCCTGGATGCTCCTCTGTGGCGTATGGGGAAGCAGAAGAGCTTGGGCCTTTTCACATTAATGCTGATGGGAAAAGTCTGTACCTTAATCCATATTCATGGAATAAATTGGCCAATATACTCTTTTTGGATTCTCCTGCTGGGGTTGGTTTTTCTTACACCAACACTTCTTCAGATATATCCCTGTCTGGAGATAAACGAACTGCGGAAGATTCATACAGTTTCCTGCTTAACTGGTTGGAAAGATTCCCCCAATATAAACATAGAGAGTTTTACATTGCAGGAGAGAGCTATGGAGGGCATTACGTTCCGCAGTTAGCTCAAGTCATCTACAGACACAACAAGGACCTTGAAAATCCAGCCATTAATCTGAAAGGATATATGGTGGGCAATGCACTTACAGATGATTTCCATGATCTTGTAGGGATTTTTGAATTTTTGTGGTCTCATGGTTTGATATCAGACAACACCTACCGGTTGCTCAATATTCTCTGTGACTTTTCATCTCTTGTGCATCCATCAGCTCTATGTGATATGGTATTAGATCGTGCCGATGTGGAAATGGGGAAAATTGATCCATACAGTATCTACACACCCCCTTGTTTGAACAGTACTGGAATATATAGAAAACAACAGAGAAAAAGATATCCATGGAGGCATCTGTTTGGGGAGTATGATCCTTGCACTGAAAAGCATTCCGAAATTTATTTCAATCTACCTGAAGTACAAAAGGCTCTTCATGCCAATGTTACAGGAATTCCTTATAGCTGGACTACTTGCAGTGATGAAGTTTCCGAGCACTGGGGAGACTCCCCTAGATCTATGTTGCCAATTTACCAAGAGCTCATAAACGCTGGACTACGCATTTGGATGTTCAGTGGAGATACAGATTCAGTGATTCCAGTAACATCGACCAGACATACTATAAATGCTCTCAAGCTTCGGACGGTTACTCAATGGCATCCTTGGTATGACAATGATCAGGTGGGAGGATGGACTCAAGTATACGAAGGGCTGACATTTGTAACAGTCAGAGGAGCAGGTCATGAAGTTCCACTCCATGAACCTAGAAAGGCCTTCACAGTCTTCAAGTCATTCCTAGAAGGAAAACCGATGCCGGTCCTTCCAAAGCTCGTAGATACTCTGTAG___TTAATGTTAAAGCCAGAGGAGATCCTAGCACTCGTTGAAATACTTGAAATCTAAATGACTAGGTACAGTTCATATATTGTAATTCACTAAATTTAGTGCGGTATAGTTATATATATTAATATTTAGTAAATTTTGTGAGAAATTGAAATTGAGGTATAAAAAAATTATAATTTCG

Fln Alignment:

Contig12007___MSRGAMAEQFYMTXXXXXXXXSFQSTATSSWKDSNEGDWRNEQDRDRITQLPGQPSNVNFDQYSGYITVDSNAGRALFYWLVEATGNPSSKPLVLWLNGGPGCSSVAYGEAEELGPFHINADGKSLYLNPYSWNKLANILFLDSPAGVGFSYTNTSSDISLSGDKRTAEDSYSFLLNWLERFPQYKHREFYIAGESYGGHYVPQLAQVIYRHNKDLENPAINLKGYMVGNALTDDFHDLVGIFEFLWSHGLISDNTYRLLNILCDFSSLVHPSALCDMVLDRADVEMGKIDPYSIYTPPCLNSTGIYRKQQRKRYPWRHLFGEYDPCTEKHSEIYFNLPEVQKALHANVTGIPYSWTTCSDEVSEHWGDSPRSMLPIYQELINAGLRIWMFSGDTDSVIPVTSTRHTINALKLRTVTQWHPWYDNDQVGGWTQVYEGLTFVTVRGAGHEVPLHEPRKAFTVFKSFLEGKPMPVLPKLVDTL
A9NUH4_______________MSRGAMAEEVYISFVILLLLVALQSTATSTWEESNERDWRNEQAKDRITQLPGQPSNVNFAQYSGYITVDNNAGRALFYWLIEATENPSSKPLVLWLNGGPGCSSVAYGEAEELGPFHINADGKSLYLNPYSWNKLANILFLDSPAGVGFSYTNTSSDISQSGDRRT-------------------------------GHYVPQLAQVIYKRSKGLANPVINLKGYMVGNGVTDDFHDIVGIFEYMWSHGLISDNTYRLLNVLCDFSSLLHPSALCNMALDKADVEMGEIDPYSIYTPPCLNSTGTYRKQHRKRYPWRHLFGEYDPCTEKHSEIYFNLPEVQKALHANVTGIPYRWTTCSDAVADHWGDSPRSMLPIYQELIKAGLRIWMFSGDTDAVIPVTSTRYSINALKLPTVTQWHPWYDNGQVGGWTQVYEGLTFVTVRGAGHEVPLHEPRKAFTVFESFLEGKPMPVSPKLVDTL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1019	25		75		1.0
1100	75		25		0.996473
1382	11		88		0.923564
1650		76		23	1.0
1666	90		10		0.999898

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain