SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11930

Length: 1993 nt

UniGene Fasta

>sp_v3.0_unigene11930
ATGGGGTCCGGCTTGGGTGCAGAAGACTCCACTGAAATTCACTTTGGTGGGAGGAAGAAAAACATTTGGCCATACCGTCAACGACTGCTGTCATTCGAACTTTGACGTGACAAATGCCTCTTTCGTGTTCTTCTGAACTTCCTTTTAAAGTTGGCTGAGGGCACCAACGGGAGCTCCCCTAGCCGCTCCTAAAGCGCCCTTTATGCTCCTAACGATTGTCGGCTACGCAAAGGCATAAAGGTGCTGAAAAATGCATAGCTGTGAGGAATTTGTCAGTCGTAGGTGTAAGGAATTGCGGCGTAGAGTGGTTCTCTGACAGTACTTGTGCTTTTCTTTAAAGGGAATTACTATTTTCTTTGAGATTTTGTTGTCCAGGGTCTGGTAAAATGTCCGCCCACGAACAATGTTGCGGCGTACAGTTCTGGATTTATATTGCTATAATTGTGGTGCTGGTTCTGATGGCGGGTGCAATGTCTGGCTTGACGCTTGGCCTCATGTCACTCAGCGTGATGGATTTGGAGGTACTCTCCGAGTCCGGAAGGCCGCAGGATCGCAAACACGCCGCTAAAATAATGCCTGTGGTGAAAAACCAACATTTGTTGTTGTGTACGCTTCTAATATGCAATGCTCTTGCCATGGAGGCACTTCCAATTTTCCTAGATTCATTGGCCCCAGCATGGGGTGCTGTATTAATATCCGTGACTCTGATACTCATGTTCGGAGAGATTATGCCCCAATCTGTCTGTTCTCGATATGGTTTAGCAGTTGGGGCTGCAATGGCACCAGTGGTTCGTGTACTTGTTTGGATCTGCTTTCCAGTTGCATGGCCAATAAGCAAGCTCTTGGATTTCTTGTTGGGCGAGGGACACGTTGCTCTTTTTCGCAGAGCTGAGCTGAAAACACTTGTGGATTTGCATGGAAATGAGGCAGGAAAAGGTGGAGAACTGACGCATGATGAAACAACAATCATTGCTGGGGCTTTGGGATTATCCGAGAAAACCGCAGAAGATGCAATGACCCCAATTTCAGAAACATTTGCTATTGATGTTAATGCAAAACTTGATAGGGACATGATGAACTTGATCTTAGAAAAGGGACATAGCAGAGTGCCTGTATATTATGAACAACCTACAAATATAATTGGACTAGTTTTGGTGAAGAATTTGTTGTCTATACATCCTACAGATGAAGTACCCGTAAAGAATGTGACCATCCGAAAGATTCCTCGCGTTCCAGCGAATCTGCCATTGTATGATATTTTGAATGAGTTTCAGAAAGGCCACAGCCATATGGCTGTGGTAGTGAGGTATGCTGAACAGAAGGAACAAGAAATTAAGAAAAGAAATGCAACCAACCAAAGCGTCATGCCAACAATCAGTGAACATGAATCAAATGGTGGGGGTGAGGATGTGAAAATAAATGTTGACCAAACTTCATCACAAGGTGCCCAGGAGAAAACCACTCCAAATAAAAGGCTATTTCAAAAGTGGAAAAGCTTTCCTGCTGCTCACACAAATGATGAAGACAAAGGATCGGGAAAATCAAGGCGGTGGTCTCGCACACCATCAGGAGATATTCTTCAAATTGCTGATAAACCACTTCCAAAACTCGCAGAGGATGAGGAGATCGTGGGTATAATAACGATGGAAGATGTTATTGAAGAGCTTTTGCAGGAGGAGATATTTGATGAGACAGATGCTCATGACGATACCAGTGCAAAGTAAACATTACAAGTGTGTCCTATTTCTGAAGTGATTTGTCCTGTTTTTCAACTAATGCTTTGTTGTTAGCTTCCGACCCTTTGAAAGAATTATAGCATAAAGCAATCATAATAGCTATTTCGATGGCACCACATTTTTGATAGAATTCAAAGCCTAGATGTGGAAATTTGTATTGTTATTCCACTATTGTGGCAAACCTTGTAAAATACAGTTTCACAGTTTATTTGTGACATACCTTTTATGCAAAAGAACAACTCTTGTTTTTGTATTAC

Ace file of the UniGene sp_v3.0_unigene11930

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CBS and transporter associated domain-containing protein [Arabidopsis thaliana] gb\|AEC06308.1\| CBS and transporter associated domain-containing protein [Arabidopsis thaliana]	-	-	0.0	64%
FL-Next	sp=DUF21 domain-containing protein At2g14520; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%

Source	Gene names
Sma3	AT4G33700; AT4g14230; AT4g14240; AT4g33700; At1g47330; At2g14520; At4g14230; At4g33700; CHLREDRAFT_108792; CHLREDRAFT_114099; CHLREDRAFT_143478; CHLREDRAFT_148687; F15K9.13; GSVIVT00012456001; GSVIVT00014615001; GSVIVT00019895001; GSVIVT00023690001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Flavodoxin	IPR001094	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Domain of unknown function DUF21	IPR002550	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Flavodoxin/nitric oxide synthase	IPR008254	-	-
Sma3	tRNA wybutosine-synthesis	IPR013917	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G14520.1	CBS domain-containing protein with a domain of unknown function (DUF21) chr2:6182362-6184648 REVERSE LENGTH=423	70%
RefSeq	Arabidopsis thaliana	NP_179058.3	CBS and transporter associated domain-containing protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002298798.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9ZQR4

Fln msg:

Fln protein: MSAHEQCCGVQFWIYIAIIVVLVLMAGAMSGLTLGLMSLSVMDLEVLSESGRPQDRKHAAKIMPVVKNQHLLLCTLLICNALAMEALPIFLDSLAPAWGAVLISVTLILMFGEIMPQSVCSRYGLAVGAAMAPVVRVLVWICFPVAWPISKLLDFLLGEGHVALFRRAELKTLVDLHGNEAGKGGELTHDETTIIAGALGLSEKTAEDAMTPISETFAIDVNAKLDRDMMNLILEKGHSRVPVYYEQPTNIIGLVLVKNLLSIHPTDEVPVKNVTIRKIPRVPANLPLYDILNEFQKGHSHMAVVVRYAEQKEQEIKKRNATNQSVMPTISEHESNGGGEDVKINVDQTSSQGAQEKTTPNKRLFQKWKSFPAAHTNDEDKGSGKSRRWSRTPSGDILQIADKPLPKLAEDEEIVGIITMEDVIEELLQEEIFDETDAHDDTSAK*

Protein Length: 447

Fln nts: ATGGGGTCCGGCTTGGGTGCAGAAGACTCCACTGAAATTCACTTTGGTGGGAGGAAGAAAAACATTTGGCCATACCGTCAACGACTGCTGTCATTCGAACTTTGACGTGACAAATGCCTCTTTCGTGTTCTTCTGAACTTCCTTTTAAAGTTGGCTGAGGGCACCAACGGGAGCTCCCCTAGCCGCTCCTAAAGCGCCCTTTATGCTCCTAACGATTGTCGGCTACGCAAAGGCATAAAGGTGCTGAAAAATGCATAGCTGTGAGGAATTTGTCAGTCGTAGGTGTAAGGAATTGCGGCGTAGAGTGGTTCTCTGACAGTACTTGTGCTTTTCTTTAAAGGGAATTACTATTTTCTTTGAGATTTTGTTGTCCAGGGTCTGGTAAA_-_ATGTCCGCCCACGAACAATGTTGCGGCGTACAGTTCTGGATTTATATTGCTATAATTGTGGTGCTGGTTCTGATGGCGGGTGCAATGTCTGGCTTGACGCTTGGCCTCATGTCACTCAGCGTGATGGATTTGGAGGTACTCTCCGAGTCCGGAAGGCCGCAGGATCGCAAACACGCCGCTAAAATAATGCCTGTGGTGAAAAACCAACATTTGTTGTTGTGTACGCTTCTAATATGCAATGCTCTTGCCATGGAGGCACTTCCAATTTTCCTAGATTCATTGGCCCCAGCATGGGGTGCTGTATTAATATCCGTGACTCTGATACTCATGTTCGGAGAGATTATGCCCCAATCTGTCTGTTCTCGATATGGTTTAGCAGTTGGGGCTGCAATGGCACCAGTGGTTCGTGTACTTGTTTGGATCTGCTTTCCAGTTGCATGGCCAATAAGCAAGCTCTTGGATTTCTTGTTGGGCGAGGGACACGTTGCTCTTTTTCGCAGAGCTGAGCTGAAAACACTTGTGGATTTGCATGGAAATGAGGCAGGAAAAGGTGGAGAACTGACGCATGATGAAACAACAATCATTGCTGGGGCTTTGGGATTATCCGAGAAAACCGCAGAAGATGCAATGACCCCAATTTCAGAAACATTTGCTATTGATGTTAATGCAAAACTTGATAGGGACATGATGAACTTGATCTTAGAAAAGGGACATAGCAGAGTGCCTGTATATTATGAACAACCTACAAATATAATTGGACTAGTTTTGGTGAAGAATTTGTTGTCTATACATCCTACAGATGAAGTACCCGTAAAGAATGTGACCATCCGAAAGATTCCTCGCGTTCCAGCGAATCTGCCATTGTATGATATTTTGAATGAGTTTCAGAAAGGCCACAGCCATATGGCTGTGGTAGTGAGGTATGCTGAACAGAAGGAACAAGAAATTAAGAAAAGAAATGCAACCAACCAAAGCGTCATGCCAACAATCAGTGAACATGAATCAAATGGTGGGGGTGAGGATGTGAAAATAAATGTTGACCAAACTTCATCACAAGGTGCCCAGGAGAAAACCACTCCAAATAAAAGGCTATTTCAAAAGTGGAAAAGCTTTCCTGCTGCTCACACAAATGATGAAGACAAAGGATCGGGAAAATCAAGGCGGTGGTCTCGCACACCATCAGGAGATATTCTTCAAATTGCTGATAAACCACTTCCAAAACTCGCAGAGGATGAGGAGATCGTGGGTATAATAACGATGGAAGATGTTATTGAAGAGCTTTTGCAGGAGGAGATATTTGATGAGACAGATGCTCATGACGATACCAGTGCAAAGTAA___ACATTACAAGTGTGTCCTATTTCTGAAGTGATTTGTCCTGTTTTTCAACTAATGCTTTGTTGTTAGCTTCCGACCCTTTGAAAGAATTATAGCATAAAGCAATCATAATAGCTATTTCGATGGCACCACATTTTTGATAGAATTCAAAGCCTAGATGTGGAAATTTGTATTGTTATTCCACTATTGTGGCAAACCTTGTAAAATACAGTTTCACAGTTTATTTGTGACATACCTTTTATGCAAAAGAACAACTCTTGTTTTTGTATTAC

Fln Alignment:

Contig11930___MSAHEQCCGVQFWIYIAIIVVLVXXXXXXXXXXXXXXXXXVMDLEVLSESGRPQDRKHAAKIMPVVKNQHXXXXXXXXXXXXXMEALPIFLDSLAPAWGAVLISVTLILMFGEIMPQSVCSRYGLAVGAAMAPVVRVLVWICFPVAWPISKLLDFLLGEGHVALFRRAELKTLVDLHGNEAGKGGELTHDETTIIAGALGLSEKTAEDAMTPISETFAIDVNAKLDRDMMNLILEKGHSRVPVYYEQPTNIIGLVLVKNLLSIHPTDEVPVKNVTIRKIPRVPANLPLYDILNEFQKGHSHMAVVVRYAEQKEQEIKKRNATNQSVMPTISEHESNGGGEDVKINVDQTSSQGAQEKTTPNKRLFQKWKSFPAAHTNDEDKGSGKSRRWSRTPSGDILQIADKPLPKLAEDEEIVGIITMEDVIEELLQEEIFDETDAH
Q9ZQR4_______________MAVEYECCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAKILPVVKNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCSRHGLAIGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGKGGELTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPVYYEQRTNIIGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMAVVVRQCD-KIHPLQSNDAANETV-------------NEVRVDVDYERS--PQETKLKRRRSLQKWKSFP----NRANSLGSRSKRWSKDNDADILQLNEHPLPKLDEEEDAVGIITMEDVIEELLQEEIFDETDHH

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
174		75	25		0.996473
175			25	75	0.996473
176		75	25		0.996473
273			20	80	0.995493
288	85	14			0.993533
364			12	87	0.992554
365			12	87	0.992554
366			12	87	0.992554
380		12		87	0.992554
479		88		11	0.923564
565		62	37		1.0
568	37		37		1.0
569	62			37	1.0
570	62		37		1.0
571	25			75	1.0
573	50			50	1.0
577		75	25		0.996473
579			75	25	0.996473
628		66		33	0.997452
1986	11			88	0.991528

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain