SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11896

Length: 2016 nt

UniGene Fasta

>sp_v3.0_unigene11896
CGTCGTGACCTTGGCTGTCATGGGGATCGTGGTTGCCTAACTACACTGACTCTCTCAATACCCTCTCCTCCAATTCTTTCTTCTGGTGTGGGAACGCCCACAGCTCCTCCATTTGCCCATCAAACAAATAGATTCATCACACACAACCCCCTCTCCTCCTATTCTTTCTTCTGGTGTGGGAACGCCCACAGCTCCTCCATTTGCCCATCAAACAAATAGATTCATCACACACAACCCAAATTCTATATATTTATTTTTTCACTATTCCACCTCACTCCGCGGAGACACTAAAACAACAGACACAGACAGGCATAAGCCAGTTATTTCTCCAAAATCTATGAATGGAAGGCAGGGAATCCAATGGACCTTCCCCATTCAATTCCTACTATCACAGACCTTACACTCCCAATCCCAATCCCAATCTCAATACACCCAATTCAAATCCTGCCACCAATGCTGTCTTTGCAGCCCCCCAGAGACCCATGGTGAGCCCTGAACAGTCCCTCCCTATGGTTAATAACAATAATACATCCAATGCCTCCGCTTCCTCCCCTCTGTATTCCGAGGGCCCAACTGCAATTTTTAATCATCCAGGGAGTGGAAGAGCGAGTCTGGCGGGTTCAGAGACCTTAAAGAGGAAGAGGGGAAGGCCTAGAAAGTATGGCACAGATGTTGATGGATTTGGTAATGTGGGTTTGGGCTTATCATCCCCATCATCACCATTTTCAGATAAAAAAGCGCGTGGGTCTGGCAAAAAAGCTCAGATGGTTGCACTTGGGTGTGCAGGGCATGGATTCATTCCACATGTCATCACAATTGCAGCAGGGGAAGATGTCTGTAAGAAAATAATGGCTTTTATGCAACATGGGCCATGGGCAGTTTGTGTACTTTCTGCTAATGGAGCTATTTCAAATGTGACTCTTCGCCAACCAGCCATGTCGGGTGGCACTGTAACATATGAGGGGCGGTTTGAGATTTTGTCATTGTCAGGTTCCTTTCTACTCAATGATGCTGGAGGAACTCCAACAAGAACTGGTGGCCTTAGTGTTTCACTAGCTGGGTCTGATGGTCGTGTTATTGGGGGCGGTGTGGGAGGTCTTCTCATGGCAGCAAGCCCTGTACAGGTAGTAGTTGGTACCTTCCTAGTTGATAACAAGAAGGATCTTGGGCGGGTTGGAAATGGTGAACCTTCCATCGGCACGTTATCAGGATCTGTTTCAGGGGGGTCTCCTTCACCTTCCGTTGCTGCACAATCTCGGGCAGAAGCTTCTGCTGCTACTAATCTGAGAAAAGGAGCTGAAGGTGAGCAAAATACTGGAGGTAGTAGTTATAATATGCAACCTCAAGGGTTAAGAATGATGTCCCTACAGGACTGGGCAGGTACTCATTTTGGGACCGAAACAAAGAGTGACACAGAGACAGCCTTGACAGGCAGAGCAAAACCAAGGGACCGAGATGATGGATCTCGATTTAACAAAGTGGACCAGGAAGGAGAGCGTAGAGGCCAACATATTACATTTGAGAACTAATGTTCTTGAGAAAATGTTTCCTAGAAAGAGGCATTCTGGCATGGTTAGAGGTTGATATAAAAGAGCTGGAGTGTCTTCATAAAGAGAGATTTTTGTATTTTTATTTTTGTCAGCTATTTCCATGTGTTGTAGACTAGATCTCTTTCTTCTGTAAACATAGTGTTTTAATTTTAAAATCTTTCATTGAGAGTCATCTTACCAAAAGTATATTGATGATGCTACATCATAACATGTTGTTCATATTAGATTGTAGCTGTTGGTTATATATCCAAGATTTTAAATTGTAACTACGCATCATTGAATGCCTTTTACCACCAGTGCATGGTAGAATTCCACTTTTCTTCCTATATAGACAATTGTTTTTGATACTTACCTCTGAGAGTCTAAACTCCAAAACTGGGAAACACCCAAATAGATGTAGCTGATTATCTCATAATTTGCGTTAAATGCAGATAGGTAAGCACTGAATAATTTGTTATGTTCAAAA

Ace file of the UniGene sp_v3.0_unigene11896

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AT hook motif DNA-binding family protein [Arabidopsis thaliana] ref\|NP_850215.1\| AT hook motif DNA-binding family protein [Arabidopsis thaliana] ref\|NP_973590.1\| AT hook motif DNA-binding family protein [Arabidopsis thaliana] ref\|NP_001118437.1\| AT hook m	-	-	8.40779e-45	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	AT-hook protein 1	-	-	4.517e-18	-

Source	Gene names
Sma3	46C02.5; AHL1; AHL10; AHL13; AHL2; AHL3; AHL7; AHL9; AHP1; AHP2; AT1; AT4g00200; AT4g12080; AT4g17950; AT4g22770; AT4g25320; At2g33620; At2g45850; At2g45850/F4I18.17; At3g04590; At4g00200; At4g12080; At4g17950; At4g17950/T6K21.130; At4g22770; At4g25320; F

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor TFIIB	IPR000812	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	Predicted AT-hook DNA-binding	IPR014476	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G33620.1	AT hook motif DNA-binding family protein chr2:14234749-14236563 FORWARD LENGTH=351	49%
RefSeq	Arabidopsis thaliana	NP_973590.1	AT hook motif DNA-binding family protein [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002307818.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9Z4

Fln msg:

Fln protein: MEGRESNGPSPFNSYYHRPYTPNPNPNLNTPNSNPATNAVFAAPQRPMVSPEQSLPMVNNNNTSNASASSPLYSEGPTAIFNHPGSGRASLAGSETLKRKRGRPRKYGTDVDGFGNVGLGLSSPSSPFSDKKARGSGKKAQMVALGCAGHGFIPHVITIAAGEDVCKKIMAFMQHGPWAVCVLSANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSFLLNDAGGTPTRTGGLSVSLAGSDGRVIGGGVGGLLMAASPVQVVVGTFLVDNKKDLGRVGNGEPSIGTLSGSVSGGSPSPSVAAQSRAEASAATNLRKGAEGEQNTGGSSYNMQPQGLRMMSLQDWAGTHFGTETKSDTETALTGRAKPRDRDDGSRFNKVDQEGERRGQHITFEN*

Protein Length: 397

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGATCGTGGTTGCCTAACTACACTGACTCTCTCAATACCCTCTCCTCCAATTCTTTCTTCTGGTGTGGGAACGCCCACAGCTCCTCCATTTGCCCATCAAACAAATAGATTCATCACACACAACCCCCTCTCCTCCTATTCTTTCTTCTGGTGTGGGAACGCCCACAGCTCCTCCATTTGCCCATCAAACAAATAGATTCATCACACACAACCCAAATTCTATATATTTATTTTTTCACTATTCCACCTCACTCCGCGGAGACACTAAAACAACAGACACAGACAGGCATAAGCCAGTTATTTCTCCAAAATCTATGA_-_ATGGAAGGCAGGGAATCCAATGGACCTTCCCCATTCAATTCCTACTATCACAGACCTTACACTCCCAATCCCAATCCCAATCTCAATACACCCAATTCAAATCCTGCCACCAATGCTGTCTTTGCAGCCCCCCAGAGACCCATGGTGAGCCCTGAACAGTCCCTCCCTATGGTTAATAACAATAATACATCCAATGCCTCCGCTTCCTCCCCTCTGTATTCCGAGGGCCCAACTGCAATTTTTAATCATCCAGGGAGTGGAAGAGCGAGTCTGGCGGGTTCAGAGACCTTAAAGAGGAAGAGGGGAAGGCCTAGAAAGTATGGCACAGATGTTGATGGATTTGGTAATGTGGGTTTGGGCTTATCATCCCCATCATCACCATTTTCAGATAAAAAAGCGCGTGGGTCTGGCAAAAAAGCTCAGATGGTTGCACTTGGGTGTGCAGGGCATGGATTCATTCCACATGTCATCACAATTGCAGCAGGGGAAGATGTCTGTAAGAAAATAATGGCTTTTATGCAACATGGGCCATGGGCAGTTTGTGTACTTTCTGCTAATGGAGCTATTTCAAATGTGACTCTTCGCCAACCAGCCATGTCGGGTGGCACTGTAACATATGAGGGGCGGTTTGAGATTTTGTCATTGTCAGGTTCCTTTCTACTCAATGATGCTGGAGGAACTCCAACAAGAACTGGTGGCCTTAGTGTTTCACTAGCTGGGTCTGATGGTCGTGTTATTGGGGGCGGTGTGGGAGGTCTTCTCATGGCAGCAAGCCCTGTACAGGTAGTAGTTGGTACCTTCCTAGTTGATAACAAGAAGGATCTTGGGCGGGTTGGAAATGGTGAACCTTCCATCGGCACGTTATCAGGATCTGTTTCAGGGGGGTCTCCTTCACCTTCCGTTGCTGCACAATCTCGGGCAGAAGCTTCTGCTGCTACTAATCTGAGAAAAGGAGCTGAAGGTGAGCAAAATACTGGAGGTAGTAGTTATAATATGCAACCTCAAGGGTTAAGAATGATGTCCCTACAGGACTGGGCAGGTACTCATTTTGGGACCGAAACAAAGAGTGACACAGAGACAGCCTTGACAGGCAGAGCAAAACCAAGGGACCGAGATGATGGATCTCGATTTAACAAAGTGGACCAGGAAGGAGAGCGTAGAGGCCAACATATTACATTTGAGAACTAA___TGTTCTTGAGAAAATGTTTCCTAGAAAGAGGCATTCTGGCATGGTTAGAGGTTGATATAAAAGAGCTGGAGTGTCTTCATAAAGAGAGATTTTTGTATTTTTATTTTTGTCAGCTATTTCCATGTGTTGTAGACTAGATCTCTTTCTTCTGTAAACATAGTGTTTTAATTTTAAAATCTTTCATTGAGAGTCATCTTACCAAAAGTATATTGATGATGCTACATCATAACATGTTGTTCATATTAGATTGTAGCTGTTGGTTATATATCCAAGATTTTAAATTGTAACTACGCATCATTGAATGCCTTTTACCACCAGTGCATGGTAGAATTCCACTTTTCTTCCTATATAGACAATTGTTTTTGATACTTACCTCTGAGAGTCTAAACTCCAAAACTGGGAAACACCCAAATAGATGTAGCTGATTATCTCATAATTTGCGTTAAATGCAGATAGGTAAGCACTGAATAATTTGTTATGTTCAAAA

Fln Alignment:

Contig11896___MEGRESNGPSPFNSYYHRXXXXXXXXXXXXXXXXXXXXAVFAAPQRPMVSPEQSLPMVXXXXXXXXXXXXPLYSEGPTAIFNHPGSGRASLAGSETLKRKRGRPRKYGTDVDGFGNVXXXXXXXXXXFSDKKARGSGKKAQMVALGCAGHGFIPHVITIAAGEDVCKKIMAFMQHGPWAVCVLSANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSFLLNDAGGTPTRTGGLSVSLAXXXXXXXXXXXXXLLMAASPVQVVVGTFLVDNKKDLGRVGNGEPSIGTLXXXXXXXXXXXXXXXXXXXXXXXXTNLRKGAEGEQNTGGSSYNMQPQGLRMMSLQ--DWAGTHFGTETKSDTETALTGRAKPRDRDDGSRFNKVDQEGERRGQHITFEN
D5A9Z4_______________MEGRESNGPSPFNSFYHRTYTPNPNLNTPNSNPTTN--AVFTAPQRAMLSPEQSLNIVNNNNTANASASSPLYSEGPTAIFSHPGSGRASLAGSETLKRKRGRPRKYGTDVDGFGNVGLGLSSPSSPFSDKKGRGSGKKAQMVALGCAGHGFIPHVITIAAGEDVCKKIMAFMQHGPWAVCVLSANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSFLLTDTGGTHTRTGGLSVSLAGSDGRVIGGGVGGLLMAASPVQVVVGTFLVDNKKDLGRVGNGEPSMGTLSGSMSGGSPSPSIAVQSRAETSAGTNLRKGGEGEQNTGGGTYNMQPQVLTMMSLQSMDWGGAHFEAETKSDTETALTGRTKPRDRDDGSRFKQVDQEEECRGQNITFEN

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
273		20		80	0.995493
274		44	55		1.0
275			44	55	1.0
276		44	55		1.0
277	88			11	0.923564
1015	11	88			0.999937
1019	88		11		0.999952
1163	10		90		0.90298
1636		12		50	1.0
1676	11			88	0.923564
1677	11			88	0.923564
1867	96			3	0.991164
1889		7		92	0.999999
1900	85		3		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
404	423	TCCCAA TCCCAA TCCCAA TC	20

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain