SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11747

Length: 2294 nt

UniGene Fasta

>sp_v3.0_unigene11747
GCAGAATCAGATGTGGAATCCAGCAATGCCACTGTCGGGAGTGAAAGATTCTTCGGCCTTATTCCTTTGGAAGTTCGTTGCAGAACAAAATGGACTTCCAGTACTGAAATAGGGATAATAGTGCTGCAGGATAGGGTATTGGAGTCGAAGAGGTCGAAACCACGAACGATGGATTCTTCCCTCTTCGTATTGTTGTCCGTCTTAATTGTTATTGCTGCGAATTTGCCGAGTTTCGCGGCCGTGCAGGACGATCCCACGTCCAGGATTACGCAAGAGTTCTCTGGTTATCCCGAAGAACACTTTCATGGTCTGCTGGATTCAGAGACATTCTTCGTCGACAAAGAAAGTCTAAAGCACCAGATTGATGAACTGTCAAGTTTCTCTGATAGTCCTCCTCCATCCGTGACCCGCATTCTGTACAGTATGAATGATGTTTTAGCTCGCAGGTATGTTAAAAGCCTTATGGAGGGAGCTGGTCTTCGTGTCCGTGAGGATGCTGTAGGAAATATATTTGGTCGTTGGGAGGGAAGCAATCCAGAGTTATCTGCTGTAGCAACTGGATCTCATATTGATGCTATTCCATACTCAGGCAAATTTGATGGAGTTGTTGGGGTTCTGGGTGCCATTGAAGCTATAAATGTGCTGAGAAGGTTGGCATTCAAACCAAAGAGATCACTGGAGGTGATTATGTTCACCTCTGAGGAGCCTACACGCTTTGGAATTGGCTGCCTTGGAAGCCGTTTATTGGCAGGGAGTGTAACTCTTGCAGAGACACTTAAAGAGTTAGTTGACAATCAGAATATATCATTTGAAGAAGCTGCAAAAACTGCAGGATACACTGGATCTCTACAGCACTTGGATAGTGTTTCATTACCAAAAGGTGCATACTTTGGATTTGTGGAGCTGCATATTGAGCAAGGTCCTCTTCTGGAGGAAGAAGGCATTCCTATAGGAATTGTGACAGCAATTGCTGCACCTGCAAGCATTAAGGTTGATTTTAAAGGAAATGGAGGGCATGCCGGAGCTGTATTGATGCCTAACAGGAATGATGCAGGACTGGCGGCTGCAGAGTTGGCATTGGCAGTTGAAAGACATGTTCTGGAGTCAGGCTCTGTCGACAGTGTGGGAACTACAGGTATTATGGAGATACATCCAGGAGCAATTAATAGCATTCCAAGTAAAGCACATGTTGAAATTGACACTCGAGACATTGATGAAGAACGCAGAAATGTTATTGTTCACAAAATTTATCAGTCTGCTTTAGAAATAGCTGAAAGACGTAAAGTTATATTGTCAGAGTTCGATATTGTGAATCAGGATCCTCCTGCTCGCTCTTATGAATCTATAATTAAAGAAATGGAGCTCGCAGCACACCAGCTAGATTTAAAGTACAAGCTTATGATCAGCCGGGCATACCATGACTCGCTATTCATGGCCAGGATAGCACCCATGGGAATGATCTTTATTCCTTGTTATAAAGGTTACAGCCATAGGCCAGATGAATATGCATCCATTGATGATATTTCCAATGGAGTTAAGGTATTAGCGGTAACATTAGCTAAACTGTCTTCAAACTAATTTCCAATGTAGTCAAGGTATTTCCGGTAACATCAGCTAAACTACCTTCAAACGAATCAAATGCGTGTAACAAATTTCATTATGACGTCTTTATCTAACATCCATGACAATTCCATTTTTATGGGGTTTCTATGATACACCAATTACAGTTTATTGAATACTTATTTTGGGGCTTCTTATATCGAAAGATTACATTAGCTGACAAAAGAGCTGGAGACTTCCATTACCACTTCAAGAGAATATTTAGAAAACGAGGGCAACCATGCTATATAGTCAACATGAAAAAGCAAGTCAGCAAGTCTTTTAAGAACAGATTCAAATCTCGAATGGACTGATTGCAACTTTCTAAGTAATAACAATAATAATTAATGTTAGATCTAAGACTTTTGTGATCCATAATGTAGAAATAAGTCTTTCGGATTAATCACATCAGCACGATTAAGAATTAACTTACATGATACAAACCAACTAATCTCAGTTCGAATCCTTAGGACAAGGTGAGAAATCAATCGATTTGAGAGAAAAAATAGCATGGATGTATCATTGTTCAGGGTTAGCCATGTCAAATTAGATACGGGCAAACACTAGAATCAATGATGCATCCCTACATCTTTTAAGAAACGTCAAATCGGATTTCTTCTTAGCAACTTGCAGTCGTGCCCGTTCAAGAAGAGTTAAAGAAGAAGAGTTCTTCACGACACTCACTAGGCTACAAC

Ace file of the UniGene sp_v3.0_unigene11747

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ureidoglycolate amidohydrolase [Arabidopsis thaliana] gb\|AAL67039.1\| putative N-carbamyl-L-amino acid amidohydrolase [Arabidopsis thaliana] gb\|AAM14326.1\| putative N-carbamyl-L-amino acid amidohydrolase [Arabidopsis thaliana] dbj\|BAF02137.1\| N-carbamyl-L-	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	72%

Source	Gene names
Sma3	At5g43600; CHLREDRAFT_205550; GSVIVT00020145001; LOC_Os12g40550; MICPUN_93279; Os12g0597500; OsI_38984; OsJ_36749; PHYPADRAFT_161063; POPTRDRAFT_769208; RCOM_0908830; RCOM_2074590;

Source	GOs	Term	Type	Identity
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	GO:0016813	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M20	IPR002933	-	-
Sma3	Amidase, hydantoinase/carbamoylase	IPR010158	-	-
Sma3	Peptidase M20, dimerisation	IPR011650	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G43600.1	ATAAH-2, UAH ureidoglycolate amidohydrolase chr5:17512651-17515280 FORWARD LENGTH=476	70%
RefSeq	Arabidopsis thaliana	NP_199173.2	ureidoglycolate amidohydrolase [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002314646.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7T7A4

Fln msg:

Fln protein: MDSSLFVLLSVLIVIAANLPSFAAVQDDPTSRITQEFSGYPEEHFHGLLDSETFFVDKESLKHQIDELSSFSDSPPPSVTRILYSMNDVLARRYVKSLMEGAGLRVREDAVGNIFGRWEGSNPELSAVATGSHIDAIPYSGKFDGVVGVLGAIEAINVLRRLAFKPKRSLEVIMFTSEEPTRFGIGCLGSRLLAGSVTLAETLKELVDNQNISFEEAAKTAGYTGSLQHLDSVSLPKGAYFGFVELHIEQGPLLEEEGIPIGIVTAIAAPASIKVDFKGNGGHAGAVLMPNRNDAGLAAAELALAVERHVLESGSVDSVGTTGIMEIHPGAINSIPSKAHVEIDTRDIDEERRNVIVHKIYQSALEIAERRKVILSEFDIVNQDPPARSYESIIKEMELAAHQLDLKYKLMISRAYHDSLFMARIAPMGMIFIPCYKGYSHRPDEYASIDDISNGVKVLAVTLAKLSSN*

Protein Length: 471

Fln nts: GCAGAATCAGATGTGGAATCCAGCAATGCCACTGTCGGGAGTGAAAGATTCTTCGGCCTTATTCCTTTGGAAGTTCGTTGCAGAACAAAATGGACTTCCAGTACTGAAATAGGGATAATAGTGCTGCAGGATAGGGTATTGGAGTCGAAGAGGTCGAAACCACGAACG_-_ATGGATTCTTCCCTCTTCGTATTGTTGTCCGTCTTAATTGTTATTGCTGCGAATTTGCCGAGTTTCGCGGCCGTGCAGGACGATCCCACGTCCAGGATTACGCAAGAGTTCTCTGGTTATCCCGAAGAACACTTTCATGGTCTGCTGGATTCAGAGACATTCTTCGTCGACAAAGAAAGTCTAAAGCACCAGATTGATGAACTGTCAAGTTTCTCTGATAGTCCTCCTCCATCCGTGACCCGCATTCTGTACAGTATGAATGATGTTTTAGCTCGCAGGTATGTTAAAAGCCTTATGGAGGGAGCTGGTCTTCGTGTCCGTGAGGATGCTGTAGGAAATATATTTGGTCGTTGGGAGGGAAGCAATCCAGAGTTATCTGCTGTAGCAACTGGATCTCATATTGATGCTATTCCATACTCAGGCAAATTTGATGGAGTTGTTGGGGTTCTGGGTGCCATTGAAGCTATAAATGTGCTGAGAAGGTTGGCATTCAAACCAAAGAGATCACTGGAGGTGATTATGTTCACCTCTGAGGAGCCTACACGCTTTGGAATTGGCTGCCTTGGAAGCCGTTTATTGGCAGGGAGTGTAACTCTTGCAGAGACACTTAAAGAGTTAGTTGACAATCAGAATATATCATTTGAAGAAGCTGCAAAAACTGCAGGATACACTGGATCTCTACAGCACTTGGATAGTGTTTCATTACCAAAAGGTGCATACTTTGGATTTGTGGAGCTGCATATTGAGCAAGGTCCTCTTCTGGAGGAAGAAGGCATTCCTATAGGAATTGTGACAGCAATTGCTGCACCTGCAAGCATTAAGGTTGATTTTAAAGGAAATGGAGGGCATGCCGGAGCTGTATTGATGCCTAACAGGAATGATGCAGGACTGGCGGCTGCAGAGTTGGCATTGGCAGTTGAAAGACATGTTCTGGAGTCAGGCTCTGTCGACAGTGTGGGAACTACAGGTATTATGGAGATACATCCAGGAGCAATTAATAGCATTCCAAGTAAAGCACATGTTGAAATTGACACTCGAGACATTGATGAAGAACGCAGAAATGTTATTGTTCACAAAATTTATCAGTCTGCTTTAGAAATAGCTGAAAGACGTAAAGTTATATTGTCAGAGTTCGATATTGTGAATCAGGATCCTCCTGCTCGCTCTTATGAATCTATAATTAAAGAAATGGAGCTCGCAGCACACCAGCTAGATTTAAAGTACAAGCTTATGATCAGCCGGGCATACCATGACTCGCTATTCATGGCCAGGATAGCACCCATGGGAATGATCTTTATTCCTTGTTATAAAGGTTACAGCCATAGGCCAGATGAATATGCATCCATTGATGATATTTCCAATGGAGTTAAGGTATTAGCGGTAACATTAGCTAAACTGTCTTCAAACTAA___TTTCCAATGTAGTCAAGGTATTTCCGGTAACATCAGCTAAACTACCTTCAAACGAATCAAATGCGTGTAACAAATTTCATTATGACGTCTTTATCTAACATCCATGACAATTCCATTTTTATGGGGTTTCTATGATACACCAATTACAGTTTATTGAATACTTATTTTGGGGCTTCTTATATCGAAAGATTACATTAGCTGACAAAAGAGCTGGAGACTTCCATTACCACTTCAAGAGAATATTTAGAAAACGAGGGCAACCATGCTATATAGTCAACATGAAAAAGCAAGTCAGCAAGTCTTTTAAGAACAGATTCAAATCTCGAATGGACTGATTGCAACTTTCTAAGTAATAACAATAATAATTAATGTTAGATCTAAGACTTTTGTGATCCATAATGTAGAAATAAGTCTTTCGGATTAATCACATCAGCACGATTAAGAATTAACTTACATGATACAAACCAACTAATCTCAGTTCGAATCCTTAGGACAAGGTGAGAAATCAATCGATTTGAGAGAAAAAATAGCATGGATGTATCATTGTTCAGGGTTAGCCATGTCAAATTAGATACGGGCAAACACTAGAATCAATGATGCATCCCTACATCTTTTAAGAAACGTCAAATCGGATTTCTTCTTAGCAACTTGCAGTCGTGCCCGTTCAAGAAGAGTTAAAGAAGAAGAGTTCTTCACGACACTCACTAGGCTACAAC

Fln Alignment:

Contig11747___QEFSGYPEEHFHGL----LDS-ETFFVDKESLKHQIDELSSFSDSPPPSVTRILYSMNDVLARRYVKSLMEGAGLRVREDAVGNIFGRWEGSNPELSAVATGSHIDAIPYSGKFDGVVGVLGAIEAINVLRRLAFKPKRSLEVIMFTSEEPTRFGIGCLGSRLLAGSVTLAETLKELVDNQNISFEEAAKTAGYTGSLQHLDSVSLPKGAYFGFVELHIEQGPLLEEEGIPIGIVTAIAAPASIKVDFKGNGGHAGAVLMPNRNDXXXXXXXXXXXVERHVLESGSVDSVGTTGIMEIHPGAINSIPSKAHVEIDTRDIDEERRNVIVHKIYQSALEIAERRKVILSEFDIVNQDPPARSYESIIKEMELAAHQLDLKYKLMISRAYHDSLFMARIAPMGMIFIPCYKGYSHRPDEYASIDDISNGVKVLAVTLAKLS
D7T7A4_______________EQFSGYPTQEPDSVSSFSVDAVSSFSVDAQGLQKQIDELSNFSDTPSPSVTRILYSKMDVFARRYIKNLMGLSGLSIREDAVGNIFGRWEGYEPELTAVATGSHIDAIPYSGKYDGVVGVLGAIEAINVLRRSGFKPRRSLEVILFTSEEPTRFGISCLGSRLLAGNEALMKSLETVVDSQNISFFDAARAAGYANDEEDLPSVFLKKGSYSAFVELHIEQGPILEEEGISIGIVTAIAAPASIKVDFEGNGGHAGAVLMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPSKSHLEIDTRDINEMRRNTVIEKTHQSAITIAKNRGVRLSEFKIINQDPPALSDKSITKAMQAASQELNLSHKLMISRAYHDSLFMARISPMGMIFIPCYKGYSHKPEEYASIEDIANGVKVLALTLTKLS

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1833		14	85		0.993533
1835	33			16	1.0
1874	83	16			0.994512
1920	20		80		0.995493
1934		80		20	0.995493
1944	80	20			0.995493
1966	12		87		0.992554
1967	14	14			0.984337
1968		14	14		0.984337
1969			14	85	0.993533
1978	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain