SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11600

Length: 569 nt

UniGene Fasta

>sp_v3.0_unigene11600
GAAGCGACAAGAGTTGGTTGAACTTGTTGACGTGAAACTTGGTCAAGAATACGAGCTTGTCGTCACCACCTACGCAGGTTTGAATCGTTATAGAGTGGGGAATGTGTTGCGTGTGACTGGCTTCCACAACGCTGCTCCTCAATTCCATTTTGTATGCAGACAGAATGTTGTGCTGAGTATCGACTCAGACAAAACGGACGAAGAAGAGCTTCACAGTGCGGTTGAGAATTCTGTTAAGCATCTACAGCCTTTCGACGCCCAATTGATCGAGTATACAAGTTATGCCGACACGTCTACAATACCTGGTCACTACGTGCTGTACTGGGAACTTCGCTTCAACAGCAAAGCAGATGCAGTCGCAGTTCCTTCCTCAGTTTTCGAAAATTGCTGTCTCGCTGTCGAAGAATCCCTGAATGCTGTCTATCGCCAAGGGAGAGCGTCAGATAATTCCATCGGTCCTCTAGAAATTAGGGTAGTTGAAAAGGGAACGTTCGACCAATTGATGGATTATGCTCTCAGCCGAGGGGCATCCATCAATCAATACAAAGCTCCCCGATGCATTAAATTCA

Ace file of the UniGene sp_v3.0_unigene11600

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin-induced GH3 protein n=1 Tax=Pinus pinaster RepID=Q4LAM0_PINPS	-	-	0.0	76%
FL-Next	tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine).	-	-	0.0	76%
Sma3	GH3 family protein	-	-	9.901e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	7.937e-29	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		7.937e-29	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		7.937e-29	%

Source	Gene names
Sma3	AT2G46370; At1g23160; At1g28130; At1g48660; At1g48670; At1g59500; At1g59500 orthologue; At2g14960; At2g23170; At2g46370; At2g47750; At4g27260; At4g37390; At5g13320; At5g13350; At5g13360; At5g13370; At5g13370/T22N19_20; At5g51470; At5g54510; B1070A12.26; C

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	indole-3-acetic acid amido synthetase activity	GO:0010279	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	photomorphogenesis	GO:0009640	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	auxin homeostasis	GO:0010252	Biological Process	-
Sma3	detection of fungus	GO:0016046	Biological Process	-
Sma3	protein adenylylation	GO:0018117	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	GH3 auxin-responsive promoter	IPR004993	-	0.0	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G27260.1	GH3.5, WES1 Auxin-responsive GH3 family protein chr4:13653704-13655892 FORWARD LENGTH=612	75%
RefSeq	Arabidopsis thaliana	NP_194456.1	indole-3-acetic acid-amido synthetase GH3.5 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002319260.1	GH3 family protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4LAM0

Fln msg: Distance to subject end: 35 aas, your sequence is shorter than subject: 189 - 615

Fln protein: KRQELVELVDVKLGQEYELVVTTYAGLNRYRVGNVLRVTGFHNAAPQFHFVCRQNVVLSIDSDKTDEEELHSAVENSVKHLQPFDAQLIEYTSYADTSTIPGHYVLYWELRFNSKADAVAVPSSVFENCCLAVEESLNAVYRQGRASDNSIGPLEIRVVEKGTFDQLMDYALSRGASINQYKAPRCIKF

Protein Length: 190

Fln nts: GAAGCGACAAGAGTTGGTTGAACTTGTTGACGTGAAACTTGGTCAAGAATACGAGCTTGTCGTCACCACCTACGCAGGTTTGAATCGTTATAGAGTGGGGAATGTGTTGCGTGTGACTGGCTTCCACAACGCTGCTCCTCAATTCCATTTTGTATGCAGACAGAATGTTGTGCTGAGTATCGACTCAGACAAAACGGACGAAGAAGAGCTTCACAGTGCGGTTGAGAATTCTGTTAAGCATCTACAGCCTTTCGACGCCCAATTGATCGAGTATACAAGTTATGCCGACACGTCTACAATACCTGGTCACTACGTGCTGTACTGGGAACTTCGCTTCAACAGCAAAGCAGATGCAGTCGCAGTTCCTTCCTCAGTTTTCGAAAATTGCTGTCTCGCTGTCGAAGAATCCCTGAATGCTGTCTATCGCCAAGGGAGAGCGTCAGATAATTCCATCGGTCCTCTAGAAATTAGGGTAGTTGAAAAGGGAACGTTCGACCAATTGATGGATTATGCTCTCAGCCGAGGGGCATCCATCAATCAATACAAAGCTCCCCGATGCATTAAATTCA

Fln Alignment:

Contig11600___ELVELVDVKLGQEYELVVTTYAGLNRYRVGNVLRVTGFHNAAPQFHFVCRQNVVLSIDSDKTDEEELHSAVENSVKHLQPFDAQLIEYTSYADTSTIPGHYVLYWELRFNSKADAVAVPSSVFENCCLAVEESLNAVYRQGRASDNSIGPLEIRVVEKGTFDQLMDYALSRGASINQYKAPRCIKF
Q4LAM0_______________ELVDLVDVKVGQEYELVITTYSGLYRYRVGDVLRVTGFHNAAPQFQFVCRKNVMLSIDADKTDEAELHNAVMNAVKHLEPLEATLVEYTSYTDTSTIPGHYVLYWELR----TSALPVPPSVFEDCCLTVEESLNSVYRQCRVADKSIGPLEIKVVEMGTFDKLMDYAISRGSSINQYKAARCVKF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
523			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain