SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11408

Length: 1564 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11408

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphorylase-like protein protein [Arabidopsis thaliana] gb\|AEE85565.1\| Phosphorylase-like protein protein [Arabidopsis thaliana]	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%

Source	Gene names
Sma3	At4g24340; At4g24340/T22A6_170; GSVIVT00010801001; GSVIVT00016709001; GSVIVT00032448001; OJ1212_C10.15; Os01g0229800; Os05g0228000; OsI_01011; OsI_18961; OsJ_00983; OsJ_17617; P0485D09.15; POPTRDRAFT_745794; RCOM_0802270; RCOM_1051730; VITISV_002973;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	nucleoside metabolic process	GO:0009116	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Nucleoside phosphorylase domain	IPR000845	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Nucleoside phosphorylase	IPR018017	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G28940.1	Phosphorylase superfamily protein chr4:14274414-14276920 FORWARD LENGTH=348	53%
RefSeq	Arabidopsis thaliana	NP_194623.2	Phosphorylase-like protein protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002331152.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL97

Fln msg:

Fln protein: MAPQRNQMLLILLLSLILCFRTKAYYSPDLLGRIHQINQAGPYLGLVIPNKFEMDPLLHSPVFMADEDSPYIDISGRRFRIGTVMNHRVIAVMTGLGMVNAGVTTQVLLGFFSIYGVVHFGTAGNANSGLHVGDVTIPRQWAHTGLWMWQKYGEGENDELPMEDTGDYTRDIGYLNFANYSAPVGNHIDNLLNNLWFQPDEIFPVNGTPEAREHVFWIPVSQSYYELAQKIENVKLDSCVNSTCLSHEPRIVRVERGCSANIYVANAAYRIFLHDKFNVTSFDMESAGVAMICLSEGKPFISMRALVFEPTTGSSQEENKSGIFIEVATKNSVTAISQFINLLPSPRVQTFNLYADHVTDI*

Protein Length: 363

Fln nts: ATGGGGATCCCAGATTACATGCGGAGTGACAGGCAGCAGGTCTATGAATTGCTGCCTATCAATTTTATCTGATTAACAAAAAACCAAGTTTCCTCAGGAATGAAAATGGAGAATTCAATGAGATTTTAATTTACTCTGTTCTTCCGACAATGACATCTCATAAGCAAAGGCACGCGGGTATATGAATTGAAGGCTTGTACTCTTATACGCCCCTACAAACCCTCCACAGAACACCAGAGAAGAGCGCTGACT_-_ATGGCTCCTCAACGAAATCAGATGCTTTTAATTCTGCTTCTGTCGCTGATTCTATGCTTCAGAACGAAGGCATATTATTCACCAGATCTCCTTGGCCGGATCCACCAGATCAATCAGGCTGGCCCGTATCTCGGTCTTGTAATCCCTAACAAATTCGAAATGGACCCGCTACTCCATTCTCCTGTTTTCATGGCCGACGAGGACAGCCCCTATATCGACATCTCTGGTCGGAGGTTTCGCATCGGAACAGTGATGAATCACAGAGTAATTGCGGTGATGACAGGACTGGGTATGGTCAACGCAGGAGTGACTACCCAGGTTTTGCTTGGTTTTTTTTCTATTTATGGGGTTGTACACTTCGGAACAGCGGGTAATGCAAACTCTGGTCTTCATGTTGGAGATGTTACCATCCCTCGTCAGTGGGCTCATACAGGCCTTTGGATGTGGCAGAAATATGGAGAAGGAGAGAATGATGAGCTCCCTATGGAAGACACTGGGGACTACACCCGTGACATTGGGTACCTCAATTTCGCCAATTACAGTGCTCCAGTGGGAAATCATATTGATAATCTGCTGAATAATTTGTGGTTCCAACCAGATGAGATTTTTCCAGTAAATGGAACTCCAGAGGCACGGGAACATGTGTTTTGGATTCCCGTTTCACAGTCCTATTATGAGCTTGCACAGAAGATAGAGAATGTGAAGTTAGATTCGTGTGTGAACTCGACATGTCTGTCCCACGAGCCAAGGATTGTGCGAGTGGAGAGGGGTTGCAGTGCCAACATTTATGTGGCTAATGCTGCTTATAGAATTTTCCTCCATGACAAGTTTAATGTTACTTCGTTCGATATGGAGAGTGCAGGAGTTGCAATGATTTGCCTGAGCGAGGGTAAGCCCTTCATATCTATGAGAGCACTGGTCTTTGAACCCACTACAGGAAGTTCTCAGGAAGAAAACAAATCTGGCATCTTTATAGAAGTTGCAACTAAAAACTCAGTGACAGCAATCAGTCAATTCATAAATTTACTGCCATCCCCTCGGGTACAGACCTTTAATCTGTATGCAGATCATGTTACTGATATTTGA___CATTTATTTTATAACAGTTTGCGTTTCTATCAAGTTCTCTTGAAAGTTTTTTGATGTCTGGACGGCAGAATCCTTAATGAAGCGTTTAAGGAATAGACCCATATAGTGGGACTTCCAGAATACACAACCCAAAATGCGTGAACAAGAAGATTTTTCCAAAGTATTTGATTTTCATAATATAGACAGTAATTAGACTTCCATGAAGCACAAATTCATAACCTACATG

Fln Alignment:

Contig11408___IHQINQAGPYLGLVIPNKFEMDPLLHSPVFMADEDSPYIDISGRRFRIGTVMNHRVIAVMTGLGMVNAGVTTQVLLGFFSIYGVVHFGTAGNANSGLHVGDVTIPRQWAHTGLWMWQKYGEGENDELPMEDTGDYTRDIGYLNFANYSAPVGNHIDNLLNNLWFQPDEIFPVNGTPEAREHVFWIPVSQSYYELAQKIENVKLDSCVNS-TCLSHEPRIVRVERGCSANIYVANAAYRIFLHDKFNVTSFDMESAGVAMICLSEGKPFISMRALVFEPTTGSSQEENKSGIFIEVATKNSVTAISQFI
B8LL97_______________IRKINRHGPYLGIVVPNAFEMDPLLQSSSFNV---SKTLDVAGRRFHIGSIHKHRVIIVMSGLGMLNSGITTQLLLSFFEVKGVVHYGIAGNANSSLHIGDVTIPRYWAHTGLWNWQRYGDGPSDELSLESNGDYTRQIGYLDFANFTTPSNQSSGNLLNNVWYQPEEVFPVNGTPEVRQHAFWVPVDEHYYQIAKSLETLKLEGCLNSTTCLSNTPKAVLVERGSSANVFVDNAAYRNFLYTKFNISPIDMESAAVALVCLEQGLPFIAIRSL-SDLAGGGTSESNQAAVFAGLASQNAVTAVIQFI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1474	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain