SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11379

Length: 1820 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene11379 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-soluble NSF attachment protein n=2 Tax=Elaeis guineensis RepID=B3TM19_ELAGV	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NSF attachment protein	IPR000744	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G56190.1	ALPHA-SNAP2, ASNAP alpha-soluble NSF attachment protein 2 chr3:20846119-20848356 REVERSE LENGTH=289	67%
RefSeq	Arabidopsis thaliana	NP_191178.1	alpha-soluble NSF attachment protein 2 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002312193.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0M8

Fln msg:

Fln protein: MAEQEAKGSEFEKKADKKIQGWSIFGSKYDDAAELYEKAGNSYKLAKSWDKAGSTYIKLANCHLKLESKHEGASAYVDAANCYKKTNIQESVRCLNLAVNLFLEIGRLSMAAKHCKEIGDLYESEENFELAMQYFERAADLFRGEEVTSTANQCQLKVAQFAAQLEQYPKAIQIFEEVAQQSINNNLLKYSVKGYLLNAGLCHICKGDVVAINNALDKYQELDPTFSGTRECKFLADLANAIDEEDVVNFTDVVKEFDSMTRLDQWKTSLLLRAKNTLKAKEVEEDDLT*

Protein Length: 291

Fln nts: TTGATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGATTATGATTGCGGTTATTTCATGATAATCTGACTCTGTGTGCTTATCAAATTGACGTCTTTCTGTTCTTCCGCGTCCTTAGTGTGAAGGTTTTCTAAAAGTCTGTGACCTTGATTCGGATCTTCGCAGCAGTGCATTGCCTTTTGAGGACTAAGGTGGTCAACCAGAGCTTACTGAGCTTATTGAAGACAAAATAAGTAAT_-_ATGGCAGAACAAGAAGCCAAGGGATCTGAGTTTGAGAAGAAAGCAGACAAGAAGATACAAGGATGGTCGATTTTTGGTTCTAAATATGATGATGCTGCAGAGTTATATGAGAAGGCTGGCAATTCCTACAAGCTTGCAAAATCTTGGGACAAAGCTGGATCAACATATATCAAGCTAGCAAATTGTCATTTAAAGCTGGAAAGTAAGCACGAGGGAGCATCAGCATATGTGGATGCAGCTAACTGCTACAAAAAGACTAACATTCAAGAGTCCGTTCGATGCTTAAATTTGGCTGTTAATCTCTTTCTGGAGATAGGAAGATTGTCAATGGCTGCAAAGCATTGCAAGGAGATTGGTGACCTATATGAGTCGGAAGAAAATTTCGAATTGGCTATGCAATATTTTGAGCGTGCTGCAGACCTCTTTCGAGGTGAAGAAGTTACTAGTACAGCTAACCAATGCCAACTTAAAGTTGCACAGTTTGCGGCCCAGCTTGAACAATACCCAAAGGCCATCCAAATTTTTGAAGAAGTAGCACAGCAGTCAATCAATAATAATCTTCTCAAGTACAGCGTTAAGGGTTATCTTCTAAATGCTGGTCTTTGCCATATTTGCAAGGGTGATGTTGTGGCAATAAACAATGCACTTGATAAATATCAGGAACTTGATCCAACATTTTCGGGTACCAGAGAGTGCAAATTCCTAGCAGATTTGGCTAATGCAATTGACGAGGAGGATGTGGTGAACTTTACTGATGTTGTCAAGGAGTTTGATAGTATGACTAGACTGGATCAATGGAAAACATCCCTCTTGCTTCGTGCAAAGAACACTTTGAAAGCTAAGGAGGTTGAGGAGGATGATCTTACATAG___GTTACTCTAGTAACCTGGGTGTATTATTACTGGCTGCGTATATTTTCTTTTGCAGGAAGGATGGTTGTCATCAGGATAGACTGATGTTTGATTCACCTGAAAGTTTGAGACCGCCCATCTTTGATTTATGGATAGAGGTTGCTTCCTTGCCATTTACATAAAATTGGGACTAAAGGTGTTGCTTCCTTACCATTTACATAAAATTGGGACTAAAGGTGTTGCTTCCTTACCATTTACATAAAATCGGGACTAAAGGACTTTGTATCCGGGTAGCTTTAAACAGGAGGTTTGCTGACATGTTGGTGTTCTATATTTGAATATTCATTCTCAAAACTTATTACTACCGAGTCTGTGTGAATATCGTTTTATTTTCATTTGTAAACCAGCTGTCCACATGGATTTATTACATGTGTGACCAGGGCTTTTGGTGGTGGAAGATCTATATTTATGAAGCTATTTGCATTATTTCCTTTATAGGCCTATGCTGGCCAGAATGCATTATGAAGATCTTTATTTGTAACTGGGTTAAGTTCCTAAGTTGACTTCAGAATATAATTTTTTTAGTTTTGTGCTTCTTGTACTGGGATTTATAATGTGGGACAGCCATGCAAATTCATGTGCTATGGACATGATTCTGCAAATAGTAGTACATTTTAATTGTAAAATTTCCAAACCCTAGGCAACTGTTGTCTTATGCTTCTT

Fln Alignment:

Contig11379___MAEQEAKGSEFEKKADKKIQGWSIFGSKYDDAAELYEKAGNSYKLAKSWDKAGSTYIKLANCHLKLESKHEGASAYVDAANCYKKTNIQESVRCLNLAVNLFLEIGRLSMAAKHCKEIGDLYESEENFELAMQYFERAADLFRGEEVTSTANQCQLKVAQFAAQLEQYPKAIQIFEEVAQQSINNNLLKYSVKGYLLNAGLCHICKGDVVAINNALDKYQELDPTFSGTRECKFLADLANAIDEEDVVNFTDVVKEFDSMTRLDQWKTSLLLRAKNTLKAKEVEEDD
A9P0M8_______________MAEQEAKGSEFERKADKKIQGWSIFGSKYDDAAELYEKAGNSYKLAKSWDKAGSTYIKLANCHLKLESKHEGASAYVDAANCYKKTNNQEAVRCLNLAVNLFLEIGRLSMAAKHCKEIGDLYEAEENLELAMQYFERAADLFRGEEVTSTANQCQLKVAQFAAQLEQYPKAIQIFEEVAQQSINNNLLKYSVKGYLLNAGLCHICKGDVVAINNAIEKYQELDPTFSGTRECKFLADLANAIDEEDVVNFTDVVKEFDSMTRLDQWKTSLLLRAKNTLKAKEVEEDD

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
800		11		88	0.923564
833	90		10		0.90298
1073		10		90	0.90298
1643		7	90	2	0.999998
1681	84		3		1.0
1722	88	12			1.0
1723	92	8			0.999718
1724		8		92	0.999718
1725	8			91	0.999766
1727	4	9	81		0.999363
1728	86	13			1.0
1729		18		81	1.0
1730	80	19			1.0
1731	85	9		4	0.999726
1732		10	80	10	0.99967
1735		88		11	0.999937
1736	88		11		0.999952
1759	70	30			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain