SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11253

Length: 1315 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11253

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0724 RNA-binding proteins (RRM domain)	-	-	5.0e-18	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G52150.1	RNA-binding (RRM/RBD/RNP motifs) family protein chr3:19342074-19343090 FORWARD LENGTH=253	61%
RefSeq	Arabidopsis thaliana	NP_001030841.1	RNA recognition motif-containing protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002314019.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYV5

Fln msg:

Fln protein: MATASWLSIASATPMYKPTSSPKLPPSRLSSISMSLSYLRPVSALRQKRRVFSTKAQVQVQEAVQGGMQKEIERRLYVGNIPRTCNNEELAKIFGECGTVEKAEVMYDKYTKRSRRFAFVTMSTVEDAQTAIEKMNGTEIGGRVIKVNITEKPLDVSGLNRLTEEAEFIDSPYKVYVGNLAKTVTTETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSEADVEAAISAFNNVVLEGKPMRVNVV*

Protein Length: 251

Fln nts: ATTGGGTAGTCTTACTAATTCTTATATGCGTCATCTCGAAGTGTTCATCGCGAAGTGTTGAAAAACGGCAATAAACCCAAATCACCCACTGCCAATCGTAAAGCATTTACTCTTCGGAATTATTGATAATATATAGACTGTTGGAACTAGTGTTTCCCATTCATTGATAAAC_-_ATGGCAACTGCATCTTGGTTATCCATAGCCAGTGCCACTCCTATGTATAAGCCAACCTCTTCACCAAAGCTTCCTCCATCTCGTCTGTCAAGTATCTCAATGTCCTTGTCATACCTGCGTCCTGTTTCTGCATTAAGACAGAAGAGGAGGGTCTTCAGCACCAAAGCACAAGTCCAAGTCCAAGAGGCAGTGCAAGGTGGCATGCAGAAAGAGATTGAAAGGAGACTGTATGTGGGCAATATCCCCAGGACATGTAACAATGAAGAGCTTGCTAAGATCTTTGGTGAATGTGGAACTGTGGAGAAAGCAGAGGTTATGTATGACAAGTATACTAAGAGAAGTCGACGTTTTGCTTTTGTTACAATGAGCACTGTTGAGGATGCTCAAACGGCCATTGAAAAGATGAATGGCACTGAAATAGGTGGTCGTGTGATTAAGGTTAACATTACAGAAAAACCTTTGGATGTATCTGGTTTAAATCGTCTGACAGAAGAAGCCGAATTTATTGACAGCCCATATAAAGTATATGTGGGTAATCTTGCAAAGACAGTAACCACTGAGACACTGAAAAAGAAATTTGCTGAGAAGGGAAACGTTTTGGATGCTAAAGTCACACGGATACCTGAAACAGGAAAGTCTGGTGGCTATGGATTTGTTTCTTTCTCGTCAGAGGCAGATGTCGAGGCAGCTATTTCTGCATTCAATAATGTGGTGCTGGAAGGAAAGCCCATGAGAGTGAATGTGGTATGA___AGAATCAATGACATATGCTGACTTCTGGCAAGCAGAGCTAGTACACCTGACTATGTCAGTTTATTGTCTGGATGATGAAATATGCTCTTGACAGTATATATCCAACTTACCTGTTTATTGTCTGGATGATGAAATATGCTCTAGGAAGTTTGGATTCTGGAACATGCTCACATGAACTTGAACTACGAGTTTTAAGGTAATCCTGCTTTAGTACTTTCCCTTGCATGCATGCAGGTTGATTGCTGTATGAAGATTGCCTAAAGCAGAGATTTGATGTACAGCCTGCTTGTCTCAGATAATTTTTTGTCATGATATTCAATTCAAGATCATTTAATTGGAATCTAGACAAAGCATGTTTATGTTGAATTTATTGATGTCAACTGAAATAGCTGC

Fln Alignment:

Contig11253___MATASWLSIASATPMYXXXXXXXXXXXXXXXXXXXXXXXXXVSALRQKRRVFSTKXXXXXXXXXXXXXXKEIERRLYVGNIPRTCNNEELAKIFGECGTVEKAEVMYDKYTKRSRRFAFVTMSTVEDAQTAIEKMNGTEIGGRVIKVNITEKPLDVSGLNRLTEEAEFIDSPYKVYVGNLAKTVTTETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSEADVEAAISAFNNVVLEGKPMRVNV
A9NYV5_______________MAAASWLSIASATRIYKPTSPPKLPPSRLSNISMPLSHPCPVSALRRKR-VFSTKAQVQVQEAVQGGKQKEIERRLYVGNIPRTSTNEELAKIFGECGNVEKAEVMYDKYTKRSRRFAFVTMSTVEDAQAAIEKMNGTEIGGRVIKVNITEKPLDVSGLNRLTEEAEFIDSPYKVYVGNLAKAVTTETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSEADVEAAISAFNNVVLEGKPMRVNV

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
162			33	66	1.0
163		33	66		1.0
183		14	85		0.993533
184		85		14	0.993533
185	85	14			0.993533
376	25			75	1.0
527		11		88	0.923564
713		33		66	1.0
931	45		54		1.0
1008		87		12	0.992554
1021	73		26		1.0
1046		23		76	1.0
1047			76	23	1.0
1099	21	78			1.0
1127		11		88	0.923564
1269	25		75		0.996473
1273	50	50			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain