SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11235

Length: 1213 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11235

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L7Ae-like [Arabidopsis thaliana]	-	-	1.0e-31	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	0.0	-
Sma3	ribosome biogenesis	GO:0042254	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	IPR002415	-	-
Sma3	Ribosomal protein L7Ae/L8/Nhp2 family	IPR018492	-	-
Sma3	Ribosomal protein L7Ae/L30e/S12e/Gadd45	IPR004038	-	-
Sma3	Ribosomal protein L7Ae conserved site	IPR004037	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G22380.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein chr4:11812041-11812922 REVERSE LENGTH=128	7.0e-39	58%
RefSeq	Arabidopsis thaliana	NP_197516.1	U4/U6 small nuclear ribonucleoprotein SNU13 [Arabidopsis thaliana]	7.0e-39	58%
RefSeq	Populus trichocarpa	XP_002327218.1	predicted protein [Populus trichocarpa]	3.00004e-41	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P000

Fln msg:

Fln protein: MGTQIAKSSLLHHLLRQPARSSFLRHICAASNASDKATDAVVNVNPKTRPLADAELYTAIIDVVRDASEVRQVKKGAHEVFKALHKGLADFVLIAADTQPLDIVLHLPTLAKTKKVPYVFVPSKQELGRACGVVISPVVACAVISTNIGSGLDSRISKLKVAIEKLHIKG*

Protein Length: 172

Fln nts: ATGGGGAAATAAAATTCTGCTGTAGTTATTGCTGGCGATTCCCCTAATCCAAATTTTTGGCATTGGTGTAAACGAATGTCTTCCAGGTGAAACAGGTCTGATCGAGCGAGAGCGCTTCAGATTCGAGGATATGAATCTTAGCGTGATTAGGGTTTAAGAGATGAATGTTGAAGTTATATCAGTAAGAGTAAGCGTTGGTATTGACTTGTGAAGGGTTTCA_-_ATGGGAACACAAATTGCCAAATCATCGCTTCTGCATCATTTGTTAAGACAACCAGCAAGAAGTAGCTTTCTTCGCCACATATGCGCAGCAAGTAATGCCTCGGACAAGGCAACAGACGCTGTAGTAAATGTAAATCCCAAAACCCGGCCACTGGCGGATGCCGAGCTCTACACAGCAATAATAGATGTTGTTCGGGATGCTTCTGAGGTCAGACAGGTGAAGAAAGGTGCACATGAAGTTTTCAAGGCATTGCACAAGGGGTTAGCAGACTTTGTTCTAATCGCAGCGGACACGCAGCCTCTGGACATTGTTCTCCATCTGCCAACCTTGGCTAAAACTAAGAAAGTACCGTATGTATTTGTGCCATCAAAACAAGAACTGGGCCGTGCGTGTGGAGTGGTGATTAGTCCTGTGGTTGCCTGCGCTGTGATCTCGACAAATATAGGGAGCGGGCTTGACTCCCGGATAAGCAAGCTCAAGGTTGCCATTGAAAAGCTGCACATAAAAGGATGA___GGGTGCTAACATAAGAGGATGGAATGTGCCCTACATTGGGTTTAGGGTTGATGGTTTTAAGACAATGACCTGGAATTTTAGCTTGGCCTCCAAGTCTCAGATTGTTGGCTGTCCATCGAGGTGTTGTTATTGAGCTCCTATATTTATCGAAACCAGTTTTGTAGATTTTTTTTATGTTCCAGCGTAATCTGTGTTTGTTCACTATTTCCAGCTGTGTTTTCTTAACGAATTTTGAAACAAGGCAATTCTGAATAGCTGAGTGATTTTTCAATTCAGAGCGAAATAATTGGAAACCTCTATTCATCATGGGGTAAAATGCCATTTGTAGGATAATCGATGATTATTGGAAATTAGGGGTTTTCCGTGCTTATCATTGGAGATACTTAATCTCTTGCCTGCAGTGCCTATTTTTGGTTATCAGGCCATTATTATAAAGAATTCAAAATTGTGGCATCACAATGCTTTTGGAACAATGTCCTC

Fln Alignment:

Contig11235___MGTQIAKSSLLHHLLRQPARSSFLRHICAASNASDKATDAVVNVNPKTRPLADAELYTAIIDVVRDASEVRQVKKGAHEVFKALHKGLADFVLIAADTQPLDIVLHLPTLAKTKKVPYVFVPSKQELGRACGVVISPVVACAVISTNIGSGLDSRISKLKVAIEKLHI
A9P000_______________MGTQIAKLSLLHHLLMQPARSSFLRHICAATNASDKTTEAVVNVNPKAQPLADTELYTSIIEVVRDASEVRQLKKGAHEVFKTLHRGLADFVIIAADTQPLDIVLHLPTLAKTKKIPYVFVPSKQELGRACGVVISPVVACAVMSTHIGSGLDARISKLKVAIQNLHM

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
260		19		80	1.0
290		73		26	1.0
735		10	90		0.90298
736	10		90		0.90298
738			90	10	0.90298
761	12		87		0.992554
763	12	87			0.992554
764		87		12	0.992554
775	14			85	0.993533
776		14		85	0.993533
778			85	14	0.993533
779			85	14	0.993533
807	85	14			0.993533
808	85		14		0.993533
810			14	85	0.993533
812			14	85	0.993533
814		14	85		0.993533
821		85	14		0.993533
825	85	14			0.993533
846	14	85			0.993533
871		87	12		0.992554
874		12		87	0.992554
875	87	12			0.992554
878			12	87	0.992554
879	87		12		0.992554
880		12		87	0.992554
881		87		12	0.992554
883	87			12	0.992554
884	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain